2024-01-12T23:59:50.769Z 2023-09-27T23:12:39.432Z source-work-id 4c0ac3a6-5a96-4fff-8655-cb80580c4680 4c0ac3a6-5a96-4fff-8655-cb80580c4680 self doi 10.1007/s12021-023-09627-5 10.1007/s12021-023-09627-5 self eid 2-s2.0-85158107722 2-s2.0-85158107722 self 2023-05-11T23:04:41.983Z 2023-09-27T23:12:39.432Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University CellRemorph source-work-id 4c0ac3a6-5a96-4fff-8655-cb80580c4680 4c0ac3a6-5a96-4fff-8655-cb80580c4680 self eid 2-s2.0-85158107722 2-s2.0-85158107722 self doi 10.1007/s12021-023-09627-5 10.1007/s12021-023-09627-5 self https://researchportal.tuni.fi/en/publications/4c0ac3a6-5a96-4fff-8655-cb80580c4680 journal-article 2023 05 Neuroinformatics 2023-09-26T23:08:14.737Z doi 10.1007/s12021-023-09622-w 10.1007/s12021-023-09622-w https://doi.org/10.1007/s12021-023-09622-w self source-work-id 0add7569-3394-4418-84af-ba70066e9efb 0add7569-3394-4418-84af-ba70066e9efb self eid 2-s2.0-85150654537 2-s2.0-85150654537 self 2023-03-29T02:22:33.697Z 2023-03-29T02:22:33.697Z https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Analysis of Network Models with Neuron-Astrocyte Interactions doi 10.1007/s12021-023-09622-w 10.1007/s12021-023-09622-w https://doi.org/10.1007/s12021-023-09622-w self issn 1539-2791 1539-2791 https://portal.issn.org/resource/ISSN/1539-2791 part-of issn 1559-0089 1559-0089 https://portal.issn.org/resource/ISSN/1559-0089 part-of http://dx.doi.org/10.1007/s12021-023-09622-w journal-article 2023 03 23 Neuroinformatics 2023-03-29T23:04:09.044Z 2023-09-26T23:08:14.737Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Analysis of network models with neuron-astrocyte interactions source-work-id 0add7569-3394-4418-84af-ba70066e9efb 0add7569-3394-4418-84af-ba70066e9efb self eid 2-s2.0-85150654537 2-s2.0-85150654537 self doi 10.1007/s12021-023-09622-w 10.1007/s12021-023-09622-w self https://researchportal.tuni.fi/en/publications/0add7569-3394-4418-84af-ba70066e9efb journal-article 2023 03 Neuroinformatics 2023-04-22T23:03:33.804Z source-work-id 93d91fd0-2f67-4d75-b642-90dead70b4f7 93d91fd0-2f67-4d75-b642-90dead70b4f7 self eid 2-s2.0-85148306997 2-s2.0-85148306997 self doi 10.1007/s10827-022-00841-9 10.1007/s10827-022-00841-9 self 2023-04-13T23:02:32.786Z 2023-04-22T23:03:33.804Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational modeling of neuron-astrocyte interactions in large neural populations using the NEST simulator source-work-id 93d91fd0-2f67-4d75-b642-90dead70b4f7 93d91fd0-2f67-4d75-b642-90dead70b4f7 self eid 2-s2.0-85148306997 2-s2.0-85148306997 self doi 10.1007/s10827-022-00841-9 10.1007/s10827-022-00841-9 self https://researchportal.tuni.fi/en/publications/93d91fd0-2f67-4d75-b642-90dead70b4f7 other 2023 Journal of Computational Neuroscience 2023-11-10T00:08:55.440Z doi 10.1002/glia.24419 10.1002/glia.24419 self source-work-id 30765311-57a1-4ac1-a6cf-061e3c645842 30765311-57a1-4ac1-a6cf-061e3c645842 self eid 2-s2.0-85164267874 2-s2.0-85164267874 self source-work-id ea9acca1-3a14-41ea-9dc1-7bd942b28c74 ea9acca1-3a14-41ea-9dc1-7bd942b28c74 self 2023-11-10T00:08:55.434Z 2023-11-10T00:08:55.434Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational modeling of neuron-astrocyte interactions in networks: Experiments, theory, and models source-work-id ea9acca1-3a14-41ea-9dc1-7bd942b28c74 ea9acca1-3a14-41ea-9dc1-7bd942b28c74 self doi 10.1002/glia.24419 10.1002/glia.24419 self https://researchportal.tuni.fi/en/publications/ea9acca1-3a14-41ea-9dc1-7bd942b28c74 other 2023 Glia 2023-11-10T00:08:55.440Z 2023-11-10T00:08:55.440Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Reconstruction of Bergmann glial morphology for whole-cell calcium simulations source-work-id 30765311-57a1-4ac1-a6cf-061e3c645842 30765311-57a1-4ac1-a6cf-061e3c645842 self eid 2-s2.0-85164267874 2-s2.0-85164267874 self doi 10.1002/glia.24419 10.1002/glia.24419 version-of https://researchportal.tuni.fi/en/publications/30765311-57a1-4ac1-a6cf-061e3c645842 other 2023 Glia 2023-11-10T00:08:55.426Z source-work-id 6092190f-1187-4499-bca0-44dfdb9c41b6 6092190f-1187-4499-bca0-44dfdb9c41b6 self 2023-11-10T00:08:55.426Z 2023-11-10T00:08:55.426Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational modeling of neuron-astrocyte interactions using the NEST simulator (AstroNeuronNets) source-work-id 6092190f-1187-4499-bca0-44dfdb9c41b6 6092190f-1187-4499-bca0-44dfdb9c41b6 self https://researchportal.tuni.fi/en/publications/6092190f-1187-4499-bca0-44dfdb9c41b6 conference-abstract 2023 Human Brain Project Summit 2023, Marseille, France, 28/03/23 2023-11-10T00:08:55.423Z source-work-id 75b79d75-0f37-4e48-a46d-3680d0f9df5a 75b79d75-0f37-4e48-a46d-3680d0f9df5a self 2023-11-10T00:08:55.423Z 2023-11-10T00:08:55.423Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational modelling of neuron-astrocyte interactions in the NEST simulator source-work-id 75b79d75-0f37-4e48-a46d-3680d0f9df5a 75b79d75-0f37-4e48-a46d-3680d0f9df5a self https://researchportal.tuni.fi/en/publications/75b79d75-0f37-4e48-a46d-3680d0f9df5a conference-abstract 2023 15th Göttingen Meeting of the German Neuroscience Society, Göttingen, Germany, 22/03/23 2024-01-12T23:59:50.769Z source-work-id e22ca8b2-c61a-42bc-b434-a9f7eca4e685 e22ca8b2-c61a-42bc-b434-a9f7eca4e685 self 2024-01-12T23:59:50.769Z 2024-01-12T23:59:50.769Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Integrating wet-lab data, computational models and tools in EBRAINS digital neuroscience platform for better understanding of the human brain source-work-id e22ca8b2-c61a-42bc-b434-a9f7eca4e685 e22ca8b2-c61a-42bc-b434-a9f7eca4e685 self https://researchportal.tuni.fi/en/publications/e22ca8b2-c61a-42bc-b434-a9f7eca4e685 conference-abstract 2023 MET Research Day 2023, Tampere, Finland, 30/11/23 2023-11-10T00:08:55.429Z source-work-id e5c8172f-32dc-4f99-bfec-67c620f69f71 e5c8172f-32dc-4f99-bfec-67c620f69f71 self 2023-11-10T00:08:55.429Z 2023-11-10T00:08:55.429Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Interaction schemes and spatial organization of cells in computational models of neuron-astrocyte networks source-work-id e5c8172f-32dc-4f99-bfec-67c620f69f71 e5c8172f-32dc-4f99-bfec-67c620f69f71 self https://researchportal.tuni.fi/en/publications/e5c8172f-32dc-4f99-bfec-67c620f69f71 conference-abstract 2023 Human Brain Project Summit 2023, Marseille, France, 28/03/23 2022-11-03T00:14:12.019Z eid 2-s2.0-85129140475 2-s2.0-85129140475 self pmid 35471536 35471536 self source-work-id b540f47e-b252-46dd-82ea-ef3094e63572 b540f47e-b252-46dd-82ea-ef3094e63572 self doi 10.1007/978-3-030-89439-9_4 10.1007/978-3-030-89439-9_4 self 2022-06-29T22:29:50.771Z 2022-11-03T00:14:12.019Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Neuron–Glia Interactions and Brain Circuits source-work-id b540f47e-b252-46dd-82ea-ef3094e63572 b540f47e-b252-46dd-82ea-ef3094e63572 self eid 2-s2.0-85129140475 2-s2.0-85129140475 self pmid 35471536 35471536 self doi 10.1007/978-3-030-89439-9_4 10.1007/978-3-030-89439-9_4 self isbn 978-3-030-89439-9 9783030894399 part-of isbn 978-3-030-89438-2 9783030894382 part-of https://researchportal.tuni.fi/en/publications/b540f47e-b252-46dd-82ea-ef3094e63572 book-chapter 2022 04 27 Computational Modelling of the Brain 2022-12-14T23:34:35.217Z source-work-id 26df09ce-b3a1-4f6f-9dec-1fb4f57ab39a 26df09ce-b3a1-4f6f-9dec-1fb4f57ab39a self 2022-12-14T23:34:35.217Z 2022-12-14T23:34:35.217Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Astrocytic modulation of synaptic plasticity: How to integrate biological knowledge, computational modeling, and model sensitivity analysis source-work-id 26df09ce-b3a1-4f6f-9dec-1fb4f57ab39a 26df09ce-b3a1-4f6f-9dec-1fb4f57ab39a self https://researchportal.tuni.fi/en/publications/26df09ce-b3a1-4f6f-9dec-1fb4f57ab39a conference-abstract 2022 51st Annual Meeting of the Society for Neuroscience (SFN 2022), San Diego, United States, 12/11/22 2022-12-14T23:34:35.214Z source-work-id 0ce907d8-1018-4a44-bd54-c116807642ea 0ce907d8-1018-4a44-bd54-c116807642ea self 2022-12-14T23:34:35.214Z 2022-12-14T23:34:35.214Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Calcium dynamics simulations with morphologically detailed reconstruction of cerebellar astroglial cell model source-work-id 0ce907d8-1018-4a44-bd54-c116807642ea 0ce907d8-1018-4a44-bd54-c116807642ea self https://researchportal.tuni.fi/en/publications/0ce907d8-1018-4a44-bd54-c116807642ea conference-abstract 2022 MET Research Day 2022, Tampere, Finland, 24/11/22 2022-11-23T23:32:51.637Z source-work-id ca9165b9-107a-4e3a-a6c4-0e05fe2093d7 ca9165b9-107a-4e3a-a6c4-0e05fe2093d7 self 2022-11-23T23:32:51.637Z 2022-11-23T23:32:51.637Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Calcium dynamics simulations with morphologically-detailed reconstruction of Bergmann glial cell model source-work-id ca9165b9-107a-4e3a-a6c4-0e05fe2093d7 ca9165b9-107a-4e3a-a6c4-0e05fe2093d7 self https://researchportal.tuni.fi/en/publications/ca9165b9-107a-4e3a-a6c4-0e05fe2093d7 conference-abstract 2022 FENS Forum of Neuroscience 2022, Paris, France, 9/07/22 2022-12-14T23:34:35.220Z source-work-id 0b317082-8c2e-474d-870b-cd6719c222fd 0b317082-8c2e-474d-870b-cd6719c222fd self 2022-12-14T23:34:35.220Z 2022-12-14T23:34:35.220Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational modeling of neuron-astrocyte interactions in the NEST simulator