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CellRemorph
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Analysis of Network Models with Neuron-Astrocyte Interactions
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Neuroinformatics
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Tampere University
Analysis of network models with neuron-astrocyte interactions
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Tampere University
Computational modeling of neuron-astrocyte interactions in large neural populations using the NEST simulator
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Journal of Computational Neuroscience
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Tampere University
Computational modeling of neuron-astrocyte interactions in networks: Experiments, theory, and models
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Tampere University
Reconstruction of Bergmann glial morphology for whole-cell calcium simulations
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Tampere University
Computational modeling of neuron-astrocyte interactions using the NEST simulator (AstroNeuronNets)
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2023
Human Brain Project Summit 2023, Marseille, France, 28/03/23
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Tampere University
Computational modelling of neuron-astrocyte interactions in the NEST simulator
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2023
15th Göttingen Meeting of the German Neuroscience Society, Göttingen, Germany, 22/03/23
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Tampere University
Integrating wet-lab data, computational models and tools in EBRAINS digital neuroscience platform for better understanding of the human brain
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2023
MET Research Day 2023, Tampere, Finland, 30/11/23
2023-11-10T00:08:55.429Z
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Tampere University
Interaction schemes and spatial organization of cells in computational models of neuron-astrocyte networks
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2023
Human Brain Project Summit 2023, Marseille, France, 28/03/23
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Tampere University
Neuron–Glia Interactions and Brain Circuits
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04
27
Computational Modelling of the Brain
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Tampere University
Astrocytic modulation of synaptic plasticity: How to integrate biological knowledge, computational modeling, and model sensitivity analysis
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2022
51st Annual Meeting of the Society for Neuroscience (SFN 2022), San Diego, United States, 12/11/22
2022-12-14T23:34:35.214Z
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Tampere University
Calcium dynamics simulations with morphologically detailed reconstruction of cerebellar astroglial cell model
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2022
MET Research Day 2022, Tampere, Finland, 24/11/22
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Tampere University
Calcium dynamics simulations with morphologically-detailed reconstruction of Bergmann glial cell model
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2022
FENS Forum of Neuroscience 2022, Paris, France, 9/07/22
2022-12-14T23:34:35.220Z
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Tampere University
Computational modeling of neuron-astrocyte interactions in the NEST simulator
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2022
INM IBI Retreat, Jülich, Germany, 18/10/22
2023-02-16T00:00:45.671Z
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Tampere University
Modeling spiking networks with neuron-glia interactions in NEST
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2022
NEST Conference 2022, 23/06/22
2023-07-20T23:04:42.594Z
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Tampere University
Sensitivity analysis of biophysically-detailed tripartite synapse model
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2022
9th Conference on Foundations of Systems Biology in Engineering (FOSBE 2022)
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Tampere University
Sensitivity analysis of cortical synapse model with Uncertainpy
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2022
MET Research Day 2022, Tampere, Finland, 24/11/22
2022-10-26T22:35:57.768Z
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Tampere University
The role of astrocytes in somatosensory synaptic plasticity during development: Integration of data and computational modeling
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2022
FENS Forum of Neuroscience 2022, Paris, France, 9/07/22
2022-06-02T17:42:49.229Z
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Tampere University
AstroNeuronNets: Computational modeling of neuron-glia interaction in large-scale brain systems
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2021
Human Brain Project Summit 2021 - Pushing the Boundaries of Brain Research, 12/10/21
2022-06-02T11:34:19.078Z
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10.1002/glia.24036
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Tampere University
Astrocytic modulation of cortical synaptic plasticity
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2021
Glia
2022-06-02T16:43:15.636Z
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Tampere University
Astrocytic modulation of synaptic transmission and plasticity in developing somatosensory cortex
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2021
30th Annual Computational Neuroscience Meeting CNS*2021, Online, 3/07/21
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Tampere University
Computational neuroscience research group
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MET Research Day 2021, Tampere, Finland, 25/11/21
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Tampere University
In silico analysis of biochemical mechanisms responsible for astrocyte modulation of synaptic plasticity in developing somatosensory cortex
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SfN Global Connectome 2021, 11/01/21
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Tampere University
Integrating neuron-glia knowledge and computational modeling to understand cortical synaptic plasticity
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50th Annual Meeting of the Society for Neuroscience (SFN 2021), 8/11/21
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Tampere University
