package eu.dnetlib.dhp.oa.graph.dump.complete; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import java.util.HashMap; import org.apache.commons.io.FileUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.api.java.function.ForeachFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.Row; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.AfterAll; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.schema.dump.oaf.graph.Relation; public class DumpRelationTest { private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static SparkSession spark; private static Path workingDir; private static final Logger log = LoggerFactory .getLogger(DumpRelationTest.class); private static final HashMap map = new HashMap<>(); @BeforeAll public static void beforeAll() throws IOException { workingDir = Files .createTempDirectory(DumpRelationTest.class.getSimpleName()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(DumpRelationTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); spark = SparkSession .builder() .appName(DumpRelationTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } @Test public void test1() throws Exception { final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/relation/relation") .getPath(); SparkDumpRelationJob.main(new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-outputPath", workingDir.toString() + "/relation", "-sourcePath", sourcePath }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/relation") .map(item -> OBJECT_MAPPER.readValue(item, Relation.class)); org.apache.spark.sql.Dataset verificationDataset = spark .createDataset(tmp.rdd(), Encoders.bean(Relation.class)); verificationDataset.createOrReplaceTempView("table"); verificationDataset .foreach((ForeachFunction) r -> System.out.println(new ObjectMapper().writeValueAsString(r))); Dataset check = spark .sql( "SELECT reltype.name, source.id source, source.type stype, target.id target,target.type ttype, provenance.provenance " + "from table "); Assertions.assertEquals(22, check.filter("name = 'isProvidedBy'").count()); Assertions .assertEquals( 22, check .filter( "name = 'isProvidedBy' and stype = 'datasource' and ttype = 'organization' and " + "provenance = 'Harvested'") .count()); Assertions.assertEquals(7, check.filter("name = 'isParticipant'").count()); Assertions .assertEquals( 7, check .filter( "name = 'isParticipant' and stype = 'organization' and ttype = 'project' " + "and provenance = 'Harvested'") .count()); Assertions.assertEquals(1, check.filter("name = 'isAuthorInstitutionOf'").count()); Assertions .assertEquals( 1, check .filter( "name = 'isAuthorInstitutionOf' and stype = 'organization' and ttype = 'result' " + "and provenance = 'Inferred by OpenAIRE'") .count()); } @Test public void test2() throws Exception { final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/relation/relation_validated") .getPath(); SparkDumpRelationJob.main(new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-outputPath", workingDir.toString() + "/relation", "-sourcePath", sourcePath }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/relation") .map(item -> OBJECT_MAPPER.readValue(item, Relation.class)); org.apache.spark.sql.Dataset verificationDataset = spark .createDataset(tmp.rdd(), Encoders.bean(Relation.class)); verificationDataset.createOrReplaceTempView("table"); verificationDataset .foreach((ForeachFunction) r -> System.out.println(new ObjectMapper().writeValueAsString(r))); Dataset check = spark .sql( "SELECT reltype.name, source.id source, source.type stype, target.id target,target.type ttype, provenance.provenance " + "from table "); Assertions.assertEquals(20, check.filter("name = 'isProvidedBy'").count()); Assertions .assertEquals( 20, check .filter( "name = 'isProvidedBy' and stype = 'datasource' and ttype = 'organization' and " + "provenance = 'Harvested'") .count()); Assertions.assertEquals(7, check.filter("name = 'isParticipant'").count()); Assertions .assertEquals( 7, check .filter( "name = 'isParticipant' and stype = 'organization' and ttype = 'project' " + "and provenance = 'Harvested'") .count()); Assertions.assertEquals(1, check.filter("name = 'isAuthorInstitutionOf'").count()); Assertions .assertEquals( 1, check .filter( "name = 'isAuthorInstitutionOf' and stype = 'organization' and ttype = 'result' " + "and provenance = 'Inferred by OpenAIRE'") .count()); Assertions.assertEquals(2, check.filter("name = 'isProducedBy'").count()); Assertions .assertEquals( 2, check .filter( "name = 'isProducedBy' and stype = 'project' and ttype = 'result' " + "and provenance = 'Harvested' and validated = true " + "and validationDate = '2021-08-06'") .count()); } @Test public void test3() throws Exception {// final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/relation/relation") .getPath(); SparkDumpRelationJob.main(new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-outputPath", workingDir.toString() + "/relation", "-sourcePath", sourcePath, "-removeSet", "isParticipant" }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/relation") .map(item -> OBJECT_MAPPER.readValue(item, Relation.class)); org.apache.spark.sql.Dataset verificationDataset = spark .createDataset(tmp.rdd(), Encoders.bean(Relation.class)); verificationDataset.createOrReplaceTempView("table"); verificationDataset .foreach((ForeachFunction) r -> System.out.println(new ObjectMapper().writeValueAsString(r))); Dataset check = spark .sql( "SELECT reltype.name, source.id source, source.type stype, target.id target,target.type ttype, provenance.provenance " + "from table "); Assertions.assertEquals(22, check.filter("name = 'isProvidedBy'").count()); Assertions .assertEquals( 22, check .filter( "name = 'isProvidedBy' and stype = 'datasource' and ttype = 'organization' and " + "provenance = 'Harvested'") .count()); Assertions.assertEquals(0, check.filter("name = 'isParticipant'").count()); Assertions.assertEquals(1, check.filter("name = 'isAuthorInstitutionOf'").count()); Assertions .assertEquals( 1, check .filter( "name = 'isAuthorInstitutionOf' and stype = 'organization' and ttype = 'result' " + "and provenance = 'Inferred by OpenAIRE'") .count()); } @Test public void test4() throws Exception {// final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/relation/relation") .getPath(); SparkDumpRelationJob.main(new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-outputPath", workingDir.toString() + "/relation", "-sourcePath", sourcePath, "-removeSet", "isParticipant;isAuthorInstitutionOf" }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/relation") .map(item -> OBJECT_MAPPER.readValue(item, Relation.class)); org.apache.spark.sql.Dataset verificationDataset = spark .createDataset(tmp.rdd(), Encoders.bean(Relation.class)); verificationDataset.createOrReplaceTempView("table"); verificationDataset .foreach((ForeachFunction) r -> System.out.println(new ObjectMapper().writeValueAsString(r))); Dataset check = spark .sql( "SELECT reltype.name, source.id source, source.type stype, target.id target,target.type ttype, provenance.provenance " + "from table "); Assertions.assertEquals(22, check.filter("name = 'isProvidedBy'").count()); Assertions .assertEquals( 22, check .filter( "name = 'isProvidedBy' and stype = 'datasource' and ttype = 'organization' and " + "provenance = 'Harvested'") .count()); Assertions.assertEquals(0, check.filter("name = 'isParticipant'").count()); Assertions.assertEquals(0, check.filter("name = 'isAuthorInstitutionOf'").count()); } }