source-work-id 0b317082-8c2e-474d-870b-cd6719c222fd 0b317082-8c2e-474d-870b-cd6719c222fd self https://researchportal.tuni.fi/en/publications/0b317082-8c2e-474d-870b-cd6719c222fd conference-abstract 2022 INM IBI Retreat, Jülich, Germany, 18/10/22 2023-02-16T00:00:45.671Z source-work-id 2d3269f5-f51d-42fb-822d-7a98d800f221 2d3269f5-f51d-42fb-822d-7a98d800f221 self 2023-02-16T00:00:45.671Z 2023-02-16T00:00:45.671Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Modeling spiking networks with neuron-glia interactions in NEST source-work-id 2d3269f5-f51d-42fb-822d-7a98d800f221 2d3269f5-f51d-42fb-822d-7a98d800f221 self https://researchportal.tuni.fi/en/publications/2d3269f5-f51d-42fb-822d-7a98d800f221 conference-abstract 2022 NEST Conference 2022, 23/06/22 2023-07-20T23:04:42.594Z source-work-id a908c30c-2bad-4ed0-ad0f-65ba16a10b23 a908c30c-2bad-4ed0-ad0f-65ba16a10b23 self doi 10.1016/j.ifacol.2023.01.025 10.1016/j.ifacol.2023.01.025 self eid 2-s2.0-85161971058 2-s2.0-85161971058 self 2023-02-16T00:00:45.675Z 2023-07-20T23:04:42.594Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Sensitivity analysis of biophysically-detailed tripartite synapse model source-work-id a908c30c-2bad-4ed0-ad0f-65ba16a10b23 a908c30c-2bad-4ed0-ad0f-65ba16a10b23 self eid 2-s2.0-85161971058 2-s2.0-85161971058 self doi 10.1016/j.ifacol.2023.01.025 10.1016/j.ifacol.2023.01.025 self https://researchportal.tuni.fi/en/publications/a908c30c-2bad-4ed0-ad0f-65ba16a10b23 conference-paper 2022 9th Conference on Foundations of Systems Biology in Engineering (FOSBE 2022) 2023-01-11T23:43:24.149Z source-work-id 72ac821c-bdfb-4b78-8b57-ee75cf9dc1e0 72ac821c-bdfb-4b78-8b57-ee75cf9dc1e0 self 2023-01-11T23:43:24.149Z 2023-01-11T23:43:24.149Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Sensitivity analysis of cortical synapse model with Uncertainpy source-work-id 72ac821c-bdfb-4b78-8b57-ee75cf9dc1e0 72ac821c-bdfb-4b78-8b57-ee75cf9dc1e0 self https://researchportal.tuni.fi/en/publications/72ac821c-bdfb-4b78-8b57-ee75cf9dc1e0 conference-abstract 2022 MET Research Day 2022, Tampere, Finland, 24/11/22 2022-10-26T22:35:57.768Z source-work-id 26f8033e-0918-4a1c-ad12-9dd8c9184cf4 26f8033e-0918-4a1c-ad12-9dd8c9184cf4 self 2022-10-26T22:35:57.768Z 2022-10-26T22:35:57.768Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University The role of astrocytes in somatosensory synaptic plasticity during development: Integration of data and computational modeling source-work-id 26f8033e-0918-4a1c-ad12-9dd8c9184cf4 26f8033e-0918-4a1c-ad12-9dd8c9184cf4 self https://researchportal.tuni.fi/en/publications/26f8033e-0918-4a1c-ad12-9dd8c9184cf4 conference-abstract 2022 FENS Forum of Neuroscience 2022, Paris, France, 9/07/22 2022-06-02T17:42:49.229Z source-work-id 7b60d5d5-aa11-4ef9-afe1-cea4d5f75747 7b60d5d5-aa11-4ef9-afe1-cea4d5f75747 self 2022-01-28T23:28:42.551Z 2022-06-02T17:42:49.229Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University AstroNeuronNets: Computational modeling of neuron-glia interaction in large-scale brain systems source-work-id 7b60d5d5-aa11-4ef9-afe1-cea4d5f75747 7b60d5d5-aa11-4ef9-afe1-cea4d5f75747 self https://researchportal.tuni.fi/en/publications/7b60d5d5-aa11-4ef9-afe1-cea4d5f75747 conference-poster 2021 Human Brain Project Summit 2021 - Pushing the Boundaries of Brain Research, 12/10/21 2022-06-02T11:34:19.078Z doi 10.1002/glia.24036 10.1002/glia.24036 self source-work-id e01f91ee-6b0c-4760-b761-6a5a229237a0 e01f91ee-6b0c-4760-b761-6a5a229237a0 self 2021-12-14T23:27:13.491Z 2022-06-02T11:34:19.078Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Astrocytic modulation of cortical synaptic plasticity source-work-id e01f91ee-6b0c-4760-b761-6a5a229237a0 e01f91ee-6b0c-4760-b761-6a5a229237a0 self doi 10.1002/glia.24036 10.1002/glia.24036 self https://researchportal.tuni.fi/en/publications/e01f91ee-6b0c-4760-b761-6a5a229237a0 other 2021 Glia 2022-06-02T16:43:15.636Z eid 2-s2.0-85122908421 2-s2.0-85122908421 self source-work-id 63869731-d3a2-4c6e-b068-dd93a05d20de 63869731-d3a2-4c6e-b068-dd93a05d20de self doi 10.1007/s10827-021-00801-9 10.1007/s10827-021-00801-9 self 2022-01-21T23:27:54.805Z 2022-06-02T16:43:15.636Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Astrocytic modulation of synaptic transmission and plasticity in developing somatosensory cortex source-work-id 63869731-d3a2-4c6e-b068-dd93a05d20de 63869731-d3a2-4c6e-b068-dd93a05d20de self eid 2-s2.0-85122908421 2-s2.0-85122908421 self doi 10.1007/s10827-021-00801-9 10.1007/s10827-021-00801-9 self https://researchportal.tuni.fi/en/publications/63869731-d3a2-4c6e-b068-dd93a05d20de conference-abstract 2021 30th Annual Computational Neuroscience Meeting CNS*2021, Online, 3/07/21 2022-06-02T11:34:19.066Z source-work-id e604bb25-6e7c-4ff4-856a-54dbc79309e3 e604bb25-6e7c-4ff4-856a-54dbc79309e3 self 2021-12-14T23:27:13.486Z 2022-06-02T11:34:19.066Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational neuroscience research group source-work-id e604bb25-6e7c-4ff4-856a-54dbc79309e3 e604bb25-6e7c-4ff4-856a-54dbc79309e3 self https://researchportal.tuni.fi/en/publications/e604bb25-6e7c-4ff4-856a-54dbc79309e3 conference-abstract 2021 MET Research Day 2021, Tampere, Finland, 25/11/21 2022-06-02T11:34:19.083Z source-work-id e26171e3-0b1f-49ca-96b7-0343dfdaa637 e26171e3-0b1f-49ca-96b7-0343dfdaa637 self 2021-12-14T23:27:13.493Z 2022-06-02T11:34:19.083Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University In silico analysis of biochemical mechanisms responsible for astrocyte modulation of synaptic plasticity in developing somatosensory cortex source-work-id e26171e3-0b1f-49ca-96b7-0343dfdaa637 e26171e3-0b1f-49ca-96b7-0343dfdaa637 self https://researchportal.tuni.fi/en/publications/e26171e3-0b1f-49ca-96b7-0343dfdaa637 conference-abstract 2021 SfN Global Connectome 2021, 11/01/21 2022-06-02T11:34:19.073Z source-work-id 4cee97fd-e11b-4d64-8eee-92b9d672cbe2 4cee97fd-e11b-4d64-8eee-92b9d672cbe2 self 2021-12-14T23:27:13.489Z 2022-06-02T11:34:19.073Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Integrating neuron-glia knowledge and computational modeling to understand cortical synaptic plasticity source-work-id 4cee97fd-e11b-4d64-8eee-92b9d672cbe2 4cee97fd-e11b-4d64-8eee-92b9d672cbe2 self https://researchportal.tuni.fi/en/publications/4cee97fd-e11b-4d64-8eee-92b9d672cbe2 conference-abstract 2021 50th Annual Meeting of the Society for Neuroscience (SFN 2021), 8/11/21 2022-06-02T16:56:18.467Z source-work-id 2b9fecf1-7c32-40c1-85bd-a1b81fc82ee8 2b9fecf1-7c32-40c1-85bd-a1b81fc82ee8 self 2022-01-24T23:28:41.097Z 2022-06-02T16:56:18.467Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Morphologically-detailed reconstruction and simulation of cerebellar glial cell model source-work-id 2b9fecf1-7c32-40c1-85bd-a1b81fc82ee8 2b9fecf1-7c32-40c1-85bd-a1b81fc82ee8 self https://researchportal.tuni.fi/en/publications/2b9fecf1-7c32-40c1-85bd-a1b81fc82ee8 conference-abstract 2021 MET Research Day 2021, Tampere, Finland, 25/11/21 2023-06-22T00:08:00.175Z eid 2-s2.0-85096029284 2-s2.0-85096029284 self pmid 33170856 33170856 self doi 10.1371/journal.pcbi.1008360 10.1371/journal.pcbi.1008360 self source-work-id 03768df1-7f92-471f-bafd-b308970e8090 03768df1-7f92-471f-bafd-b308970e8090 self 2021-09-01T00:39:10.271Z 2023-06-22T00:08:00.175Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex source-work-id 03768df1-7f92-471f-bafd-b308970e8090 03768df1-7f92-471f-bafd-b308970e8090 self eid 2-s2.0-85096029284 2-s2.0-85096029284 self pmid 33170856 33170856 self doi 10.1371/journal.pcbi.1008360 10.1371/journal.pcbi.1008360 self https://researchportal.tuni.fi/en/publications/03768df1-7f92-471f-bafd-b308970e8090 journal-article 2020 11 10 PLoS Computational Biology 2022-09-27T22:32:28.415Z source-work-id 0055c66f-9fd0-4d93-bea1-07863a28ccd3 0055c66f-9fd0-4d93-bea1-07863a28ccd3 self 2022-09-07T22:31:20.978Z 2022-09-27T22:32:28.415Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Astrocyte simulations with realistic morphologies reveal diverse calcium transients in soma and processes source-work-id 0055c66f-9fd0-4d93-bea1-07863a28ccd3 0055c66f-9fd0-4d93-bea1-07863a28ccd3 self doi 10.1186/s12868-020-00593-1 10.1186/s12868-020-00593-1 part-of https://researchportal.tuni.fi/en/publications/0055c66f-9fd0-4d93-bea1-07863a28ccd3 other 2020 BMC Neuroscience 2022-06-02T08:43:51.760Z source-work-id 1dc0564c-d38d-476b-8ec7-6e1f2cff323d 1dc0564c-d38d-476b-8ec7-6e1f2cff323d self 2021-11-12T23:28:17.067Z 2022-06-02T08:43:51.760Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Biophysical modeling of astrocytes and astrocyte-neuron interactions source-work-id 1dc0564c-d38d-476b-8ec7-6e1f2cff323d 1dc0564c-d38d-476b-8ec7-6e1f2cff323d self https://researchportal.tuni.fi/en/publications/1dc0564c-d38d-476b-8ec7-6e1f2cff323d conference-abstract 2020 FENS 2020 Virtual Forum, 11/07/20 2022-06-02T08:43:51.766Z source-work-id 2ba73cb2-7e40-4f07-9f20-030b374cbe81 2ba73cb2-7e40-4f07-9f20-030b374cbe81 self 2021-11-12T23:28:17.069Z 2022-06-02T08:43:51.766Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational modeling of neural network dynamic in vitro: the role of neuronal, synaptic and non-neuronal mechanisms in spontaneous network bursts in rodent cortical cultures source-work-id 2ba73cb2-7e40-4f07-9f20-030b374cbe81 2ba73cb2-7e40-4f07-9f20-030b374cbe81 self