package eu.dnetlib.dhp.resulttoorganizationfromsemrel; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import org.apache.commons.io.FileUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.api.java.function.FilterFunction; import org.apache.spark.api.java.function.ForeachFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.AfterAll; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.KeyValueSet; import eu.dnetlib.dhp.PropagationConstant; import eu.dnetlib.dhp.schema.common.ModelConstants; import eu.dnetlib.dhp.schema.oaf.Relation; public class StepActionsTest { private static final Logger log = LoggerFactory.getLogger(StepActionsTest.class); private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static SparkSession spark; private static Path workingDir; @BeforeAll public static void beforeAll() throws IOException { workingDir = Files.createTempDirectory(StepActionsTest.class.getSimpleName()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(PrepareInfoJobTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); spark = SparkSession .builder() .appName(PrepareInfoJobTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } @Test public void execStepTest() { StepActions .execStep( spark, getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/") .getPath(), workingDir.toString() + "/newRelationPath", getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/currentIteration/") .getPath(), getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/childParentOrg/") .getPath(), getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/resultOrganization/") .getPath()); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/newRelationPath") .map(item -> OBJECT_MAPPER.readValue(item, Relation.class)); Assertions.assertEquals(4, tmp.count()); Dataset verificationDs = spark.createDataset(tmp.rdd(), Encoders.bean(Relation.class)); verificationDs .foreach( (ForeachFunction) r -> Assertions .assertEquals("propagation", r.getDataInfo().getInferenceprovenance())); verificationDs .foreach((ForeachFunction) r -> Assertions.assertEquals("0.85", r.getDataInfo().getTrust())); verificationDs .foreach((ForeachFunction) r -> Assertions.assertEquals("50|", r.getSource().substring(0, 3))); verificationDs .foreach((ForeachFunction) r -> Assertions.assertEquals("20|", r.getTarget().substring(0, 3))); verificationDs .foreach( (ForeachFunction) r -> Assertions .assertEquals(ModelConstants.HAS_AUTHOR_INSTITUTION, r.getRelClass())); verificationDs .foreach( (ForeachFunction) r -> Assertions .assertEquals(ModelConstants.RESULT_ORGANIZATION, r.getRelType())); verificationDs .foreach( (ForeachFunction) r -> Assertions .assertEquals(ModelConstants.AFFILIATION, r.getSubRelType())); verificationDs .foreach( (ForeachFunction) r -> Assertions .assertEquals( PropagationConstant.PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_ID, r.getDataInfo().getProvenanceaction().getClassid())); verificationDs .foreach( (ForeachFunction) r -> Assertions .assertEquals( PropagationConstant.PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_NAME, r.getDataInfo().getProvenanceaction().getClassname())); verificationDs .filter( (FilterFunction) r -> r .getSource() .equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")) .foreach( (ForeachFunction) r -> Assertions .assertEquals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074", r.getTarget())); verificationDs .filter( (FilterFunction) r -> r .getSource() .equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")) .foreach( (ForeachFunction) r -> Assertions .assertEquals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f", r.getTarget())); Assertions .assertEquals( 2, verificationDs .filter( (FilterFunction) r -> r .getSource() .equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")) .count()); Assertions .assertEquals( 1, verificationDs .filter( (FilterFunction) r -> r .getSource() .equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d") && r.getTarget().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")) .count()); Assertions .assertEquals( 1, verificationDs .filter( (FilterFunction) r -> r .getSource() .equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d") && r.getTarget().