package eu.dnetlib.dhp.collection; import java.io.File; import java.io.FileOutputStream; import java.io.FileReader; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import org.apache.commons.io.FileUtils; import org.apache.commons.io.IOUtils; import org.apache.hadoop.io.IntWritable; import org.apache.hadoop.io.Text; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoder; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.*; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.data.mdstore.manager.common.model.MDStoreVersion; import eu.dnetlib.dhp.model.mdstore.MetadataRecord; @TestMethodOrder(MethodOrderer.OrderAnnotation.class) public class GenerateNativeStoreSparkJobTest { private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static SparkSession spark; private static Path workingDir; private static Encoder encoder; private static final String encoding = "XML"; private static final String dateOfCollection = System.currentTimeMillis() + ""; private static final String xpath = "//*[local-name()='header']/*[local-name()='identifier']"; private static String provenance; private static final Logger log = LoggerFactory.getLogger(GenerateNativeStoreSparkJobTest.class); @BeforeAll public static void beforeAll() throws IOException { provenance = IOUtils.toString(GenerateNativeStoreSparkJobTest.class.getResourceAsStream("provenance.json")); workingDir = Files.createTempDirectory(GenerateNativeStoreSparkJobTest.class.getSimpleName()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(GenerateNativeStoreSparkJobTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); encoder = Encoders.bean(MetadataRecord.class); spark = SparkSession .builder() .appName(GenerateNativeStoreSparkJobTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } @Test @Order(1) public void testGenerateNativeStoreSparkJobRefresh() throws Exception { MDStoreVersion mdStoreV1 = prepareVersion("mdStoreVersion_1.json"); FileUtils.forceMkdir(new File(mdStoreV1.getHdfsPath())); IOUtils .copy( getClass().getResourceAsStream("sequence_file"), new FileOutputStream(mdStoreV1.getHdfsPath() + "/sequence_file")); GenerateNativeStoreSparkJob .main( new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-encoding", encoding, "-dateOfCollection", dateOfCollection, "-provenance", provenance, "-xpath", xpath, "-mdStoreVersion", OBJECT_MAPPER.writeValueAsString(mdStoreV1), "-readMdStoreVersion", "", "-workflowId", "abc" }); verify(mdStoreV1); } @Test @Order(2) public void testGenerateNativeStoreSparkJobIncremental() throws Exception { MDStoreVersion mdStoreV2 = prepareVersion("mdStoreVersion_2.json"); FileUtils.forceMkdir(new File(mdStoreV2.getHdfsPath())); IOUtils .copy( getClass().getResourceAsStream("sequence_file"), new FileOutputStream(mdStoreV2.getHdfsPath() + "/sequence_file")); MDStoreVersion mdStoreV1 = prepareVersion("mdStoreVersion_1.json"); GenerateNativeStoreSparkJob .main( new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-encoding", encoding, "-dateOfCollection", dateOfCollection, "-provenance", provenance, "-xpath", xpath, "-mdStoreVersion", OBJECT_MAPPER.writeValueAsString(mdStoreV2), "-readMdStoreVersion", OBJECT_MAPPER.writeValueAsString(mdStoreV1), "-workflowId", "abc" }); verify(mdStoreV2); } protected void verify(MDStoreVersion mdStoreVersion) throws IOException { Assertions.assertTrue(new File(mdStoreVersion.getHdfsPath()).exists()); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); long seqFileSize = sc .sequenceFile(mdStoreVersion.getHdfsPath() + "/sequence_file", IntWritable.class, Text.class) .count(); final Dataset mdstore = spark.read().load(mdStoreVersion.getHdfsPath() + "/store").as(encoder); long mdStoreSize = mdstore.count(); long declaredSize = Long.parseLong(IOUtils.toString(new FileReader(mdStoreVersion.getHdfsPath() + "/size"))); Assertions.assertEquals(seqFileSize, declaredSize, "the size must be equal"); Assertions.assertEquals(seqFileSize, mdStoreSize, "the size must be equal"); long uniqueIds = mdstore .map((MapFunction) MetadataRecord::getId, Encoders.STRING()) .distinct() .count(); Assertions.assertEquals(seqFileSize, uniqueIds, "the size must be equal"); } private MDStoreVersion prepareVersion(String filename) throws IOException { MDStoreVersion mdstore = OBJECT_MAPPER .readValue(IOUtils.toString(getClass().getResource(filename)), MDStoreVersion.class); mdstore.setHdfsPath(String.format(mdstore.getHdfsPath(), workingDir.toString())); return mdstore; } }