https://researchportal.tuni.fi/en/publications/2ba73cb2-7e40-4f07-9f20-030b374cbe81 conference-abstract 2020 FENS 2020 Virtual Forum, 11/07/20 2022-06-02T08:43:51.772Z source-work-id aff0da30-ff82-4cb2-86e9-1918c4b1802b aff0da30-ff82-4cb2-86e9-1918c4b1802b self 2021-11-12T23:28:17.070Z 2022-06-02T08:43:51.772Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Morphologically detailed modeling of astrocytes to study calcium signals in soma and processes source-work-id aff0da30-ff82-4cb2-86e9-1918c4b1802b aff0da30-ff82-4cb2-86e9-1918c4b1802b self https://researchportal.tuni.fi/en/publications/aff0da30-ff82-4cb2-86e9-1918c4b1802b conference-poster 2020 FENS 2020 Virtual Forum, 11/07/20 2022-09-07T22:31:20.983Z eid 2-s2.0-85098745160 2-s2.0-85098745160 self source-work-id 17c3a876-eb07-4ec0-b27d-7be578831323 17c3a876-eb07-4ec0-b27d-7be578831323 self 2022-09-07T22:31:20.983Z 2022-09-07T22:31:20.983Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Morphologically‐detailed reconstruction of cerebellar glial cells source-work-id 17c3a876-eb07-4ec0-b27d-7be578831323 17c3a876-eb07-4ec0-b27d-7be578831323 self eid 2-s2.0-85098745160 2-s2.0-85098745160 self doi 10.1186/s12868-020-00593-1 10.1186/s12868-020-00593-1 part-of https://researchportal.tuni.fi/en/publications/17c3a876-eb07-4ec0-b27d-7be578831323 other 2020 BMC Neuroscience 2022-06-02T08:43:51.777Z source-work-id 100b221b-9831-4432-888d-3b2d7423f8a9 100b221b-9831-4432-888d-3b2d7423f8a9 self 2021-11-12T23:28:17.072Z 2022-06-02T08:43:51.777Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University NEST component for modeling spiking neuron-astrocyte networks source-work-id 100b221b-9831-4432-888d-3b2d7423f8a9 100b221b-9831-4432-888d-3b2d7423f8a9 self https://researchportal.tuni.fi/en/publications/100b221b-9831-4432-888d-3b2d7423f8a9 conference-abstract 2020 NEST Conference 2020, 29/06/20 2023-02-24T13:20:59.897Z doi 10.1186/s12868-020-00593-1 10.1186/s12868-020-00593-1 self source-work-id ce72ab98-c1f4-43bf-8eb2-7deddb2672ab ce72ab98-c1f4-43bf-8eb2-7deddb2672ab self 2022-09-07T22:31:20.972Z 2023-02-24T13:20:59.897Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University The interplay of neural mechanisms regulates spontaneous cortical network activity: inferring the role of key mechanisms using data-driven modeling source-work-id ce72ab98-c1f4-43bf-8eb2-7deddb2672ab ce72ab98-c1f4-43bf-8eb2-7deddb2672ab self doi 10.1186/s12868-020-00593-1 10.1186/s12868-020-00593-1 self https://researchportal.tuni.fi/en/publications/ce72ab98-c1f4-43bf-8eb2-7deddb2672ab other 2020 BMC Neuroscience 2022-05-28T18:18:37.970Z eid 2-s2.0-85065589802 2-s2.0-85065589802 self doi 10.7554/elife.37102 10.7554/elife.37102 https://doi.org/10.7554/elife.37102 self source-work-id 0b43a97e-df2f-4fde-877c-fd34fc4263eb 0b43a97e-df2f-4fde-877c-fd34fc4263eb self 2019-05-11T21:49:44.462Z 2019-05-11T21:49:44.462Z https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Cerebellar Purkinje cells control eye movements with a rapid rate code that is invariant to spike irregularity doi 10.7554/elife.37102 10.7554/elife.37102 https://doi.org/10.7554/elife.37102 self issn 2050-084X 2050-084X part-of http://dx.doi.org/10.7554/elife.37102 journal-article 2019 05 03 eLife 2019-05-10T22:51:32.790Z 2022-05-28T18:18:37.970Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Cerebellar Purkinje cells control eye movements with a rapid rate code that is invariant to spike irregularity source-work-id 0b43a97e-df2f-4fde-877c-fd34fc4263eb 0b43a97e-df2f-4fde-877c-fd34fc4263eb self eid 2-s2.0-85065589802 2-s2.0-85065589802 self doi 10.7554/eLife.37102 10.7554/elife.37102 self https://researchportal.tuni.fi/en/publications/0b43a97e-df2f-4fde-877c-fd34fc4263eb journal-article 2019 eLIFE 2022-05-27T19:37:31.239Z doi https://doi.org/10.1007/978-3-030-00817-8_16 10.1007/978-3-030-00817-8_16 self source-work-id 9ddbf82d-a80e-4a6c-8306-9f152853dcac 9ddbf82d-a80e-4a6c-8306-9f152853dcac self 2019-01-29T23:52:29.515Z 2022-05-27T19:37:31.239Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational models of astrocytes and astrocyte-neuron interactions: Characterization, reproducibility, and future perspectives source-work-id 9ddbf82d-a80e-4a6c-8306-9f152853dcac 9ddbf82d-a80e-4a6c-8306-9f152853dcac self doi https://doi.org/10.1007/978-3-030-00817-8_16 10.1007/978-3-030-00817-8_16 self isbn 978-3-030-00817-8 9783030008178 part-of isbn 978-3-030-00815-4 9783030008154 part-of https://researchportal.tuni.fi/en/publications/9ddbf82d-a80e-4a6c-8306-9f152853dcac book-chapter 2019 03 13 Computational Glioscience 2022-06-02T08:43:51.749Z source-work-id 1923fb6e-6216-4311-b73c-238a3e38cdd3 1923fb6e-6216-4311-b73c-238a3e38cdd3 self 2021-11-12T23:28:17.064Z 2022-06-02T08:43:51.749Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational and theoretical tools for advancing neuroscience and neuropsychiatry source-work-id 1923fb6e-6216-4311-b73c-238a3e38cdd3 1923fb6e-6216-4311-b73c-238a3e38cdd3 self https://researchportal.tuni.fi/en/publications/1923fb6e-6216-4311-b73c-238a3e38cdd3 conference-abstract 2019 MET Research Day, Tampere, Finland, 29/11/19 2022-06-02T08:43:51.744Z source-work-id 926809b2-aad2-4ae4-824a-86d02130a51d 926809b2-aad2-4ae4-824a-86d02130a51d self 2021-11-12T23:28:17.062Z 2022-06-02T08:43:51.744Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational modeling of cerebellar functions source-work-id 926809b2-aad2-4ae4-824a-86d02130a51d 926809b2-aad2-4ae4-824a-86d02130a51d self https://researchportal.tuni.fi/en/publications/926809b2-aad2-4ae4-824a-86d02130a51d conference-abstract 2019 MET Research Day, Tampere, Finland, 29/11/19 2022-06-02T08:43:51.727Z source-work-id 4c0502b3-0406-4bbd-a4f8-6135e27955fd 4c0502b3-0406-4bbd-a4f8-6135e27955fd self 2021-11-12T23:28:17.058Z 2022-06-02T08:43:51.727Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational models of astrocyte calcium dynamics and astrocyte-neuron interactions source-work-id 4c0502b3-0406-4bbd-a4f8-6135e27955fd 4c0502b3-0406-4bbd-a4f8-6135e27955fd self https://researchportal.tuni.fi/en/publications/4c0502b3-0406-4bbd-a4f8-6135e27955fd conference-abstract 2019 28th Annual Computational Neuroscience Meeting (CNS*2019), Barcelona, Spain, 13/07/19 2022-06-02T08:43:51.738Z source-work-id d1a1626a-1f1a-4af8-942b-17509e7cc749 d1a1626a-1f1a-4af8-942b-17509e7cc749 self 2021-11-12T23:28:17.061Z 2022-06-02T08:43:51.738Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University In silico modeling of astrocytes and neuron-astrocyte interactions source-work-id d1a1626a-1f1a-4af8-942b-17509e7cc749 d1a1626a-1f1a-4af8-942b-17509e7cc749 self https://researchportal.tuni.fi/en/publications/d1a1626a-1f1a-4af8-942b-17509e7cc749 conference-abstract 2019 International Astrocyte School (IAS 2019), Bertinoro, Italy, 7/04/19 2022-05-29T18:19:07.128Z source-work-id a2e58c08-3364-47c0-ac69-e1dd29188007 a2e58c08-3364-47c0-ac69-e1dd29188007 self doi 10.1186/s12868-019-0538-0 10.1186/s12868-019-0538-0 self 2020-01-08T23:56:34.016Z 2022-05-29T18:19:07.128Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Modeling the influence of neuron-astrocyte interactions on signal transmission in neuronal networks source-work-id a2e58c08-3364-47c0-ac69-e1dd29188007 a2e58c08-3364-47c0-ac69-e1dd29188007 self doi 10.1186/s12868-019-0538-0 10.1186/s12868-019-0538-0 self https://researchportal.tuni.fi/en/publications/a2e58c08-3364-47c0-ac69-e1dd29188007 other 2019 BMC Neuroscience 2022-05-26T19:22:40.645Z eid 2-s2.0-85049072275 2-s2.0-85049072275 self doi 10.3389/fncom.2018.00014 10.3389/fncom.2018.00014 https://doi.org/10.3389/fncom.2018.00014 self source-work-id 068ea89d-98ee-4b72-846a-9c4d0834350b 068ea89d-98ee-4b72-846a-9c4d0834350b self 2018-04-04T16:16:06.222Z 2018-04-04T16:16:06.222Z https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Computational models for calcium-mediated astrocyte functions doi 10.3389/fncom.2018.00014 10.3389/fncom.2018.00014 https://doi.org/10.3389/fncom.2018.00014 self journal-article 2018 04 04 Frontiers in Computational Neuroscience 2018-04-05T22:52:00.152Z 2022-05-26T19:22:40.645Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational models for calcium-mediated astrocyte functions source-work-id 068ea89d-98ee-4b72-846a-9c4d0834350b 068ea89d-98ee-4b72-846a-9c4d0834350b self eid 2-s2.0-85049072275 2-s2.0-85049072275 self doi 10.3389/fncom.2018.00014 10.3389/fncom.2018.00014 self https://researchportal.tuni.fi/en/publications/068ea89d-98ee-4b72-846a-9c4d0834350b journal-article 2018 Frontiers in Computational Neuroscience 2022-05-25T22:51:07.717Z doi 10.1007/978-981-10-5122-7_170 10.1007/978-981-10-5122-7_170 self eid 2-s2.0-85021708806 2-s2.0-85021708806 self source-work-id eec86343-5f78-4f86-8dee-cf1d222d33d3 eec86343-5f78-4f86-8dee-cf1d222d33d3 self 2017-08-28T12:54:33.008Z 2022-05-25T22:51:07.717Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Altered synaptic signaling due to β-amyloid interference in astrocytes source-work-id eec86343-5f78-4f86-8dee-cf1d222d33d3 eec86343-5f78-4f86-8dee-cf1d222d33d3 self eid 2-s2.0-85021708806 2-s2.0-85021708806 self doi 10.1007/978-981-10-5122-7_170 10.1007/978-981-10-5122-7_170 self isbn 9789811051210 9789811051210 part-of https://researchportal.tuni.fi/en/publications/eec86343-5f78-4f86-8dee-cf1d222d33d3 conference-paper 2018 EMBEC and NBC 2017 - Joint Conference of the European