package eu.dnetlib.dhp.actionmanager.createunresolvedentities; import static eu.dnetlib.dhp.actionmanager.Constants.*; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import java.util.ArrayList; import java.util.List; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.api.java.function.MapGroupsFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.actionmanager.createunresolvedentities.model.SDGDataModel; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.schema.common.ModelConstants; import eu.dnetlib.dhp.schema.oaf.Result; import eu.dnetlib.dhp.schema.oaf.StructuredProperty; import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils; import eu.dnetlib.dhp.utils.DHPUtils; public class PrepareSDGSparkJob implements Serializable { private static final Logger log = LoggerFactory.getLogger(PrepareSDGSparkJob.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( PrepareSDGSparkJob.class .getResourceAsStream( "/eu/dnetlib/dhp/actionmanager/createunresolvedentities/prepare_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = isSparkSessionManaged(parser); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); String sourcePath = parser.get("sourcePath"); log.info("sourcePath: {}", sourcePath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { doPrepare( spark, sourcePath, outputPath); }); } private static void doPrepare(SparkSession spark, String sourcePath, String outputPath) { Dataset sdgDataset = readPath(spark, sourcePath, SDGDataModel.class); sdgDataset .groupByKey((MapFunction) r -> r.getDoi().toLowerCase(), Encoders.STRING()) .mapGroups((MapGroupsFunction) (k, it) -> { Result r = new Result(); r.setId(DHPUtils.generateUnresolvedIdentifier(k, DOI)); SDGDataModel first = it.next(); List sbjs = new ArrayList<>(); sbjs.add(getSubject(first.getSbj(), SDG_CLASS_ID, SDG_CLASS_NAME, UPDATE_SUBJECT_SDG_CLASS_ID)); it .forEachRemaining( s -> sbjs .add(getSubject(s.getSbj(), SDG_CLASS_ID, SDG_CLASS_NAME, UPDATE_SUBJECT_SDG_CLASS_ID))); r.setSubject(sbjs); r .setDataInfo( OafMapperUtils .dataInfo( false, null, true, false, OafMapperUtils .qualifier( ModelConstants.PROVENANCE_ENRICH, null, ModelConstants.DNET_PROVENANCE_ACTIONS, ModelConstants.DNET_PROVENANCE_ACTIONS), null)); return r; }, Encoders.bean(Result.class)) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(outputPath + "/sdg"); } }