package eu.dnetlib.dhp; import static eu.dnetlib.dhp.PropagationConstant.isSparkSessionManaged; import static eu.dnetlib.dhp.PropagationConstant.readPath; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.resulttocommunityfromorganization.SparkResultToCommunityFromOrganizationJob; import eu.dnetlib.dhp.schema.common.ModelSupport; import eu.dnetlib.dhp.schema.oaf.Result; /** * @author miriam.baglioni * @Date 15/01/24 */ public class MoveResult implements Serializable { private static final Logger log = LoggerFactory.getLogger(MoveResult.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( MoveResult.class .getResourceAsStream( "/eu/dnetlib/dhp/wf/subworkflows/input_moveresult_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = isSparkSessionManaged(parser); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { moveResults(spark, inputPath, outputPath); }); } public static void moveResults(SparkSession spark, String inputPath, String outputPath) { ModelSupport.entityTypes .keySet() .parallelStream() .filter(e -> ModelSupport.isResult(e)) // .parallelStream() .forEach(e -> { Class resultClazz = ModelSupport.entityTypes.get(e); Dataset resultDataset = readPath(spark, inputPath + e.name(), resultClazz); if (resultDataset.count() > 0) { resultDataset .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(outputPath + e.name()); } }); } }