Medical and Biological Engineering Conference EMBEC 2017 and the Nordic-Baltic Conference on Biomedical Engineering and Medical Physics, NBC 2017 2022-05-27T01:27:19.180Z source-work-id 99ec6501-61db-461f-b81c-861cdc4639ff 99ec6501-61db-461f-b81c-861cdc4639ff self doi 10.3389/fninf.2018.00020 10.3389/fninf.2018.00020 self eid 2-s2.0-85049113764 2-s2.0-85049113764 self 2018-06-05T22:52:00.480Z 2022-05-27T01:27:19.180Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Challenges in reproducibility, replicability, and comparability of computational models and tools for neuronal and glial networks, cells, and subcellular structures source-work-id 99ec6501-61db-461f-b81c-861cdc4639ff 99ec6501-61db-461f-b81c-861cdc4639ff self eid 2-s2.0-85049113764 2-s2.0-85049113764 self doi 10.3389/fninf.2018.00020 10.3389/fninf.2018.00020 self https://researchportal.tuni.fi/en/publications/99ec6501-61db-461f-b81c-861cdc4639ff journal-article 2018 Frontiers in Neuroinformatics 2022-06-02T08:43:51.732Z source-work-id c6dc5e37-dcba-476a-8361-d4dd61e34052 c6dc5e37-dcba-476a-8361-d4dd61e34052 self 2021-11-12T23:28:17.059Z 2022-06-02T08:43:51.732Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational and theoretical tools for advancing neuroscience: from molecules to networks source-work-id c6dc5e37-dcba-476a-8361-d4dd61e34052 c6dc5e37-dcba-476a-8361-d4dd61e34052 self https://researchportal.tuni.fi/en/publications/c6dc5e37-dcba-476a-8361-d4dd61e34052 conference-abstract 2018 Biomeditech & med research day, Tampere, Finland, 23/11/18 2022-05-27T19:45:47.872Z source-work-id 2d7453b6-b2e5-46a6-a6a8-c7ba96b4ee6e 2d7453b6-b2e5-46a6-a6a8-c7ba96b4ee6e self doi 10.1186/s12868-018-0452-x 10.1186/s12868-018-0452-x self 2019-01-30T23:52:23.773Z 2022-05-27T19:45:47.872Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational modeling of neuron-astrocyte interactions: Evolution, reproducibility, comparability and future development of models source-work-id 2d7453b6-b2e5-46a6-a6a8-c7ba96b4ee6e 2d7453b6-b2e5-46a6-a6a8-c7ba96b4ee6e self doi 10.1186/s12868-018-0452-x 10.1186/s12868-018-0452-x self https://researchportal.tuni.fi/en/publications/2d7453b6-b2e5-46a6-a6a8-c7ba96b4ee6e other 2018 BMC Neuroscience 2022-06-02T08:43:51.721Z source-work-id 3c40e3f3-83a4-4443-b8e1-e9d3caba497a 3c40e3f3-83a4-4443-b8e1-e9d3caba497a self 2021-11-12T23:28:17.056Z 2022-06-02T08:43:51.721Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational models of astrocytes and neuron-astrocyte interactions to promote understanding of synaptic function and dysfunction source-work-id 3c40e3f3-83a4-4443-b8e1-e9d3caba497a 3c40e3f3-83a4-4443-b8e1-e9d3caba497a self https://researchportal.tuni.fi/en/publications/3c40e3f3-83a4-4443-b8e1-e9d3caba497a conference-abstract 2018 Neuroplasticity: From Bench to Machine Learning, Guildford, United Kingdom, 13/07/18 2022-06-02T08:43:51.755Z source-work-id f6766530-0fb8-49bb-b28d-e1d0f0e6c7ca f6766530-0fb8-49bb-b28d-e1d0f0e6c7ca self 2021-11-12T23:28:17.065Z 2022-06-02T08:43:51.755Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University In silico modeling of astrocytes and neuron-astrocyte interactions source-work-id f6766530-0fb8-49bb-b28d-e1d0f0e6c7ca f6766530-0fb8-49bb-b28d-e1d0f0e6c7ca self https://researchportal.tuni.fi/en/publications/f6766530-0fb8-49bb-b28d-e1d0f0e6c7ca conference-abstract 2018 Neuroscience 2013, Nov 9-13, San Diego, California, 1/01/13 2022-06-02T08:43:51.716Z source-work-id 60e4cea2-2843-49e0-8c9b-60af98739255 60e4cea2-2843-49e0-8c9b-60af98739255 self 2021-11-12T23:28:17.055Z 2022-06-02T08:43:51.716Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Astrocyte-modulated synaptic plasticity in sensory cortex in health and pathology: A computational study source-work-id 60e4cea2-2843-49e0-8c9b-60af98739255 60e4cea2-2843-49e0-8c9b-60af98739255 self https://researchportal.tuni.fi/en/publications/60e4cea2-2843-49e0-8c9b-60af98739255 conference-abstract 2017 47th Annual Meeting of the Society for Neuroscience (SFN 2017), Washington, United States, 11/11/17 2022-05-26T09:51:33.186Z source-work-id 32648b4a-bca0-4d2b-8af9-d53f58793afc 32648b4a-bca0-4d2b-8af9-d53f58793afc self 2017-12-15T23:58:46.198Z 2022-05-26T09:51:33.186Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Astrocyte-modulated synaptic plasticity in sensory cortex: A computational study source-work-id 32648b4a-bca0-4d2b-8af9-d53f58793afc 32648b4a-bca0-4d2b-8af9-d53f58793afc self https://researchportal.tuni.fi/en/publications/32648b4a-bca0-4d2b-8af9-d53f58793afc other 2017 BMC Neuroscience 2022-05-26T08:52:19.369Z source-work-id ea94e870-8e7a-4604-99ec-7691f6b64b08 ea94e870-8e7a-4604-99ec-7691f6b64b08 self doi 10.1002/glia.v65.S1 10.1002/glia.v65.s1 self 2017-11-30T00:13:49.706Z 2022-05-26T08:52:19.369Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational modeling of glial-neuronal interactions source-work-id ea94e870-8e7a-4604-99ec-7691f6b64b08 ea94e870-8e7a-4604-99ec-7691f6b64b08 self doi 10.1002/glia.v65.S1 10.1002/glia.v65.s1 self https://researchportal.tuni.fi/en/publications/ea94e870-8e7a-4604-99ec-7691f6b64b08 other 2017 Glia 2022-05-26T08:52:19.377Z source-work-id 6a974f0a-cb8f-4191-a005-049510314685 6a974f0a-cb8f-4191-a005-049510314685 self eid 2-s2.0-85027678828 2-s2.0-85027678828 self doi 10.1007/978-3-319-63312-1_14 10.1007/978-3-319-63312-1_14 self 2017-11-30T00:13:49.712Z 2022-05-26T08:52:19.377Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Modeling neuron-astrocyte interactions: towards understanding synaptic plasticity and learning in the brain source-work-id 6a974f0a-cb8f-4191-a005-049510314685 6a974f0a-cb8f-4191-a005-049510314685 self eid 2-s2.0-85027678828 2-s2.0-85027678828 self doi 10.1007/978-3-319-63312-1_14 10.1007/978-3-319-63312-1_14 self isbn 978-3-319-63312-1 9783319633121 part-of isbn 978-3-319-63311-4 9783319633114 part-of https://researchportal.tuni.fi/en/publications/6a974f0a-cb8f-4191-a005-049510314685 conference-paper 2017 Intelligent Computing Theories and Application 2022-05-25T22:51:07.705Z eid 2-s2.0-85015371791 2-s2.0-85015371791 self source-work-id 32d5fcbc-20ef-410c-984e-ce81b0c4c5c8 32d5fcbc-20ef-410c-984e-ce81b0c4c5c8 self doi 10.3389/fninf.2017.00011 10.3389/fninf.2017.00011 self 2017-08-28T12:54:33.008Z 2022-05-25T22:51:07.705Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability source-work-id 32d5fcbc-20ef-410c-984e-ce81b0c4c5c8 32d5fcbc-20ef-410c-984e-ce81b0c4c5c8 self eid 2-s2.0-85015371791 2-s2.0-85015371791 self doi 10.3389/fninf.2017.00011 10.3389/fninf.2017.00011 self https://researchportal.tuni.fi/en/publications/32d5fcbc-20ef-410c-984e-ce81b0c4c5c8 journal-article 2017 Frontiers in Neuroinformatics 2022-05-26T10:06:48.771Z source-work-id 0cb20c15-92dd-4b34-b724-36f8fa0cecde 0cb20c15-92dd-4b34-b724-36f8fa0cecde self doi 10.7717/peerj-cs.142 10.7717/peerj-cs.142 self eid 2-s2.0-85040188790 2-s2.0-85040188790 self 2017-12-20T23:58:50.709Z 2022-05-26T10:06:48.771Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Sustainable computational science: the ReScience initiative source-work-id 0cb20c15-92dd-4b34-b724-36f8fa0cecde 0cb20c15-92dd-4b34-b724-36f8fa0cecde self eid 2-s2.0-85040188790 2-s2.0-85040188790 self doi 10.7717/peerj-cs.142 10.7717/peerj-cs.142 self https://researchportal.tuni.fi/en/publications/0cb20c15-92dd-4b34-b724-36f8fa0cecde journal-article 2017 PeerJ Computer Science 2022-06-02T08:43:51.709Z source-work-id 2f0c0a22-2895-49bb-a814-85e55d5cb4ab 2f0c0a22-2895-49bb-a814-85e55d5cb4ab self 2021-11-12T23:28:17.053Z 2022-06-02T08:43:51.709Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Astrocyte-neuron interactions in long-term plasticity: a computational study source-work-id 2f0c0a22-2895-49bb-a814-85e55d5cb4ab 2f0c0a22-2895-49bb-a814-85e55d5cb4ab self https://researchportal.tuni.fi/en/publications/2f0c0a22-2895-49bb-a814-85e55d5cb4ab conference-abstract 2016 The 46th Annual Meeting of the Society for Neuroscience, SFN 2016, San Diego, CA, USA, 12-16 November 2016, San Diego, United States, 12/11/16 2022-06-02T08:43:51.701Z source-work-id 33b2c0a1-30b5-4aaf-a444-3ed4ba0c5c29 33b2c0a1-30b5-4aaf-a444-3ed4ba0c5c29 self 2021-11-12T23:28:17.050Z 2022-06-02T08:43:51.701Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Astrocyte-neuron interactions in vitro and in vivo: Evaluation of computational models source-work-id 33b2c0a1-30b5-4aaf-a444-3ed4ba0c5c29 33b2c0a1-30b5-4aaf-a444-3ed4ba0c5c29 self https://researchportal.tuni.fi/en/publications/33b2c0a1-30b5-4aaf-a444-3ed4ba0c5c29 conference-abstract 2016 10th FENS Forum of Neuroscience, Copenhagen, Denmark, 2/07/16 2022-05-25T22:51:07.752Z source-work-id 70f8cd58-7f1f-4ac4-bdb3-d3bc88260910 70f8cd58-7f1f-4ac4-bdb3-d3bc88260910 self 2017-08-28T12:54:33.010Z 2022-05-25T22:51:07.752Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Extending computational models of astrocyte-neuron interactions with biochemical mechanisms on the postsynaptic terminal source-work-id 70f8cd58-7f1f-4ac4-bdb3-d3bc88260910 70f8cd58-7f1f-4ac4-bdb3-d3bc88260910 self https://researchportal.tuni.fi/en/publications/70f8cd58-7f1f-4ac4-bdb3-d3bc88260910 other 2015 BMC Neuroscience 2022-05-25T22:51:07.741Z source-work-id 0216cbb3-5483-4ee1-bc94-811fbbeeeb7d 0216cbb3-5483-4ee1-bc94-811fbbeeeb7d self 2017-08-28T12:54:33.010Z 2022-05-25T22:51:07.741Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University