Morphologically-detailed reconstruction and simulation of cerebellar glial cell model
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MET Research Day 2021, Tampere, Finland, 25/11/21
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Tampere University
Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex
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PLoS Computational Biology
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Tampere University
Astrocyte simulations with realistic morphologies reveal diverse calcium transients in soma and processes
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BMC Neuroscience
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Tampere University
Biophysical modeling of astrocytes and astrocyte-neuron interactions
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FENS 2020 Virtual Forum, 11/07/20
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Tampere University
Computational modeling of neural network dynamic in vitro: the role of neuronal, synaptic and non-neuronal mechanisms in spontaneous network bursts in rodent cortical cultures
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FENS 2020 Virtual Forum, 11/07/20
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Tampere University
Morphologically detailed modeling of astrocytes to study calcium signals in soma and processes
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FENS 2020 Virtual Forum, 11/07/20
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Tampere University
Morphologically‐detailed reconstruction of cerebellar glial cells
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BMC Neuroscience
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Tampere University
NEST component for modeling spiking neuron-astrocyte networks
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NEST Conference 2020, 29/06/20
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Tampere University
The interplay of neural mechanisms regulates spontaneous cortical network activity: inferring the role of key mechanisms using data-driven modeling
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BMC Neuroscience
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Cerebellar Purkinje cells control eye movements with a rapid rate code that is invariant to spike irregularity
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eLife
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Tampere University
Cerebellar Purkinje cells control eye movements with a rapid rate code that is invariant to spike irregularity
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eLIFE
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Tampere University
Computational models of astrocytes and astrocyte-neuron interactions: Characterization, reproducibility, and future perspectives
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03
13
Computational Glioscience
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Tampere University
Computational and theoretical tools for advancing neuroscience and neuropsychiatry
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2019
MET Research Day, Tampere, Finland, 29/11/19
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Tampere University
Computational modeling of cerebellar functions
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MET Research Day, Tampere, Finland, 29/11/19
2022-06-02T08:43:51.727Z
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Tampere University
Computational models of astrocyte calcium dynamics and astrocyte-neuron interactions
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2019
28th Annual Computational Neuroscience Meeting (CNS*2019), Barcelona, Spain, 13/07/19
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Tampere University
In silico modeling of astrocytes and neuron-astrocyte interactions
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2019
International Astrocyte School (IAS 2019), Bertinoro, Italy, 7/04/19
2022-05-29T18:19:07.128Z
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2020-01-08T23:56:34.016Z
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Tampere University
Modeling the influence of neuron-astrocyte interactions on signal transmission in neuronal networks
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2019
BMC Neuroscience
2022-05-26T19:22:40.645Z
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Tiina Manninen
Computational models for calcium-mediated astrocyte functions
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Frontiers in Computational Neuroscience
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Tampere University
Computational models for calcium-mediated astrocyte functions
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Frontiers in Computational Neuroscience
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Tampere University
Altered synaptic signaling due to β-amyloid interference in astrocytes
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EMBEC and NBC 2017 - Joint Conference of the European Medical and Biological Engineering Conference EMBEC 2017 and the Nordic-Baltic Conference on Biomedical Engineering and Medical Physics, NBC 2017
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Tampere University
Challenges in reproducibility, replicability, and comparability of computational models and tools for neuronal and glial networks, cells, and subcellular structures
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2018
Frontiers in Neuroinformatics
2022-06-02T08:43:51.732Z
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Tampere University
Computational and theoretical tools for advancing neuroscience: from molecules to networks
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2018
Biomeditech & med research day, Tampere, Finland, 23/11/18
2022-05-27T19:45:47.872Z
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10.1186/s12868-018-0452-x
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2019-01-30T23:52:23.773Z
2022-05-27T19:45:47.872Z
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Tampere University
Computational modeling of neuron-astrocyte interactions: Evolution, reproducibility, comparability and future development of models
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2018
BMC Neuroscience
2022-06-02T08:43:51.721Z
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Tampere University
Computational models of astrocytes and neuron-astrocyte interactions to promote understanding of synaptic function and dysfunction
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2018
