package eu.dnetlib.dhp.export.zenodo; import java.io.*; import org.apache.commons.compress.archivers.tar.TarArchiveEntry; import org.apache.commons.compress.archivers.tar.TarArchiveOutputStream; import org.apache.commons.io.IOUtils; import org.apache.hadoop.conf.Configuration; import org.apache.hadoop.fs.*; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.application.ArgumentApplicationParser; public class MakeTar implements Serializable { private static final Logger log = LoggerFactory.getLogger(MakeTar.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( MakeTar.class .getResourceAsStream( "/eu/dnetlib/dhp/export/input_maketar_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); final String outputPath = parser.get("targetPath"); log.info("hdfsPath: {}", outputPath); final String hdfsNameNode = parser.get("nameNode"); log.info("nameNode: {}", hdfsNameNode); final String inputPath = parser.get("sourcePath"); log.info("input path : {}", inputPath); Configuration conf = new Configuration(); conf.set("fs.defaultFS", hdfsNameNode); FileSystem fileSystem = FileSystem.get(conf); makeTArArchive(fileSystem, inputPath, outputPath); } public static void makeTArArchive(FileSystem fileSystem, String inputPath, String outputPath) throws IOException { RemoteIterator dir_iterator = fileSystem.listLocatedStatus(new Path(inputPath)); while (dir_iterator.hasNext()) { LocatedFileStatus fileStatus = dir_iterator.next(); Path p = fileStatus.getPath(); String p_string = p.toString(); String entity = p_string.substring(p_string.lastIndexOf("/") + 1); write(fileSystem, p_string, outputPath + "/" + entity + ".tar", entity); } } private static void write(FileSystem fileSystem, String inputPath, String outputPath, String dir_name) throws IOException { Path hdfsWritePath = new Path(outputPath); FSDataOutputStream fsDataOutputStream = null; if (fileSystem.exists(hdfsWritePath)) { fileSystem.delete(hdfsWritePath, true); } fsDataOutputStream = fileSystem.create(hdfsWritePath); TarArchiveOutputStream ar = new TarArchiveOutputStream(fsDataOutputStream.getWrappedStream()); RemoteIterator fileStatusListIterator = fileSystem .listFiles( new Path(inputPath), true); while (fileStatusListIterator.hasNext()) { LocatedFileStatus fileStatus = fileStatusListIterator.next(); Path p = fileStatus.getPath(); String p_string = p.toString(); if (!p_string.endsWith("_SUCCESS")) { String name = p_string.substring(p_string.lastIndexOf("/") + 1); TarArchiveEntry entry = new TarArchiveEntry(dir_name + "/" + name + ".json.gz"); entry.setSize(fileStatus.getLen()); ar.putArchiveEntry(entry); InputStream is = fileSystem.open(fileStatus.getPath()); BufferedInputStream bis = new BufferedInputStream(is); int count; byte data[] = new byte[1024]; while ((count = bis.read(data, 0, data.length)) != -1) { ar.write(data, 0, count); } bis.close(); ar.closeArchiveEntry(); } } ar.close(); } }