How temporal variation affects downstream neurons through deep cerebellar nuclei model source-work-id 0216cbb3-5483-4ee1-bc94-811fbbeeeb7d 0216cbb3-5483-4ee1-bc94-811fbbeeeb7d self https://researchportal.tuni.fi/en/publications/0216cbb3-5483-4ee1-bc94-811fbbeeeb7d conference-paper 2015 Annual Biomedical Research Conference for Minority Student, ABRCMS 2015, Seattle, WA, USA, 11-14 November, 2015 2022-05-25T22:51:07.736Z source-work-id 3319ec06-7170-46ae-9578-ee9b173b7a34 3319ec06-7170-46ae-9578-ee9b173b7a34 self 2017-08-28T12:54:33.009Z 2022-05-25T22:51:07.736Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Modeling cortical neuroplasticity and synaptic functions: Implications for future neuroscience, medicine, and computing source-work-id 3319ec06-7170-46ae-9578-ee9b173b7a34 3319ec06-7170-46ae-9578-ee9b173b7a34 self https://researchportal.tuni.fi/en/publications/3319ec06-7170-46ae-9578-ee9b173b7a34 conference-paper 2015 BioMediTech Research Day, Tampere, Finland, 4 Dec 2015 2022-05-25T22:51:07.730Z source-work-id cf74b814-b098-4fbd-80cf-efea52849585 cf74b814-b098-4fbd-80cf-efea52849585 self doi 10.1186/1471-2202-16-S1-P147 10.1186/1471-2202-16-s1-p147 self 2017-08-28T12:54:33.009Z 2022-05-25T22:51:07.730Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Numerical characterization of noisy fluctuations in two different types of stochastic differential equation models of neural signaling source-work-id cf74b814-b098-4fbd-80cf-efea52849585 cf74b814-b098-4fbd-80cf-efea52849585 self doi 10.1186/1471-2202-16-S1-P147 10.1186/1471-2202-16-s1-p147 self https://researchportal.tuni.fi/en/publications/cf74b814-b098-4fbd-80cf-efea52849585 other 2015 BMC Neuroscience 2022-05-25T22:51:07.723Z source-work-id d85c2e1c-a68e-41c2-bee9-85a1fe43d918 d85c2e1c-a68e-41c2-bee9-85a1fe43d918 self doi 10.1186/1471-2202-16-S1-P202 10.1186/1471-2202-16-s1-p202 self 2017-08-28T12:54:33.009Z 2022-05-25T22:51:07.723Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Regular and irregular stimuli result in changes in mice eye movement and cerebellar nuclei neuron model behavior source-work-id d85c2e1c-a68e-41c2-bee9-85a1fe43d918 d85c2e1c-a68e-41c2-bee9-85a1fe43d918 self doi 10.1186/1471-2202-16-S1-P202 10.1186/1471-2202-16-s1-p202 self https://researchportal.tuni.fi/en/publications/d85c2e1c-a68e-41c2-bee9-85a1fe43d918 other 2015 BMC Neuroscience 2022-05-25T22:51:07.758Z source-work-id 0aff2728-3b22-4069-bacd-c28b54b19781 0aff2728-3b22-4069-bacd-c28b54b19781 self 2017-08-28T12:54:33.010Z 2022-05-25T22:51:07.758Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Contribution of amyloid beta to intracellular calcium signals in astrocytes: a computational study source-work-id 0aff2728-3b22-4069-bacd-c28b54b19781 0aff2728-3b22-4069-bacd-c28b54b19781 self https://researchportal.tuni.fi/en/publications/0aff2728-3b22-4069-bacd-c28b54b19781 conference-paper 2012 The 42nd Annual Meeting of the Society for Neuroscience, SFN 2012, New Orleans, LA, USA, 13-17 October 2012 2022-05-25T22:51:07.790Z source-work-id 7177dc31-7fb6-4db6-970f-d93cf01ed582 7177dc31-7fb6-4db6-970f-d93cf01ed582 self pmid 21693049 21693049 self doi 10.1186/1471-2105-12-252 10.1186/1471-2105-12-252 self wosuid 000293000900001 000293000900001 self eid 2-s2.0-79959247643 2-s2.0-79959247643 self pmc PMC3142227 3142227 self 2016-09-21T17:41:34.823Z 2022-05-25T04:26:20.957Z https://orcid.org/client/0000-0002-9157-3431 0000-0002-9157-3431 orcid.org Europe PubMed Central https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Computational study of noise in a large signal transduction network. pmid 21693049 21693049 self pmc PMC3142227 3142227 self doi 10.1186/1471-2105-12-252 10.1186/1471-2105-12-252 self http://europepmc.org/abstract/med/21693049 journal-article 2011 2016-09-21T17:59:59.984Z 2022-05-25T04:26:23.093Z https://orcid.org/client/0000-0002-5982-8983 0000-0002-5982-8983 orcid.org Scopus - Elsevier https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Computational study of noise in a large signal transduction network doi 10.1186/1471-2105-12-252 10.1186/1471-2105-12-252 self eid 2-s2.0-79959247643 2-s2.0-79959247643 self http://www.scopus.com/inward/record.url?eid=2-s2.0-79959247643&partnerID=MN8TOARS journal-article 2011 BMC Bioinformatics 2017-08-28T12:54:33.012Z 2022-05-25T22:51:07.790Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational study of noise in a large signal transduction network source-work-id 7177dc31-7fb6-4db6-970f-d93cf01ed582 7177dc31-7fb6-4db6-970f-d93cf01ed582 self wosuid 000293000900001 000293000900001 self eid 2-s2.0-79959247643 2-s2.0-79959247643 self doi 10.1186/1471-2105-12-252 10.1186/1471-2105-12-252 self https://researchportal.tuni.fi/en/publications/7177dc31-7fb6-4db6-970f-d93cf01ed582 journal-article 2011 BMC Bioinformatics 2022-05-25T22:51:07.783Z doi 10.1186/1471-2202-12-S1-P201 10.1186/1471-2202-12-s1-p201 self source-work-id 5fde6fbe-e1f1-4794-88d3-f3935bba346b 5fde6fbe-e1f1-4794-88d3-f3935bba346b self 2017-08-28T12:54:33.012Z 2022-05-25T22:51:07.783Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Contribution Of SERCA And IP3 Sensitivity to Calcium Signaling in Astrocytes: A Computational Study source-work-id 5fde6fbe-e1f1-4794-88d3-f3935bba346b 5fde6fbe-e1f1-4794-88d3-f3935bba346b self doi 10.1186/1471-2202-12-S1-P201 10.1186/1471-2202-12-s1-p201 self https://researchportal.tuni.fi/en/publications/5fde6fbe-e1f1-4794-88d3-f3935bba346b other 2011 BMC Neuroscience 2022-05-25T22:51:07.777Z source-work-id 289a5eae-86c1-4317-83e2-24cc045277f9 289a5eae-86c1-4317-83e2-24cc045277f9 self doi 10.1371/journal.pone.0017914 10.1371/journal.pone.0017914 self wosuid 000289054600020 000289054600020 self eid 2-s2.0-79953199022 2-s2.0-79953199022 self pmc PMC3066169 3066169 self pmid 21483471 21483471 self 2016-09-21T17:41:34.837Z 2022-05-25T04:26:20.969Z https://orcid.org/client/0000-0002-9157-3431 0000-0002-9157-3431 orcid.org Europe PubMed Central https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Effects of transmitters and amyloid-beta peptide on calcium signals in rat cortical astrocytes: Fura-2AM measurements and stochastic model simulations. pmid 21483471 21483471 self pmc PMC3066169 3066169 self doi 10.1371/journal.pone.0017914 10.1371/journal.pone.0017914 self http://europepmc.org/abstract/med/21483471 journal-article 2011 2016-09-21T17:59:59.951Z 2022-05-25T04:26:23.076Z https://orcid.org/client/0000-0002-5982-8983 0000-0002-5982-8983 orcid.org Scopus - Elsevier https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Effects of transmitters and amyloid-beta peptide on calcium signals in rat cortical astrocytes: Fura-2AM measurements and stochastic model simulations doi 10.1371/journal.pone.0017914 10.1371/journal.pone.0017914 self eid 2-s2.0-79953199022 2-s2.0-79953199022 self http://www.scopus.com/inward/record.url?eid=2-s2.0-79953199022&partnerID=MN8TOARS journal-article 2011 PLoS ONE 2017-08-28T12:54:33.011Z 2022-05-25T22:51:07.777Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Effects of Transmitters and Amyloid-Beta Peptide on Calcium Signals in Rat Cortical Astrocytes: Fura-2AM Measurements and Stochastic Model Simulations source-work-id 289a5eae-86c1-4317-83e2-24cc045277f9 289a5eae-86c1-4317-83e2-24cc045277f9 self wosuid 000289054600020 000289054600020 self eid 2-s2.0-79953199022 2-s2.0-79953199022 self doi 10.1371/journal.pone.0017914 10.1371/journal.pone.0017914 self https://researchportal.tuni.fi/en/publications/289a5eae-86c1-4317-83e2-24cc045277f9 journal-article 2011 PLoS ONE 2022-05-25T22:51:07.770Z doi 10.1155/2011/797250 10.1155/2011/797250 self pmc PMC3171304 3171304 self pmid 21559300 21559300 self source-work-id 473ed2f3-c41e-49df-9bc1-4ca4417b2fdf 473ed2f3-c41e-49df-9bc1-4ca4417b2fdf self eid 2-s2.0-79959244197 2-s2.0-79959244197 self 2016-09-21T17:41:34.830Z 2022-05-25T04:26:20.963Z https://orcid.org/client/0000-0002-9157-3431 0000-0002-9157-3431 orcid.org Europe PubMed Central https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Modeling signal transduction leading to synaptic plasticity: evaluation and comparison of five models. pmid 21559300 21559300 self pmc PMC3171304 3171304 self doi 10.1155/2011/797250 10.1155/2011/797250 self http://europepmc.org/abstract/med/21559300 journal-article 2011 2016-09-21T17:59:59.967Z 2022-05-25T04:26:23.081Z https://orcid.org/client/0000-0002-5982-8983 0000-0002-5982-8983 orcid.org Scopus - Elsevier https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Modeling signal transduction leading to synaptic plasticity: Evaluation and comparison of five models doi 10.1155/2011/797250 10.1155/2011/797250 self eid 2-s2.0-79959244197 2-s2.0-79959244197 self http://www.scopus.com/inward/record.url?eid=2-s2.0-79959244197&partnerID=MN8TOARS journal-article 2011 Eurasip Journal on Bioinformatics and Systems Biology 2017-08-28T12:54:33.011Z 2022-05-25T22:51:07.770Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Modeling Signal Transduction Leading to Synaptic Plasticity: Evaluation and Comparison of Five Models source-work-id 473ed2f3-c41e-49df-9bc1-4ca4417b2fdf 473ed2f3-c41e-49df-9bc1-4ca4417b2fdf self eid 2-s2.0-79959244197 2-s2.0-79959244197 self doi 10.1155/2011/797250 10.1155/2011/797250 self https://researchportal.tuni.fi/en/publications/473ed2f3-c41e-49df-9bc1-4ca4417b2fdf journal-article 2011 