Neuroplasticity: From Bench to Machine Learning, Guildford, United Kingdom, 13/07/18
2022-06-02T08:43:51.755Z
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Tampere University
In silico modeling of astrocytes and neuron-astrocyte interactions
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2018
Neuroscience 2013, Nov 9-13, San Diego, California, 1/01/13
2022-06-02T08:43:51.716Z
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2021-11-12T23:28:17.055Z
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Tampere University
Astrocyte-modulated synaptic plasticity in sensory cortex in health and pathology: A computational study
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2017
47th Annual Meeting of the Society for Neuroscience (SFN 2017), Washington, United States, 11/11/17
2022-05-26T09:51:33.186Z
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32648b4a-bca0-4d2b-8af9-d53f58793afc
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2017-12-15T23:58:46.198Z
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Tampere University
Astrocyte-modulated synaptic plasticity in sensory cortex: A computational study
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2017
BMC Neuroscience
2022-05-26T08:52:19.369Z
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10.1002/glia.v65.S1
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2017-11-30T00:13:49.706Z
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Tampere University
Computational modeling of glial-neuronal interactions
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2017
Glia
2022-05-26T08:52:19.377Z
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2017-11-30T00:13:49.712Z
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Tampere University
Modeling neuron-astrocyte interactions: towards understanding synaptic plasticity and learning in the brain
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2017
Intelligent Computing Theories and Application
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10.3389/fninf.2017.00011
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2017-08-28T12:54:33.008Z
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Tampere University
Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability
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2017
Frontiers in Neuroinformatics
2022-05-26T10:06:48.771Z
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10.7717/peerj-cs.142
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2017-12-20T23:58:50.709Z
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Tampere University
Sustainable computational science: the ReScience initiative
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2017
PeerJ Computer Science
2022-06-02T08:43:51.709Z
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2021-11-12T23:28:17.053Z
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Tampere University
Astrocyte-neuron interactions in long-term plasticity: a computational study
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https://researchportal.tuni.fi/en/publications/2f0c0a22-2895-49bb-a814-85e55d5cb4ab
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2016
The 46th Annual Meeting of the Society for Neuroscience, SFN 2016, San Diego, CA, USA, 12-16 November 2016, San Diego, United States, 12/11/16
2022-06-02T08:43:51.701Z
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2021-11-12T23:28:17.050Z
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Tampere University
Astrocyte-neuron interactions in vitro and in vivo: Evaluation of computational models
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https://researchportal.tuni.fi/en/publications/33b2c0a1-30b5-4aaf-a444-3ed4ba0c5c29
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2016
10th FENS Forum of Neuroscience, Copenhagen, Denmark, 2/07/16
2022-05-25T22:51:07.752Z
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70f8cd58-7f1f-4ac4-bdb3-d3bc88260910
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2017-08-28T12:54:33.010Z
2022-05-25T22:51:07.752Z
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Tampere University
Extending computational models of astrocyte-neuron interactions with biochemical mechanisms on the postsynaptic terminal
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https://researchportal.tuni.fi/en/publications/70f8cd58-7f1f-4ac4-bdb3-d3bc88260910
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2015
BMC Neuroscience
2022-05-25T22:51:07.741Z
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2017-08-28T12:54:33.010Z
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Tampere University
How temporal variation affects downstream neurons through deep cerebellar nuclei model
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conference-paper
2015
Annual Biomedical Research Conference for Minority Student, ABRCMS 2015, Seattle, WA, USA, 11-14 November, 2015
2022-05-25T22:51:07.736Z
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2017-08-28T12:54:33.009Z
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Tampere University
Modeling cortical neuroplasticity and synaptic functions: Implications for future neuroscience, medicine, and computing
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2015
BioMediTech Research Day, Tampere, Finland, 4 Dec 2015
2022-05-25T22:51:07.730Z
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10.1186/1471-2202-16-S1-P147
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Tampere University
Numerical characterization of noisy fluctuations in two different types of stochastic differential equation models of neural signaling
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2015
BMC Neuroscience
2022-05-25T22:51:07.723Z
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Tampere University
Regular and irregular stimuli result in changes in mice eye movement and cerebellar nuclei neuron model behavior
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2015
BMC Neuroscience
2022-05-25T22:51:07.758Z
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Tampere University
Contribution of amyloid beta to intracellular calcium signals in astrocytes: a computational study
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2012
The 42nd Annual Meeting of the Society for Neuroscience, SFN 2012, New Orleans, LA, USA, 13-17 October 2012
2022-05-25T22:51:07.790Z
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Europe PubMed Central
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Tiina Manninen
Computational study of noise in a large signal transduction network.
