package eu.dnetlib.dhp.oa.graph.clean; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import java.util.List; import org.apache.commons.io.FileUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.AfterAll; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.schema.oaf.Publication; import eu.dnetlib.dhp.schema.oaf.StructuredProperty; public class CleanContextTest { private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static SparkSession spark; private static Path workingDir; private static final Logger log = LoggerFactory.getLogger(CleanContextTest.class); @BeforeAll public static void beforeAll() throws IOException { workingDir = Files.createTempDirectory(CleanContextTest.class.getSimpleName()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(CleanContextTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); spark = SparkSession .builder() .appName(CleanContextTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } @Test public void testResultClean() throws Exception { final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/clean/publication_clean_context.json") .getPath(); final String prefix = "gcube "; spark .read() .textFile(sourcePath) .map( (MapFunction) r -> OBJECT_MAPPER.readValue(r, Publication.class), Encoders.bean(Publication.class)) .write() .json(workingDir.toString() + "/publication"); CleanContextSparkJob.main(new String[] { "--isSparkSessionManaged", Boolean.FALSE.toString(), "--inputPath", workingDir.toString() + "/publication", "-graphTableClassName", Publication.class.getCanonicalName(), "-workingPath", workingDir.toString() + "/working", "-contextId", "sobigdata", "-verifyParam", "gCube " }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/publication") .map(item -> OBJECT_MAPPER.readValue(item, Publication.class)); Assertions.assertEquals(7, tmp.count()); // original result with sobigdata context and gcube as starting string in the main title for the publication Assertions .assertEquals( 0, tmp .filter(p -> p.getId().equals("50|DansKnawCris::0224aae28af558f21768dbc6439c7a95")) .collect() .get(0) .getContext() .size()); // original result with sobigdata context without gcube as starting string in the main title for the publication Assertions .assertEquals( 1, tmp .filter(p -> p.getId().equals("50|DansKnawCris::20c414a3b1c742d5dd3851f1b67df2d9")) .collect() .get(0) .getContext() .size()); Assertions .assertEquals( "sobigdata::projects::2", tmp .filter(p -> p.getId().equals("50|DansKnawCris::20c414a3b1c742d5dd3851f1b67df2d9")) .collect() .get(0) .getContext() .get(0) .getId()); // original result with sobigdata context with gcube as starting string in the subtitle Assertions .assertEquals( 1, tmp .filter(p -> p.getId().equals("50|DansKnawCris::3c81248c335f0aa07e06817ece6fa6af")) .collect() .get(0) .getContext() .size()); Assertions .assertEquals( "sobigdata::projects::2", tmp .filter(p -> p.getId().equals("50|DansKnawCris::3c81248c335f0aa07e06817ece6fa6af")) .collect() .get(0) .getContext() .get(0) .getId()); List titles = tmp .filter(p -> p.getId().equals("50|DansKnawCris::3c81248c335f0aa07e06817ece6fa6af")) .collect() .get(0) .getTitle(); Assertions.assertEquals(1, titles.size()); Assertions.assertTrue(titles.get(0).getValue().toLowerCase().startsWith(prefix)); Assertions.assertEquals("subtitle", titles.get(0).getQualifier().getClassid()); // original result with sobigdata context with gcube not as starting string in the main title Assertions .assertEquals( 1, tmp .filter(p -> p.getId().equals("50|DansKnawCris::3c9f068ddc930360bec6925488a9a97f")) .collect() .get(0) .getContext() .size()); Assertions .assertEquals( "sobigdata::projects::1", tmp .filter(p -> p.getId().equals("50|DansKnawCris::3c9f068ddc930360bec6925488a9a97f")) .collect() .get(0) .getContext() .get(0) .getId()); titles = tmp .filter(p -> p.getId().equals("50|DansKnawCris::3c9f068ddc930360bec6925488a9a97f")) .collect() .get(0) .getTitle(); Assertions.assertEquals(1, titles.size()); Assertions.assertFalse(titles.get(0).getValue().toLowerCase().startsWith(prefix)); Assertions.assertTrue(titles.get(0).getValue().toLowerCase().contains(prefix.trim())); Assertions.assertEquals("main title", titles.get(0).getQualifier().getClassid()); // original result with sobigdata in context and also other contexts with gcube as starting string for the main // title Assertions .assertEquals( 1, tmp .filter(p -> p.getId().equals("50|DansKnawCris::4669a378a73661417182c208e6fdab53")) .collect() .get(0) .getContext() .size()); Assertions .assertEquals( "dh-ch", tmp .filter(p -> p.getId().equals("50|DansKnawCris::4669a378a73661417182c208e6fdab53")) .collect() .get(0) .getContext() .get(0) .getId()); titles = tmp .filter(p -> p.getId().equals("50|DansKnawCris::4669a378a73661417182c208e6fdab53")) .collect() .get(0) .getTitle(); Assertions.assertEquals(1, titles.size()); Assertions.assertTrue(titles.get(0).getValue().toLowerCase().startsWith(prefix)); Assertions.assertEquals("main title", titles.get(0).getQualifier().getClassid()); // original result with multiple main title one of which whith gcube as starting string and with 2 contextes Assertions .assertEquals( 1, tmp .filter(p -> p.getId().equals("50|DansKnawCris::4a9152e80f860eab99072e921d74a0ff")) .collect() .get(0) .getContext() .size()); Assertions .assertEquals( "dh-ch", tmp .filter(p -> p.getId().equals("50|DansKnawCris::4a9152e80f860eab99072e921d74a0ff")) .collect() .get(0) .getContext() .get(0) .getId()); titles = tmp .filter(p -> p.getId().equals("50|DansKnawCris::4a9152e80f860eab99072e921d74a0ff")) .collect() .get(0) .getTitle(); Assertions.assertEquals(2, titles.size()); Assertions .assertTrue( titles .stream() .anyMatch( t -> t.getQualifier().getClassid().equals("main title") && t.getValue().toLowerCase().startsWith(prefix))); // original result without sobigdata in context with gcube as starting string for the main title Assertions .assertEquals( 1, tmp .filter(p -> p.getId().equals("50|dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8")) .collect() .get(0) .getContext() .size()); Assertions .assertEquals( "dh-ch", tmp .filter(p -> p.getId().equals("50|dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8")) .collect() .get(0) .getContext() .get(0) .getId()); titles = tmp .filter(p -> p.getId().equals("50|dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8")) .collect() .get(0) .getTitle(); Assertions.assertEquals(2, titles.size()); Assertions .assertTrue( titles .stream() .anyMatch( t -> t.getQualifier().getClassid().equals("main title") && t.getValue().toLowerCase().startsWith(prefix))); } }