Eurasip Journal on Bioinformatics and Systems Biology 2022-05-25T22:51:07.764Z source-work-id 0b24f981-76d6-426b-9f98-87519e44d59d 0b24f981-76d6-426b-9f98-87519e44d59d self 2017-08-28T12:54:33.011Z 2022-05-25T22:51:07.764Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Studying the quality of noise in a large biochemical reaction network as a function of the system volume source-work-id 0b24f981-76d6-426b-9f98-87519e44d59d 0b24f981-76d6-426b-9f98-87519e44d59d self https://researchportal.tuni.fi/en/publications/0b24f981-76d6-426b-9f98-87519e44d59d conference-paper 2011 The International Conference on Applied Mathematics, Modeling and Computational Science, AMMCS 2011, 25 - 29 July, Waterloo, Ontario, Canada 2022-05-25T22:51:07.846Z doi 10.3389/conf.fnins.2010.13.00061 10.3389/conf.fnins.2010.13.00061 self source-work-id 54df0b2a-9c00-4bd4-8106-9316b22947e8 54df0b2a-9c00-4bd4-8106-9316b22947e8 self 2017-08-28T12:54:33.014Z 2022-05-25T22:51:07.846Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Calcium signaling in astrocytes: modeling Fura-2AM measurements source-work-id 54df0b2a-9c00-4bd4-8106-9316b22947e8 54df0b2a-9c00-4bd4-8106-9316b22947e8 self doi 10.3389/conf.fnins.2010.13.00061 10.3389/conf.fnins.2010.13.00061 self https://researchportal.tuni.fi/en/publications/54df0b2a-9c00-4bd4-8106-9316b22947e8 other 2010 Frontiers in Neuroscience 2022-05-25T22:51:07.839Z source-work-id 5a0c7c83-1a0b-4700-9898-93f37ad53bda 5a0c7c83-1a0b-4700-9898-93f37ad53bda self 2017-08-28T12:54:33.014Z 2022-05-25T22:51:07.839Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Comparing two stochastic differential equation models for protein kinase C activation pathway source-work-id 5a0c7c83-1a0b-4700-9898-93f37ad53bda 5a0c7c83-1a0b-4700-9898-93f37ad53bda self https://researchportal.tuni.fi/en/publications/5a0c7c83-1a0b-4700-9898-93f37ad53bda conference-paper 2010 Abstracts of Papers, Posters and Talks presented at the 2010 Joint RECOMB Satellite Conference on Systems Biology - Regulatory Genomics - DREAM5, New York, USA, 16-20 November 2010 2022-05-25T22:51:07.833Z doi 10.1145/1854776.1854838 10.1145/1854776.1854838 self source-work-id 11469981-5081-4337-9f58-416c93658b54 11469981-5081-4337-9f58-416c93658b54 self eid 2-s2.0-77958042740 2-s2.0-77958042740 self 2016-09-21T18:00:00.521Z 2022-05-25T04:26:23.127Z https://orcid.org/client/0000-0002-5982-8983 0000-0002-5982-8983 orcid.org Scopus - Elsevier https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Comparison of discrete- and continuous-state stochastic methods to model neuronal signal transduction doi 10.1145/1854776.1854838 10.1145/1854776.1854838 self eid 2-s2.0-77958042740 2-s2.0-77958042740 self http://www.scopus.com/inward/record.url?eid=2-s2.0-77958042740&partnerID=MN8TOARS conference-paper 2010 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010 2017-08-28T12:54:33.014Z 2022-05-25T22:51:07.833Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Comparison of discrete- and continuous-state stochastic methods to model neuronal signal transduction source-work-id 11469981-5081-4337-9f58-416c93658b54 11469981-5081-4337-9f58-416c93658b54 self eid 2-s2.0-77958042740 2-s2.0-77958042740 self doi 10.1145/1854776.1854838 10.1145/1854776.1854838 self isbn 978-1-4603-0192-3 9781460301923 part-of https://researchportal.tuni.fi/en/publications/11469981-5081-4337-9f58-416c93658b54 conference-paper 2010 Proceedings of ACM International Conference on Bioinformatics and Computational Biology BCB10, Niagara Falls, New York, USA, August 2-4, 2010 2022-05-25T22:51:07.819Z source-work-id 827ba6ea-0c57-487f-8a87-4923fcb57359 827ba6ea-0c57-487f-8a87-4923fcb57359 self 2017-08-28T12:54:33.013Z 2022-05-25T22:51:07.819Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational models for synaptic plasticity source-work-id 827ba6ea-0c57-487f-8a87-4923fcb57359 827ba6ea-0c57-487f-8a87-4923fcb57359 self https://researchportal.tuni.fi/en/publications/827ba6ea-0c57-487f-8a87-4923fcb57359 conference-paper 2010 3rd INCF National Node of Finland Workshop on Neuroinformatics, Tampere, Finland, 21 September 2010 2022-05-25T22:51:07.812Z source-work-id 1757d3d6-dc97-4f4f-bc1b-17d683c04655 1757d3d6-dc97-4f4f-bc1b-17d683c04655 self doi 10.1186/1471-2202-11-S1-P190 10.1186/1471-2202-11-s1-p190 self 2017-08-28T12:54:33.013Z 2022-05-25T22:51:07.812Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Modeling signal transduction in synaptic plasticity: comparison of models and methods source-work-id 1757d3d6-dc97-4f4f-bc1b-17d683c04655 1757d3d6-dc97-4f4f-bc1b-17d683c04655 self doi 10.1186/1471-2202-11-S1-P190 10.1186/1471-2202-11-s1-p190 self https://researchportal.tuni.fi/en/publications/1757d3d6-dc97-4f4f-bc1b-17d683c04655 other 2010 BMC Neuroscience 2022-05-25T22:51:07.805Z source-work-id 037195f0-048a-454f-8e05-cf0773b36159 037195f0-048a-454f-8e05-cf0773b36159 self 2017-08-28T12:54:33.013Z 2022-05-25T22:51:07.805Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Neurotransmitter and amyloid-β peptide induced calcium signaling in astrocytes source-work-id 037195f0-048a-454f-8e05-cf0773b36159 037195f0-048a-454f-8e05-cf0773b36159 self https://researchportal.tuni.fi/en/publications/037195f0-048a-454f-8e05-cf0773b36159 conference-paper 2010 Joint Meeting on New Horizons in Calcium Signaling, Beijing, China, 10-13 October 2010 2022-05-25T22:51:07.797Z eid 2-s2.0-79959268899 2-s2.0-79959268899 self wosuid 000288500300003 000288500300003 self pmid 21188161 21188161 self source-work-id 25785ff8-e2f0-412d-9f29-217888aaecff 25785ff8-e2f0-412d-9f29-217888aaecff self pmc PMC3006457 3006457 self doi 10.3389/fncom.2010.00152 10.3389/fncom.2010.00152 self 2016-09-21T17:41:34.842Z 2022-05-25T04:26:20.975Z https://orcid.org/client/0000-0002-9157-3431 0000-0002-9157-3431 orcid.org Europe PubMed Central https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Postsynaptic signal transduction models for long-term potentiation and depression. pmid 21188161 21188161 self pmc PMC3006457 3006457 self doi 10.3389/fncom.2010.00152 10.3389/fncom.2010.00152 self http://europepmc.org/abstract/med/21188161 journal-article 2010 2016-09-21T17:59:59.974Z 2022-05-25T04:26:23.087Z https://orcid.org/client/0000-0002-5982-8983 0000-0002-5982-8983 orcid.org Scopus - Elsevier https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Postsynaptic signal transduction models for long-term potentiation and depression doi 10.3389/fncom.2010.00152 10.3389/fncom.2010.00152 self eid 2-s2.0-79959268899 2-s2.0-79959268899 self http://www.scopus.com/inward/record.url?eid=2-s2.0-79959268899&partnerID=MN8TOARS journal-article 2010 Frontiers in Computational Neuroscience 2017-08-28T12:54:33.012Z 2022-05-25T22:51:07.797Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Postsynaptic signal transduction models for long-term potentiation and depression source-work-id 25785ff8-e2f0-412d-9f29-217888aaecff 25785ff8-e2f0-412d-9f29-217888aaecff self wosuid 000288500300003 000288500300003 self eid 2-s2.0-79959268899 2-s2.0-79959268899 self doi 10.3389/fncom.2010.00152 10.3389/fncom.2010.00152 self https://researchportal.tuni.fi/en/publications/25785ff8-e2f0-412d-9f29-217888aaecff journal-article 2010 Frontiers in Computational Neuroscience 2022-05-25T22:51:07.869Z source-work-id e06e9ac4-898a-43ad-8521-3d00e22c395c e06e9ac4-898a-43ad-8521-3d00e22c395c self 2017-08-28T12:54:33.015Z 2022-05-25T22:51:07.869Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Modeling biochemical systems: analysis in time and frequency domain source-work-id e06e9ac4-898a-43ad-8521-3d00e22c395c e06e9ac4-898a-43ad-8521-3d00e22c395c self https://researchportal.tuni.fi/en/publications/e06e9ac4-898a-43ad-8521-3d00e22c395c conference-paper 2009 Proceedings of FOSBE 2009, Foundations of Systems Biology in Engineering, Englewood, Colorado, USA, 9-12 August 2009 2022-05-25T22:51:07.858Z source-work-id 88c6d7e2-e240-4f25-ae0c-2b259be70332 88c6d7e2-e240-4f25-ae0c-2b259be70332 self 2017-08-28T12:54:33.015Z 2022-05-25T22:51:07.858Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Modeling protein kinase C activation in the presence of calcium ion fluctuations source-work-id 88c6d7e2-e240-4f25-ae0c-2b259be70332 88c6d7e2-e240-4f25-ae0c-2b259be70332 self isbn 978-952-15-2160-7 9789521521607 part-of https://researchportal.tuni.fi/en/publications/88c6d7e2-e240-4f25-ae0c-2b259be70332 conference-paper 2009 Proceedings of the Sixth International Workshop on Computational Systems Biology, WCSB 2009, Aarhus, Denmark 10-12 June 2009 2022-05-25T22:51:07.852Z source-work-id b49e3b55-9e0f-4417-96e8-fd2d9dd60480 b49e3b55-9e0f-4417-96e8-fd2d9dd60480 self isbn 978-952-15-2160-7 9789521521607 self 2017-08-28T12:54:33.014Z 2022-05-25T22:51:07.852Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Proceedings of the 6th International Workshop on Computational Systems Biology, WCSB 2009, Aarhus, Denmark, 10-12 June 2009 source-work-id b49e3b55-9e0f-4417-96e8-fd2d9dd60480 b49e3b55-9e0f-4417-96e8-fd2d9dd60480 self isbn 978-952-15-2160-7 9789521521607 self https://researchportal.tuni.fi/en/publications/b49e3b55-9e0f-4417-96e8-fd2d9dd60480 edited-book 2009 Tampere University of Technology, Tampere International Center for Signal Processing, TICSP Series 2023-06-22T00:07:58.547Z doi 10.3389/conf.neuro.11.2008.01.049 10.3389/conf.neuro.11.2008.01.049 self source-work-id 