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")) .count()); tmp.foreach(r -> System.out.println(OBJECT_MAPPER.writeValueAsString(r))); } @Test public void prepareForNextStepLeavesTest() { StepActions .prepareForNextStep( spark, getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/relsforiteration1/") .getPath(), getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/resultOrganization/") .getPath(), getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/currentIteration/") .getPath(), getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/childParentOrg/") .getPath(), workingDir.toString() + "/tempLeaves", workingDir.toString() + "/tempOrgs"); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/tempLeaves") .map(item -> OBJECT_MAPPER.readValue(item, Leaves.class)); Assertions.assertEquals(3, tmp.count()); Assertions .assertEquals( 1, tmp.filter(l -> l.getValue().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count()); Assertions .assertEquals( 1, tmp.filter(l -> l.getValue().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count()); Assertions .assertEquals( 1, tmp.filter(l -> l.getValue().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count()); } @Test public void prepareFonNextStepOrgTest() { StepActions .prepareForNextStep( spark, getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/relsforiteration1/") .getPath(), getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/resultOrganization/") .getPath(), getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/currentIteration/") .getPath(), getClass() .getResource( "/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/childParentOrg/") .getPath(), workingDir.toString() + "/tempLeaves", workingDir.toString() + "/tempOrgs"); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/tempOrgs") .map(item -> OBJECT_MAPPER.readValue(item, KeyValueSet.class)); Assertions.assertEquals(5, tmp.count()); Assertions .assertEquals( 1, tmp .filter(kv -> kv.getKey().equals("50|openaire____::ec653e804967133b9436fdd30d3ff51d")) .collect() .get(0) .getValueSet() .size()); Assertions .assertEquals( "20|doajarticles::1cae0b82b56ccd97c2db1f698def7074", tmp .filter(kv -> kv.getKey().equals("50|openaire____::ec653e804967133b9436fdd30d3ff51d")) .collect() .get(0) .getValueSet() .get(0)); Assertions .assertEquals( 1, tmp .filter(kv -> kv.getKey().equals("50|doajarticles::03748bcb5d754c951efec9700e18a56d")) .collect() .get(0) .getValueSet() .size()); Assertions .assertEquals( "20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f", tmp .filter(kv -> kv.getKey().equals("50|doajarticles::03748bcb5d754c951efec9700e18a56d")) .collect() .get(0) .getValueSet() .get(0)); Assertions .assertEquals( 4, tmp .filter(kv -> kv.getKey().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")) .collect() .get(0) .getValueSet() .size()); Assertions .assertTrue( tmp .filter(kv -> kv.getKey().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")) .collect() .get(0) .getValueSet() .contains("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")); Assertions .assertTrue( tmp .filter(kv -> kv.getKey().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")) .collect() .get(0) .getValueSet() .contains("20|doajarticles::396262ee936f3d3e26ff0e60bea6cae0")); Assertions .assertTrue( tmp .filter(kv -> kv.getKey().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")) .collect() .get(0) .getValueSet() .contains("20|pippo_wf_001::2899e571609779168222fdeb59cb916d")); Assertions .assertTrue( tmp .filter(kv -> kv.getKey().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")) .collect() .get(0) .getValueSet() .contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")); Assertions .assertEquals( 2, tmp .filter(kv -> kv.getKey().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")) .collect() .get(0) .getValueSet() .size()); Assertions .assertTrue( tmp .filter(kv -> kv.getKey().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")) .collect() .get(0) .getValueSet() .contains("20|opendoar____::a5fcb8eb25ebd6f7cd219e0fa1e6ddc1")); Assertions .assertTrue( tmp .filter(kv -> kv.getKey().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")) .collect() .get(0) .getValueSet() .contains("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074")); Assertions .assertEquals( 3, tmp .filter(kv -> kv.getKey().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")) .collect() .get(0) .getValueSet() .size()); Assertions .assertTrue( tmp .filter(kv -> kv.getKey().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")) .collect() .get(0) .getValueSet() .contains("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")); Assertions .assertTrue( tmp .filter(kv -> kv.getKey().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")) .collect() .get(0) .getValueSet() .contains("20|pippo_wf_001::2899e571609779168222fdeb59cb916d")); Assertions .assertTrue( tmp .filter(kv -> kv.getKey().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")) .collect() .get(0) .getValueSet() .contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")); } }