package eu.dnetlib.dhp.sx.ebi.model import scala.xml.pull.{EvElemEnd, EvElemStart, EvText, XMLEventReader} class PMParser(xml:XMLEventReader) extends Iterator[PMArticle] { var currentArticle:PMArticle = generateNextArticle() override def hasNext: Boolean = currentArticle!= null override def next(): PMArticle = { val tmp = currentArticle currentArticle = generateNextArticle() tmp } def generateNextArticle():PMArticle = { var currentAuthor: PMAuthor = null var currentJournal: PMJournal = null var currNode: String = null var currentYear = "0" var currentMonth = "01" var currentDay = "01" while (xml.hasNext) { xml.next match { case EvElemStart(_, label, _, _) => currNode = label label match { case "PubmedArticle" => currentArticle = new PMArticle case "Author" => currentAuthor = new PMAuthor case "Journal" => currentJournal = new PMJournal case _ => } case EvElemEnd(_, label) => label match { case "PubmedArticle" => return currentArticle case "Author" => currentArticle.getAuthors.add(currentAuthor) case "Journal" => currentArticle.setJournal(currentJournal) case "DateCompleted" => currentArticle.setDate(s"$currentYear-$currentMonth-$currentDay") case "PubDate" => currentJournal.setDate(s"$currentYear-$currentMonth-$currentDay") case _ => } case EvText(text) => if (currNode!= null && text.trim.nonEmpty) currNode match { case "ArticleTitle" => { if (currentArticle.getTitle==null) currentArticle.setTitle(text.trim) else currentArticle.setTitle(currentArticle.getTitle + text.trim) } case "AbstractText" => { if (currentArticle.getDescription==null) currentArticle.setDescription(text.trim) else currentArticle.setDescription(currentArticle.getDescription + text.trim) } case "PMID" => currentArticle.setPmid(text.trim) case "ISSN" => currentJournal.setIssn(text.trim) case "Year" => currentYear = text.trim case "Month" => currentMonth = text.trim case "Day" => currentDay = text.trim case "Volume" => currentJournal.setVolume( text.trim) case "Issue" => currentJournal.setIssue (text.trim) case "LastName" => { if (currentAuthor != null) currentAuthor.setLastName(text.trim) } case "ForeName" => if (currentAuthor != null) currentAuthor.setForeName(text.trim) case "Title" => if (currentJournal.getTitle==null) currentJournal.setTitle(text.trim) else currentJournal.setTitle(currentJournal.getTitle + text.trim) case _ => } case _ => } } null } }