324ea0d7-ef0b-4b33-852e-141b5facbbaf 324ea0d7-ef0b-4b33-852e-141b5facbbaf self 2017-08-28T12:54:33.018Z 2023-06-22T00:07:58.547Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Computational model for astroglial cell function in Alzheimer's disease source-work-id 324ea0d7-ef0b-4b33-852e-141b5facbbaf 324ea0d7-ef0b-4b33-852e-141b5facbbaf self doi 10.3389/conf.neuro.11.2008.01.049 10.3389/conf.neuro.11.2008.01.049 self https://researchportal.tuni.fi/en/publications/324ea0d7-ef0b-4b33-852e-141b5facbbaf other 2008 Frontiers in Neuroinformatics 2023-06-22T00:07:59.444Z doi 10.3389/conf.neuro.11.2008.01.033 10.3389/conf.neuro.11.2008.01.033 self source-work-id 68e67e7d-1df6-4644-bfb3-97d8256aff02 68e67e7d-1df6-4644-bfb3-97d8256aff02 self 2017-08-28T12:54:33.018Z 2023-06-22T00:07:59.444Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Evaluation of deterministic and stochastic simulation tools for cellular signaling source-work-id 68e67e7d-1df6-4644-bfb3-97d8256aff02 68e67e7d-1df6-4644-bfb3-97d8256aff02 self doi 10.3389/conf.neuro.11.2008.01.033 10.3389/conf.neuro.11.2008.01.033 self https://researchportal.tuni.fi/en/publications/68e67e7d-1df6-4644-bfb3-97d8256aff02 other 2008 Frontiers in Neuroinformatics 2022-05-25T22:51:07.915Z source-work-id fe9b7cdb-6bf1-4bc3-94fa-f131dd371ec6 fe9b7cdb-6bf1-4bc3-94fa-f131dd371ec6 self 2017-08-28T12:54:33.017Z 2022-05-25T22:51:07.915Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Kemiallisten reaktioiden mallintaminen ja tietokonesimulaatiot source-work-id fe9b7cdb-6bf1-4bc3-94fa-f131dd371ec6 fe9b7cdb-6bf1-4bc3-94fa-f131dd371ec6 self https://researchportal.tuni.fi/en/publications/fe9b7cdb-6bf1-4bc3-94fa-f131dd371ec6 journal-article 2008 Solubiologi 2022-05-25T22:51:07.902Z source-work-id 58a2acb5-8b9e-4b6e-a4f4-5104e25b7790 58a2acb5-8b9e-4b6e-a4f4-5104e25b7790 self 2017-08-28T12:54:33.017Z 2022-05-25T22:51:07.902Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Modeling IP3 receptor function using stochastic approaches source-work-id 58a2acb5-8b9e-4b6e-a4f4-5104e25b7790 58a2acb5-8b9e-4b6e-a4f4-5104e25b7790 self isbn 978-952-15-1988-8 9789521519888 part-of https://researchportal.tuni.fi/en/publications/58a2acb5-8b9e-4b6e-a4f4-5104e25b7790 conference-paper 2008 Proceedings of the Fifth International Workshop on Computational Systems Biology, WCSB 2008, Leipzig, Germany, 11-13 June 2008 2022-05-25T22:51:07.908Z source-work-id c2c6e3fb-5100-4171-a887-8f7492c11936 c2c6e3fb-5100-4171-a887-8f7492c11936 self 2017-08-28T12:54:33.017Z 2022-05-25T22:51:07.908Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Modeling amyloid-β and serotonin induced calcium oscillations in astrocytes source-work-id c2c6e3fb-5100-4171-a887-8f7492c11936 c2c6e3fb-5100-4171-a887-8f7492c11936 self https://researchportal.tuni.fi/en/publications/c2c6e3fb-5100-4171-a887-8f7492c11936 conference-paper 2008 Abstracts of Neuroscience 2008, Washington D. 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Elsevier https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Estimation of neuronal signaling model parameters using deterministic and stochastic in silico training data: Evaluation of four parameter estimation methods doi 10.1109/GENSIPS.2007.4365824 10.1109/gensips.2007.4365824 self eid 2-s2.0-47049105095 2-s2.0-47049105095 self http://www.scopus.com/inward/record.url?eid=2-s2.0-47049105095&partnerID=MN8TOARS conference-paper 2007 GENSIPS'07 - 5th IEEE International Workshop on Genomic Signal Processing and Statistics 2017-08-28T12:54:33.019Z 2022-05-25T22:51:07.952Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Estimation of neuronal signaling model parameters using deterministic and stochastic in silico training data: evaluation of four parameter estimation methods source-work-id 5aed0483-22cf-4b36-ad12-d3ae82595e9a 5aed0483-22cf-4b36-ad12-d3ae82595e9a self eid 2-s2.0-47049105095 2-s2.0-47049105095 self doi 10.1109/GENSIPS.2007.4365824 10.1109/gensips.2007.4365824 self isbn 1-4244-0999-3 1424409993 part-of https://researchportal.tuni.fi/en/publications/5aed0483-22cf-4b36-ad12-d3ae82595e9a conference-paper 2007 Proceedings of the Fifth IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'07, Tuusula, Finland, 10-12 June 2007 2022-05-25T22:51:07.946Z doi 10.1109/GENSIPS.2007.4365829 10.1109/gensips.2007.4365829 self eid 2-s2.0-47149109445 2-s2.0-47149109445 self source-work-id 7033b426-61c6-49e4-8eb8-b783e5e729a2 7033b426-61c6-49e4-8eb8-b783e5e729a2 self 2017-08-28T12:54:33.019Z 2022-05-25T22:51:07.946Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Parameter estimation and tuning of firefly luciferase pathway model source-work-id 7033b426-61c6-49e4-8eb8-b783e5e729a2 7033b426-61c6-49e4-8eb8-b783e5e729a2 self eid 2-s2.0-47149109445 2-s2.0-47149109445 self doi 10.1109/GENSIPS.2007.4365829 10.1109/gensips.2007.4365829 self isbn 1-4244-0999-3 1424409993 part-of https://researchportal.tuni.fi/en/publications/7033b426-61c6-49e4-8eb8-b783e5e729a2 conference-paper 2007 Proceedings of the Fifth IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'07, Tuusula, Finland, 10-12 June 2007 2022-05-25T22:51:07.940Z source-work-id 457bf799-29c4-4749-b7f8-2356bdf68716 457bf799-29c4-4749-b7f8-2356bdf68716 self 2017-08-28T12:54:33.019Z 2022-05-25T22:51:07.940Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Sequential Monte Carlo based maximum likelihood estimation for calcium binding reactions source-work-id 457bf799-29c4-4749-b7f8-2356bdf68716 457bf799-29c4-4749-b7f8-2356bdf68716 self isbn 978-3-8167-7436-5 9783816774365 part-of https://researchportal.tuni.fi/en/publications/457bf799-29c4-4749-b7f8-2356bdf68716 conference-paper 2007 Proceedings of the 2nd Conference on Foundations of Systems Biology in Engineering, FOSBE 2007, Stuttgart, Germany, 9-12 September 2007 2022-05-25T22:51:07.933Z isbn 978-952-15-1896-6 9789521518966 self source-work-id 3f9fdf0c-7f7d-4717-a196-55565103963a 3f9fdf0c-7f7d-4717-a196-55565103963a self 2017-08-28T12:54:33.018Z 2022-05-25T22:51:07.933Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Stochastic methods for modeling intracellular signaling source-work-id 3f9fdf0c-7f7d-4717-a196-55565103963a 3f9fdf0c-7f7d-4717-a196-55565103963a self isbn 978-952-15-1896-6 9789521518966 self https://researchportal.tuni.fi/en/publications/3f9fdf0c-7f7d-4717-a196-55565103963a dissertation-thesis 2007 Tampereen teknillinen yliopisto. Julkaisu 2022-05-27T18:17:13.848Z source-work-id 39227083-a66e-4cd3-a865-795792ffdd3b 39227083-a66e-4cd3-a865-795792ffdd3b self 2019-01-11T23:52:06.183Z 2022-05-27T18:17:13.848Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Stochastic simulation tools for cellular signaling: survey, evaluation and quantitative analysis source-work-id 39227083-a66e-4cd3-a865-795792ffdd3b 39227083-a66e-4cd3-a865-795792ffdd3b self isbn 978-3-8167-7436-5 9783816774365 part-of https://researchportal.tuni.fi/en/publications/39227083-a66e-4cd3-a865-795792ffdd3b conference-paper 2007 Proceedings of the 2nd Conference on Foundations of Systems Biology in Engineering, FOSBE 2007, Stuttgart, Germany, 9-12 September 2007 2023-06-22T00:07:56.680Z doi 10.1016/j.compbiolchem.2006.04.002 10.1016/j.compbiolchem.2006.04.002 self pmid 16880117 16880117 self source-work-id fe9c9f72-2eec-4d11-9277-c45bf2debb9c fe9c9f72-2eec-4d11-9277-c45bf2debb9c self eid 2-s2.0-33746373126 2-s2.0-33746373126 self wosuid 000239876500005 000239876500005 self 2016-09-21T17:41:34.857Z 2022-05-25T04:26:20.981Z https://orcid.org/client/0000-0002-9157-3431 0000-0002-9157-3431 orcid.org Europe PubMed Central https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Developing Ito stochastic differential equation models for neuronal signal transduction pathways. pmid 16880117 16880117 self doi 10.1016/j.compbiolchem.2006.04.002 10.1016/j.compbiolchem.2006.04.002 self http://europepmc.org/abstract/med/16880117 journal-article 2006 08 2016-09-21T17:59:59.990Z 2022-05-25T04:26:23.098Z https://orcid.org/client/0000-0002-5982-8983 0000-0002-5982-8983 orcid.org Scopus - Elsevier https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Developing Itô stochastic differential equation models for neuronal signal transduction pathways doi 10.1016/j.compbiolchem.2006.04.002 10.1016/j.compbiolchem.2006.04.002 self eid 2-s2.0-33746373126 2-s2.0-33746373126 self http://www.scopus.com/inward/record.url?eid=2-s2.0-33746373126&partnerID=MN8TOARS journal-article 2006 Computational Biology and Chemistry 2017-08-28T12:54:33.021Z 2023-06-22T00:07:56.680Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Developing Ito stochastic differential equation models for neuronal signal transduction pathways source-work-id fe9c9f72-2eec-4d11-9277-c45bf2debb9c fe9c9f72-2eec-4d11-9277-c45bf2debb9c self wosuid 000239876500005 000239876500005 self eid 2-s2.0-33746373126 2-s2.0-33746373126 self doi 10.1016/j.compbiolchem.2006.04.002 10.1016/j.compbiolchem.2006.04.002 self https://researchportal.tuni.fi/en/publications/fe9c9f72-2eec-4d11-9277-c45bf2debb9c journal-article 2006 Computational Biology and Chemistry 2022-05-25T22:51:07.988Z source-work-id b0f55489-2d6b-49fa-802a-32210e0e40b3 b0f55489-2d6b-49fa-802a-32210e0e40b3 self doi 10.1016/j.neucom.2005.12.047 10.1016/j.neucom.2005.12.047 self eid 2-s2.0-33646104196 2-s2.0-33646104196 self wosuid 000237873900016 000237873900016 self 2016-09-21T18:00:00.508Z 