package eu.dnetlib.dhp.countrypropagation; import static eu.dnetlib.dhp.PropagationConstant.*; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.util.ArrayList; import java.util.HashSet; import java.util.Set; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.countrypropagation.pojo.CountrySbs; import eu.dnetlib.dhp.countrypropagation.pojo.DatasourceCountry; import eu.dnetlib.dhp.countrypropagation.pojo.ResultCountrySet; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.ForeachFunction; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.api.java.function.MapGroupsFunction; import org.apache.spark.sql.*; import org.apache.spark.sql.Dataset; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.EntityEntityRel; import eu.dnetlib.dhp.PropagationConstant; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.schema.oaf.*; import scala.Tuple2; public class PrepareResultCountrySet { private static final Logger log = LoggerFactory.getLogger(PrepareResultCountrySet.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( PrepareResultCountrySet.class .getResourceAsStream( "/eu/dnetlib/dhp/countrypropagation/input_prepareresultcountry_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = isSparkSessionManaged(parser); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); String workingPath = parser.get("workingPath"); log.info("workingPath: {}", workingPath); String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String resultClassName = parser.get("resultTableName"); log.info("resultTableName: {}", resultClassName); final String resultType = resultClassName.substring(resultClassName.lastIndexOf(".") + 1).toLowerCase(); log.info("resultType: {}", resultType); Class resultClazz = (Class) Class.forName(resultClassName); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { removeOutputDir(spark, workingPath + "/preparedInfo/" + resultType); getPotentialResultToUpdate( spark, inputPath, workingPath, resultType, resultClazz); }); } private static void getPotentialResultToUpdate( SparkSession spark, String inputPath, String workingPath, String resultType, Class resultClazz) { final String datasourcecountrypath = workingPath + "/datasourceCountry"; final String cfhbpath = workingPath + "/resultCfHb/" + resultType; final String outputPath = workingPath + "/preparedInfo/" + resultType; PropagationConstant.createCfHbforResult(spark, inputPath, cfhbpath, resultClazz); Dataset datasource_country = readPath(spark, datasourcecountrypath, DatasourceCountry.class); Dataset cfhb = readPath(spark, cfhbpath, EntityEntityRel.class); datasource_country .joinWith( cfhb, cfhb .col("entity2Id") .equalTo(datasource_country.col("datasourceId"))) .groupByKey( (MapFunction, String>) t2 -> t2._2().getEntity1Id(), Encoders.STRING()) .mapGroups( (MapGroupsFunction, ResultCountrySet>) (k, it) -> { ResultCountrySet rcs = new ResultCountrySet(); rcs.setResultId(k); Set set = new HashSet<>(); Set countryCodes = new HashSet<>(); DatasourceCountry first = it.next()._1(); countryCodes.add(first.getCountry().getClassid()); set.add(first.getCountry()); it.forEachRemaining(t2 -> { if (!countryCodes.contains(t2._1().getCountry().getClassid())) set.add(t2._1().getCountry()); }); rcs.setCountrySet(new ArrayList<>(set)); return rcs; }, Encoders.bean(ResultCountrySet.class)) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(outputPath); } }