package eu.dnetlib.dhp.schema.oaf.utils; import java.io.IOException; import java.io.Serializable; import java.util.*; import java.util.stream.Collectors; import org.apache.commons.io.IOUtils; import org.apache.commons.lang3.StringUtils; import eu.dnetlib.dhp.schema.oaf.CleaningFunctions; import eu.dnetlib.dhp.schema.oaf.OafEntity; import eu.dnetlib.dhp.schema.oaf.StructuredProperty; import eu.dnetlib.dhp.utils.DHPUtils; /** * Factory class for OpenAIRE identifiers in the Graph */ public class IdentifierFactory implements Serializable { public static final String ID_SEPARATOR = "::"; public static final String ID_PREFIX_SEPARATOR = "|"; public final static String ID_REGEX = "^[0-9][0-9]\\" + ID_PREFIX_SEPARATOR + ".{12}" + ID_SEPARATOR + "[a-zA-Z0-9]{32}$"; public final static String DOI_REGEX = "(^10\\.[0-9]{4,9}\\/[-._;()\\/:a-zA-Z0-9]+$)|" + "(^10\\.1002\\/[^\\s]+$)|" + "(^10\\.1021\\/[a-zA-Z0-9_][a-zA-Z0-9_][0-9]++$)|" + "(^10\\.1207\\/[a-zA-Z0-9_]+\\&[0-9]+_[0-9]+$)"; public static final int ID_PREFIX_LEN = 12; /** * Creates an identifier from the most relevant PID (if available) in the given entity T. Returns entity.id * when no PID is available * @param entity the entity providing PIDs and a default ID. * @param the specific entity type. Currently Organization and Result subclasses are supported. * @param md5 indicates whether should hash the PID value or not. * @return an identifier from the most relevant PID, entity.id otherwise */ public static String createIdentifier(T entity, boolean md5) { if (Objects.isNull(entity.getPid()) || entity.getPid().isEmpty()) { return entity.getId(); } Map> pids = entity .getPid() .stream() .map(CleaningFunctions::normalizePidValue) .filter(IdentifierFactory::pidFilter) .collect( Collectors .groupingBy( p -> p.getQualifier().getClassid(), Collectors.mapping(p -> p, Collectors.toList()))); return pids .values() .stream() .flatMap(s -> s.stream()) .min(new PidComparator<>(entity)) .map( min -> Optional .ofNullable(pids.get(min.getQualifier().getClassid())) .map( p -> p .stream() .sorted(new PidValueComparator()) .findFirst() .map(s -> idFromPid(entity, s, md5)) .orElseGet(entity::getId)) .orElseGet(entity::getId)) .orElseGet(entity::getId); } /** * @see {@link IdentifierFactory#createIdentifier(OafEntity, boolean)} */ public static String createIdentifier(T entity) { return createIdentifier(entity, true); } protected static boolean pidFilter(StructuredProperty s) { final String pidValue = s.getValue(); if (Objects.isNull(s.getQualifier()) || StringUtils.isBlank(pidValue) || StringUtils.isBlank(pidValue.replaceAll("(?:\\n|\\r|\\t|\\s)", ""))) { return false; } if (CleaningFunctions.PID_BLACKLIST.contains(pidValue)) { return false; } if (PidBlacklistProvider.getBlacklist(s.getQualifier().getClassid()).contains(pidValue)) { return false; } switch (PidType.tryValueOf(s.getQualifier().getClassid())) { case doi: final String doi = StringUtils.trim(StringUtils.lowerCase(pidValue)); return doi.matches(DOI_REGEX); case original: return false; default: return true; } } private static String idFromPid(T entity, StructuredProperty s, boolean md5) { return new StringBuilder() .append(StringUtils.substringBefore(entity.getId(), ID_PREFIX_SEPARATOR)) .append(ID_PREFIX_SEPARATOR) .append(createPrefix(s.getQualifier().getClassid())) .append(ID_SEPARATOR) .append(md5 ? DHPUtils.md5(s.getValue()) : s.getValue()) .toString(); } // create the prefix (length = 12) private static String createPrefix(String pidType) { StringBuilder prefix = new StringBuilder(StringUtils.left(pidType, ID_PREFIX_LEN)); while (prefix.length() < ID_PREFIX_LEN) { prefix.append("_"); } return prefix.substring(0, ID_PREFIX_LEN); } }