2022-05-25T04:26:23.115Z https://orcid.org/client/0000-0002-5982-8983 0000-0002-5982-8983 orcid.org Scopus - Elsevier https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen A novel approach to model neuronal signal transduction using stochastic differential equations doi 10.1016/j.neucom.2005.12.047 10.1016/j.neucom.2005.12.047 self eid 2-s2.0-33646104196 2-s2.0-33646104196 self http://www.scopus.com/inward/record.url?eid=2-s2.0-33646104196&partnerID=MN8TOARS journal-article 2006 Neurocomputing 2017-08-28T12:54:33.021Z 2022-05-25T22:51:07.988Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University A novel approach to model neuronal signal transduction using stochastic differential equations source-work-id b0f55489-2d6b-49fa-802a-32210e0e40b3 b0f55489-2d6b-49fa-802a-32210e0e40b3 self wosuid 000237873900016 000237873900016 self eid 2-s2.0-33646104196 2-s2.0-33646104196 self doi 10.1016/j.neucom.2005.12.047 10.1016/j.neucom.2005.12.047 self https://researchportal.tuni.fi/en/publications/b0f55489-2d6b-49fa-802a-32210e0e40b3 journal-article 2006 Neurocomputing 2022-05-25T22:51:07.976Z source-work-id ebfcfc56-4b0c-46ae-9f83-f751c6587fec ebfcfc56-4b0c-46ae-9f83-f751c6587fec self doi 10.1109/iembs.2006.260023 10.1109/iembs.2006.260023 self pmid 17945691 17945691 self eid 2-s2.0-34047152367 2-s2.0-34047152367 self 2016-09-21T17:41:34.862Z 2022-05-25T04:26:20.987Z https://orcid.org/client/0000-0002-9157-3431 0000-0002-9157-3431 orcid.org Europe PubMed Central https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Discrete stochastic simulation of cell signaling: comparison of computational tools. pmid 17945691 17945691 self doi 10.1109/iembs.2006.260023 10.1109/iembs.2006.260023 self http://europepmc.org/abstract/med/17945691 journal-article 2006 2016-09-21T18:00:00.503Z 2022-05-25T04:26:23.110Z https://orcid.org/client/0000-0002-5982-8983 0000-0002-5982-8983 orcid.org Scopus - Elsevier https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Discrete stochastic simulation of cell signaling: Comparison of computational tools doi 10.1109/IEMBS.2006.260023 10.1109/iembs.2006.260023 self eid 2-s2.0-34047152367 2-s2.0-34047152367 self http://www.scopus.com/inward/record.url?eid=2-s2.0-34047152367&partnerID=MN8TOARS conference-paper 2006 Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings 2017-08-28T12:54:33.020Z 2022-05-25T22:51:07.976Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Discrete stochastic simulation of cell signaling: comparison of computational tools source-work-id ebfcfc56-4b0c-46ae-9f83-f751c6587fec ebfcfc56-4b0c-46ae-9f83-f751c6587fec self eid 2-s2.0-34047152367 2-s2.0-34047152367 self doi 10.1109/IEMBS.2006.260023 10.1109/iembs.2006.260023 self https://researchportal.tuni.fi/en/publications/ebfcfc56-4b0c-46ae-9f83-f751c6587fec conference-paper 2006 Proceedings of the 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC, New York City, USA, August 30 - September 3, 2006 2022-05-25T22:51:07.970Z source-work-id a5255c0c-509d-4d95-ad9f-d9b6174335e1 a5255c0c-509d-4d95-ad9f-d9b6174335e1 self 2017-08-28T12:54:33.020Z 2022-05-25T22:51:07.970Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Modeling neuronal signal transduction using Itô stochastic differential equations and the Gillespie stochastic simulation algorithm source-work-id a5255c0c-509d-4d95-ad9f-d9b6174335e1 a5255c0c-509d-4d95-ad9f-d9b6174335e1 self https://researchportal.tuni.fi/en/publications/a5255c0c-509d-4d95-ad9f-d9b6174335e1 conference-paper 2006 Proceedings of the IASTED International Conference on Computational and Systems Biology, Dallas, Texas, USA, 13-14 November 2006 2022-05-25T22:51:07.965Z source-work-id 459fc421-8904-41fb-bdba-6feab0050a41 459fc421-8904-41fb-bdba-6feab0050a41 self isbn 952-15-1604-6 9521516046 self 2017-08-28T12:54:33.020Z 2022-05-25T22:51:07.965Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Proceedings of the 4th TICSP Workshop on Computational Systems Biology, WCSB 2006, Tampere, Finland, 12-13 June 2006 source-work-id 459fc421-8904-41fb-bdba-6feab0050a41 459fc421-8904-41fb-bdba-6feab0050a41 self isbn 952-15-1604-6 9521516046 self https://researchportal.tuni.fi/en/publications/459fc421-8904-41fb-bdba-6feab0050a41 edited-book 2006 Tampere University Of Technology, Tampere International Center for Signal Processing, TICSP Series 2022-05-25T22:51:07.958Z source-work-id 6e35b2c1-6be6-4d84-a9bc-ae4dd89bbf2f 6e35b2c1-6be6-4d84-a9bc-ae4dd89bbf2f self eid 2-s2.0-33748782266 2-s2.0-33748782266 self 2017-08-28T12:54:33.020Z 2022-05-25T22:51:07.958Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Simulation study of deterministic differential equation model for protein kinase C signaling: sensitivity of stimuli, parameter values, and initial concentrations source-work-id 6e35b2c1-6be6-4d84-a9bc-ae4dd89bbf2f 6e35b2c1-6be6-4d84-a9bc-ae4dd89bbf2f self eid 2-s2.0-33748782266 2-s2.0-33748782266 self https://researchportal.tuni.fi/en/publications/6e35b2c1-6be6-4d84-a9bc-ae4dd89bbf2f conference-paper 2006 Proceedings of the 4th TICSP Workshop on Computational Systems Biology, WCSB 2006, Tampere, Finland, 12-13 June 2006. TICSP series 2022-05-25T22:51:07.995Z wosuid 000226605700011 000226605700011 self doi 10.1093/bioinformatics/bti018 10.1093/bioinformatics/bti018 self source-work-id 3709737f-2da0-4a4e-ad32-e7957d27620f 3709737f-2da0-4a4e-ad32-e7957d27620f self pmid 15358616 15358616 self eid 2-s2.0-13844266102 2-s2.0-13844266102 self 2016-09-21T17:41:34.868Z 2022-05-25T04:26:20.992Z https://orcid.org/client/0000-0002-9157-3431 0000-0002-9157-3431 orcid.org Europe PubMed Central https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Simulation tools for biochemical networks: evaluation of performance and usability. pmid 15358616 15358616 self doi 10.1093/bioinformatics/bti018 10.1093/bioinformatics/bti018 self http://europepmc.org/abstract/med/15358616 journal-article 2005 02 2016-09-21T17:59:59.995Z 2022-05-25T04:26:23.104Z https://orcid.org/client/0000-0002-5982-8983 0000-0002-5982-8983 orcid.org Scopus - Elsevier https://orcid.org/0000-0002-0456-1185 0000-0002-0456-1185 orcid.org Tiina Manninen Simulation tools for biochemical networks: Evaluation of performance and usability doi 10.1093/bioinformatics/bti018 10.1093/bioinformatics/bti018 self eid 2-s2.0-13844266102 2-s2.0-13844266102 self http://www.scopus.com/inward/record.url?eid=2-s2.0-13844266102&partnerID=MN8TOARS journal-article 2005 Bioinformatics 2017-08-28T12:54:33.021Z 2022-05-25T22:51:07.995Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Simulation tools for biochemical networks: evaluation of performance and usability source-work-id 3709737f-2da0-4a4e-ad32-e7957d27620f 3709737f-2da0-4a4e-ad32-e7957d27620f self wosuid 000226605700011 000226605700011 self eid 2-s2.0-13844266102 2-s2.0-13844266102 self doi 10.1093/bioinformatics/bti018 10.1093/bioinformatics/bti018 self https://researchportal.tuni.fi/en/publications/3709737f-2da0-4a4e-ad32-e7957d27620f journal-article 2005 Bioinformatics 2022-05-25T22:51:08.014Z source-work-id 9b7fc5e1-5442-41d1-9319-e159defcec5a 9b7fc5e1-5442-41d1-9319-e159defcec5a self 2017-08-28T12:54:33.022Z 2022-05-25T22:51:08.014Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University A program to obtain signal transduction models from a database source-work-id 9b7fc5e1-5442-41d1-9319-e159defcec5a 9b7fc5e1-5442-41d1-9319-e159defcec5a self https://researchportal.tuni.fi/en/publications/9b7fc5e1-5442-41d1-9319-e159defcec5a conference-paper 2005 Proceedings of The 3rd TICSP Workshop on Computational Systems Biology, WCSB 2005, Tampere, Finland, 13-14 June 2005 2022-05-25T22:51:08.008Z eid 2-s2.0-19644387496 2-s2.0-19644387496 self source-work-id 301a2145-5b51-46dc-bd0e-143568c0f95f 301a2145-5b51-46dc-bd0e-143568c0f95f self 2017-08-28T12:54:33.022Z 2022-05-25T22:51:08.008Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Incorporating stochasticity into deterministic differential equation models for 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https://researchportal.tuni.fi/en/publications/6bcb454e-5fde-4aeb-b37e-557bd27c9e83 report 2004 Tampere University of Technology, Institute of Signal Processing, Report 2022-05-25T22:51:08.019Z source-work-id df8ad827-d40d-495b-9173-21b49a9ae193 df8ad827-d40d-495b-9173-21b49a9ae193 self 2017-08-28T12:54:33.023Z 2022-05-25T22:51:08.019Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Varying stimulus and parameter values in the PKC pathway model source-work-id df8ad827-d40d-495b-9173-21b49a9ae193 df8ad827-d40d-495b-9173-21b49a9ae193 self https://researchportal.tuni.fi/en/publications/df8ad827-d40d-495b-9173-21b49a9ae193 conference-paper 2004 Proceedings of the 2nd TICSP Workshop on Computational Systems Biology, WCSB'2004, Silja Opera, Helsinki-St.Petersburg, 14-16 June 2004 2022-05-25T22:51:08.042Z source-work-id ca0966d2-a83d-42f5-9905-b6e84115ac54 ca0966d2-a83d-42f5-9905-b6e84115ac54 self 2017-08-28T12:54:33.027Z 2022-05-25T22:51:08.042Z https://orcid.org/client/APP-N0TAO4G9BBK9PWHT APP-N0TAO4G9BBK9PWHT orcid.org Tampere University Hermosolun solunsisäisten toimintojen matemaattinen mallinnus ja simulointi source-work-id ca0966d2-a83d-42f5-9905-b6e84115ac54 ca0966d2-a83d-42f5-9905-b6e84115ac54 self https://researchportal.tuni.fi/en/publications/ca0966d2-a83d-42f5-9905-b6e84115ac54 other 2003