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Tiina Manninen
Computational study of noise in a large signal transduction network
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2011
BMC Bioinformatics
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Tampere University
Computational study of noise in a large signal transduction network
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2011
BMC Bioinformatics
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Tampere University
Contribution Of SERCA And IP3 Sensitivity to Calcium Signaling in Astrocytes: A Computational Study
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2011
BMC Neuroscience
2022-05-25T22:51:07.777Z
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Effects of transmitters and amyloid-beta peptide on calcium signals in rat cortical astrocytes: Fura-2AM measurements and stochastic model simulations.
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Effects of transmitters and amyloid-beta peptide on calcium signals in rat cortical astrocytes: Fura-2AM measurements and stochastic model simulations
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PLoS ONE
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Tampere University
Effects of Transmitters and Amyloid-Beta Peptide on Calcium Signals in Rat Cortical Astrocytes: Fura-2AM Measurements and Stochastic Model Simulations
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PLoS ONE
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Modeling signal transduction leading to synaptic plasticity: evaluation and comparison of five models.
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Eurasip Journal on Bioinformatics and Systems Biology
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Tampere University
Modeling Signal Transduction Leading to Synaptic Plasticity: Evaluation and Comparison of Five Models
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Eurasip Journal on Bioinformatics and Systems Biology
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Tampere University
Studying the quality of noise in a large biochemical reaction network as a function of the system volume
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The International Conference on Applied Mathematics, Modeling and Computational Science, AMMCS 2011, 25 - 29 July, Waterloo, Ontario, Canada
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Tampere University
Calcium signaling in astrocytes: modeling Fura-2AM measurements
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Frontiers in Neuroscience
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Tampere University
Comparing two stochastic differential equation models for protein kinase C activation pathway
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Abstracts of Papers, Posters and Talks presented at the 2010 Joint RECOMB Satellite Conference on Systems Biology - Regulatory Genomics - DREAM5, New York, USA, 16-20 November 2010
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Comparison of discrete- and continuous-state stochastic methods to model neuronal signal transduction
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2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010
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Tampere University
Comparison of discrete- and continuous-state stochastic methods to model neuronal signal transduction
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Proceedings of ACM International Conference on Bioinformatics and Computational Biology BCB10, Niagara Falls, New York, USA, August 2-4, 2010
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Tampere University
Computational models for synaptic plasticity
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3rd INCF National Node of Finland Workshop on Neuroinformatics, Tampere, Finland, 21 September 2010
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Tampere University
Modeling signal transduction in synaptic plasticity: comparison of models and methods
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BMC Neuroscience
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Tampere University
Neurotransmitter and amyloid-β peptide induced calcium signaling in astrocytes
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2010
Joint Meeting on New Horizons in Calcium Signaling, Beijing, China, 10-13 October 2010
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Tiina Manninen
Postsynaptic signal transduction models for long-term potentiation and depression.
