package eu.dnetlib.dhp.oa.graph.dump.projectssubset; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import java.util.Objects; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.oa.graph.dump.Utils; import eu.dnetlib.dhp.schema.dump.oaf.graph.Project; import scala.Tuple2; public class ProjectsSubsetSparkJob implements Serializable { private static final Logger log = LoggerFactory.getLogger(ProjectsSubsetSparkJob.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( ProjectsSubsetSparkJob.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/graph/dump/project_subset_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); final String projectListPath = parser.get("projectListPath"); log.info("projectListPath: {}", projectListPath); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { Utils.removeOutputDir(spark, outputPath); getNewProjectList(spark, inputPath, outputPath, projectListPath); }); } private static void getNewProjectList(SparkSession spark, String inputPath, String outputPath, String projectListPath) { Dataset projectList = spark.read().textFile(projectListPath); Dataset projects; projects = Utils.readPath(spark, inputPath, Project.class); projects .joinWith(projectList, projects.col("id").equalTo(projectList.col("value")), "left") .map((MapFunction, Project>) t2 -> { if (Optional.ofNullable(t2._2()).isPresent()) return null; return t2._1(); }, Encoders.bean(Project.class)) .filter(Objects::nonNull) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(outputPath); Utils .readPath(spark, outputPath, Project.class) .map((MapFunction) p -> p.getId(), Encoders.STRING()) .write() .mode(SaveMode.Append) .option("compression", "gzip") .text(projectListPath); } }