COVID-19 Knowledge Graph: A semantic resource embedding biological and chemical entities

doi_________::9cb0664d4c891c4baaf73f007c0c9de0 2022-11-25T12:55:13Z under curation

COVID-19 Knowledge Graph: A semantic resource embedding biological and chemical entities Karki, Reagon

A Knowledge graph representation of compounds and associated biological entities in the BY-COVID and EOSC Future project.

Current status

Number of Nodes: 35952
Number of Edges: 279462
Human Proteins: 1347
Assay: 15835
Chemical/Compound: 4096
Mechanism of Action: 739
Pathway: 1513
Disease: 1585
SideEffect: 7420
Biological Process: 2085
Molecular Function: 1332

Please check the BY_COVID_update_August.ipynb for understanding step wise process of KG generation and KG statistics. The KG has been exported to formats such as graphml, sif and so on for visualizations in other platforms. For example, the graphml file can be imported to Cytoscape directly. These files are located in 'data\export' folder.

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