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Postsynaptic signal transduction models for long-term potentiation and depression
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Frontiers in Computational Neuroscience
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Tampere University
Postsynaptic signal transduction models for long-term potentiation and depression
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Frontiers in Computational Neuroscience
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Modeling biochemical systems: analysis in time and frequency domain
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Proceedings of FOSBE 2009, Foundations of Systems Biology in Engineering, Englewood, Colorado, USA, 9-12 August 2009
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Tampere University
Modeling protein kinase C activation in the presence of calcium ion fluctuations
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2009
Proceedings of the Sixth International Workshop on Computational Systems Biology, WCSB 2009, Aarhus, Denmark 10-12 June 2009
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Tampere University
Proceedings of the 6th International Workshop on Computational Systems Biology, WCSB 2009, Aarhus, Denmark, 10-12 June 2009
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2009
Tampere University of Technology, Tampere International Center for Signal Processing, TICSP Series
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Tampere University
Computational model for astroglial cell function in Alzheimer's disease
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Frontiers in Neuroinformatics
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Tampere University
Evaluation of deterministic and stochastic simulation tools for cellular signaling
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Frontiers in Neuroinformatics
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Tampere University
Kemiallisten reaktioiden mallintaminen ja tietokonesimulaatiot
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Solubiologi
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Tampere University
Modeling IP3 receptor function using stochastic approaches
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Proceedings of the Fifth International Workshop on Computational Systems Biology, WCSB 2008, Leipzig, Germany, 11-13 June 2008
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Modeling amyloid-β and serotonin induced calcium oscillations in astrocytes
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Abstracts of Neuroscience 2008, Washington D. C., 15-19 November 2008
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Modeling long-term potentiation: deterministic and stochastic approaches
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Frontiers in Neuroinformatics
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Modeling perspective to Ca2+ oscillations in astrocytes induced by amyloid-Β peptide and serotonin
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Workshop on Update in Alzheimer's Disease Research, Westminister, MD, USA, 12-14 November 2008
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Stochastic kinetic simulations of activity-dependent plastic modifications in neurons
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Proceedings of the Fifth International Workshop on Computational Systems Biology, WCSB 2008, Leipzig, Germany, 11-13 June 2008
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Tampere University
Stochastic modeling of neuronal signaling
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Frontiers in Neuroinformatics
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GENSIPS'07 - 5th IEEE International Workshop on Genomic Signal Processing and Statistics
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Estimation of neuronal signaling model parameters using deterministic and stochastic in silico training data: evaluation of four parameter estimation methods
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Proceedings of the Fifth IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'07, Tuusula, Finland, 10-12 June 2007
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Parameter estimation and tuning of firefly luciferase pathway model
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Proceedings of the Fifth IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'07, Tuusula, Finland, 10-12 June 2007
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Sequential Monte Carlo based maximum likelihood estimation for calcium binding reactions
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Proceedings of the 2nd Conference on Foundations of Systems Biology in Engineering, FOSBE 2007, Stuttgart, Germany, 9-12 September 2007
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Tampere University
Stochastic methods for modeling intracellular signaling
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Tampereen teknillinen yliopisto. Julkaisu
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Stochastic simulation tools for cellular signaling: survey, evaluation and quantitative analysis
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Proceedings of the 2nd Conference on Foundations of Systems Biology in Engineering, FOSBE 2007, Stuttgart, Germany, 9-12 September 2007
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Developing Ito stochastic differential equation models for neuronal signal transduction pathways.
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08
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Developing Itô stochastic differential equation models for neuronal signal transduction pathways
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Computational Biology and Chemistry
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Tampere University
Developing Ito stochastic differential equation models for neuronal signal transduction pathways
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Computational Biology and Chemistry
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A novel approach to model neuronal signal transduction using stochastic differential equations
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Neurocomputing
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Tampere University
A novel approach to model neuronal signal transduction using stochastic differential equations
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Neurocomputing
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Discrete stochastic simulation of cell signaling: comparison of computational tools.
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Discrete stochastic simulation of cell signaling: Comparison of computational tools
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Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings
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Tampere University
Discrete stochastic simulation of cell signaling: comparison of computational tools
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Proceedings of the 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC, New York City, USA, August 30 - September 3, 2006
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Tampere University
Modeling neuronal signal transduction using Itô stochastic differential equations and the Gillespie stochastic simulation algorithm
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Proceedings of the IASTED International Conference on Computational and Systems Biology, Dallas, Texas, USA, 13-14 November 2006
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Proceedings of the 4th TICSP Workshop on Computational Systems Biology, WCSB 2006, Tampere, Finland, 12-13 June 2006
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Tampere University Of Technology, Tampere International Center for Signal Processing, TICSP Series
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Simulation study of deterministic differential equation model for protein kinase C signaling: sensitivity of stimuli, parameter values, and initial concentrations
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Proceedings of the 4th TICSP Workshop on Computational Systems Biology, WCSB 2006, Tampere, Finland, 12-13 June 2006. TICSP series
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15358616
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Europe PubMed Central
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Tiina Manninen
Simulation tools for biochemical networks: evaluation of performance and usability.
