package eu.dnetlib.dhp.bulktag; import static eu.dnetlib.dhp.PropagationConstant.readPath; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.util.*; import java.util.function.Function; import java.util.stream.Collectors; import java.util.stream.Stream; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.schema.common.ModelConstants; import eu.dnetlib.dhp.schema.oaf.*; import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils; public class SparkEoscTag { private static final Logger log = LoggerFactory.getLogger(SparkEoscTag.class); public static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); public static final Qualifier EOSC_QUALIFIER = OafMapperUtils .qualifier( "eosc", "European Open Science Cloud", ModelConstants.DNET_SUBJECT_TYPOLOGIES, ModelConstants.DNET_SUBJECT_TYPOLOGIES); public static final DataInfo EOSC_DATAINFO = OafMapperUtils .dataInfo( false, "propagation", true, false, OafMapperUtils .qualifier( "propagation:subject", "Inferred by OpenAIRE", ModelConstants.DNET_PROVENANCE_ACTIONS, ModelConstants.DNET_PROVENANCE_ACTIONS), "0.9"); public final static StructuredProperty EOSC_NOTEBOOK = OafMapperUtils .structuredProperty( "EOSC::Jupyter Notebook", EOSC_QUALIFIER, EOSC_DATAINFO); public final static StructuredProperty EOSC_GALAXY = OafMapperUtils .structuredProperty( "EOSC::Galaxy Workflow", EOSC_QUALIFIER, EOSC_DATAINFO); public final static StructuredProperty EOSC_TWITTER = OafMapperUtils .structuredProperty( "EOSC::Twitter Data", EOSC_QUALIFIER, EOSC_DATAINFO); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( SparkEoscTag.class .getResourceAsStream( "/eu/dnetlib/dhp/bulktag/input_eoscTag_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String workingPath = parser.get("workingPath"); log.info("workingPath: {}", workingPath); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { execEoscTag(spark, inputPath, workingPath); }); } private static void execEoscTag(SparkSession spark, String inputPath, String workingPath) { readPath(spark, inputPath + "/software", Software.class) .map((MapFunction) s -> { List sbject; if (!Optional.ofNullable(s.getSubject()).isPresent()) s.setSubject(new ArrayList<>()); sbject = s.getSubject(); if (containsCriteriaNotebook(s)) { sbject.add(EOSC_NOTEBOOK); } if (containsCriteriaGalaxy(s)) { sbject.add(EOSC_GALAXY); } return s; }, Encoders.bean(Software.class)) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(workingPath + "/software"); readPath(spark, workingPath + "/software", Software.class) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(inputPath + "/software"); readPath(spark, inputPath + "/otherresearchproduct", OtherResearchProduct.class) .map((MapFunction) orp -> { List sbject; if (!Optional.ofNullable(orp.getSubject()).isPresent()) orp.setSubject(new ArrayList<>()); sbject = orp.getSubject(); if (containsCriteriaGalaxy(orp)) { sbject.add(EOSC_GALAXY); } if (containscriteriaTwitter(orp)) { sbject.add(EOSC_TWITTER); } return orp; }, Encoders.bean(OtherResearchProduct.class)) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(workingPath + "/otherresearchproduct"); readPath(spark, workingPath + "/otherresearchproduct", OtherResearchProduct.class) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(inputPath + "/otherresearchproduct"); readPath(spark, inputPath + "/dataset", Dataset.class) .map((MapFunction) d -> { List sbject; if (!Optional.ofNullable(d.getSubject()).isPresent()) d.setSubject(new ArrayList<>()); sbject = d.getSubject(); if (containscriteriaTwitter(d)) { sbject.add(EOSC_TWITTER); } return d; }, Encoders.bean(Dataset.class)) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(workingPath + "/dataset"); readPath(spark, workingPath + "/dataset", Dataset.class) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(inputPath + "/dataset"); } private static boolean containscriteriaTwitter(Result r) { Set words = getWordsSP(r.getTitle()); words.addAll(getWordsF(r.getDescription())); if (words.contains("twitter") && (words.contains("data") || words.contains("dataset"))) return true; if (r.getSubject().stream().anyMatch(sbj -> sbj.getValue().toLowerCase().contains("twitter")) && r.getSubject().stream().anyMatch(sbj -> sbj.getValue().toLowerCase().contains("data"))) return true; return false; } private static boolean containsCriteriaGalaxy(Result r) { Set words = getWordsSP(r.getTitle()); words.addAll(getWordsF(r.getDescription())); if (words.contains("galaxy") && (words.contains("workflow") || words.contains("software"))) return true; if (r.getSubject().stream().anyMatch(sbj -> sbj.getValue().toLowerCase().contains("galaxy")) && (r.getSubject().stream().anyMatch(sbj -> sbj.getValue().toLowerCase().contains("workflow"))) || r.getSubject().stream().anyMatch(sbj -> sbj.getValue().toLowerCase().contains("software"))) return true; return false; } private static boolean containsCriteriaNotebook(Software s) { if (s.getSubject().stream().anyMatch(sbj -> sbj.getValue().toLowerCase().contains("jupyter"))) return true; if (s .getSubject() .stream() .anyMatch( sbj -> sbj.getValue().toLowerCase().contains("python") && sbj.getValue().toLowerCase().contains("notebook"))) return true; if (s.getSubject().stream().anyMatch(sbj -> sbj.getValue().toLowerCase().contains("python")) && s.getSubject().stream().anyMatch(sbj -> sbj.getValue().toLowerCase().contains("notebook"))) return true; return false; } private static Set getSubjects(List s) { Set subjects = new HashSet<>(); s.stream().forEach(sbj -> subjects.addAll(Arrays.asList(sbj.getValue().toLowerCase().split(" ")))); s.stream().forEach(sbj -> subjects.add(sbj.getValue().toLowerCase())); return subjects; } private static Set getWordsSP(List elem) { Set words = new HashSet<>(); elem .forEach( t -> words.addAll(Arrays.asList(t.getValue().toLowerCase().replaceAll("[^a-zA-Z ]", "").split(" ")))); return words; } private static Set getWordsF(List> elem) { Set words = new HashSet<>(); elem .forEach( t -> words.addAll(Arrays.asList(t.getValue().toLowerCase().replaceAll("[^a-zA-Z ]", "").split(" ")))); return words; } }