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journal-article
2005
02
2016-09-21T17:59:59.995Z
2022-05-25T04:26:23.104Z
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Scopus - Elsevier
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Tiina Manninen
Simulation tools for biochemical networks: Evaluation of performance and usability
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10.1093/bioinformatics/bti018
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journal-article
2005
Bioinformatics
2017-08-28T12:54:33.021Z
2022-05-25T22:51:07.995Z
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Tampere University
Simulation tools for biochemical networks: evaluation of performance and usability
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journal-article
2005
Bioinformatics
2022-05-25T22:51:08.014Z
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Tampere University
A program to obtain signal transduction models from a database
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https://researchportal.tuni.fi/en/publications/9b7fc5e1-5442-41d1-9319-e159defcec5a
conference-paper
2005
Proceedings of The 3rd TICSP Workshop on Computational Systems Biology, WCSB 2005, Tampere, Finland, 13-14 June 2005
2022-05-25T22:51:08.008Z
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2-s2.0-19644387496
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2017-08-28T12:54:33.022Z
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Tampere University
Incorporating stochasticity into deterministic differential equation models for neuronal signal transduction
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conference-paper
2005
Proceedings of The 3rd TICSP Workshop on Computational Systems Biology, WCSB 2005, Tampere, Finland, 13-14 June 2005
2022-05-25T22:51:08.001Z
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952-15-1365-9
9521513659
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2017-08-28T12:54:33.022Z
2022-05-25T22:51:08.001Z
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Tampere University
Proceedings of The 3rd TICSP Workshop on Computational Systems Biology, WCSB 2005
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edited-book
2005
Tampere University of Technology, Tampere International Center for Signal Processing, TICSP Series
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10.1016/j.neucom.2004.01.096
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2017-08-28T12:54:33.027Z
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Tampere University
A model integrating the cerebellar granule neuron excitability and calcium signaling pathways
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https://researchportal.tuni.fi/en/publications/2b12d8d5-ffe1-4e5f-95a8-374fb4ccf8f3
journal-article
2004
Neurocomputing
2023-06-22T00:07:57.358Z
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2017-08-28T12:54:33.026Z
2023-06-22T00:07:57.358Z
https://orcid.org/client/APP-N0TAO4G9BBK9PWHT
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Tampere University
Pienryhmä parantaa matematiikan taitoja
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journal-article
2004
Dimensio
2022-05-25T22:51:08.026Z
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952-15-1301-2
9521513012
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2017-08-28T12:54:33.026Z
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Tampere University
Simulation study of different equation model for protein kinase C signaling
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952-15-1301-2
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https://researchportal.tuni.fi/en/publications/6bcb454e-5fde-4aeb-b37e-557bd27c9e83
report
2004
Tampere University of Technology, Institute of Signal Processing, Report
2022-05-25T22:51:08.019Z
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2017-08-28T12:54:33.023Z
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Tampere University
Varying stimulus and parameter values in the PKC pathway model
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https://researchportal.tuni.fi/en/publications/df8ad827-d40d-495b-9173-21b49a9ae193
conference-paper
2004
Proceedings of the 2nd TICSP Workshop on Computational Systems Biology, WCSB'2004, Silja Opera, Helsinki-St.Petersburg, 14-16 June 2004
2022-05-25T22:51:08.042Z
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ca0966d2-a83d-42f5-9905-b6e84115ac54
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2017-08-28T12:54:33.027Z
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https://orcid.org/client/APP-N0TAO4G9BBK9PWHT
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Tampere University
Hermosolun solunsisäisten toimintojen matemaattinen mallinnus ja simulointi
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other
2003