package eu.dnetlib.dhp.oa.graph.dump.funderresults; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.api.java.function.MapGroupsFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.oa.graph.dump.Constants; import eu.dnetlib.dhp.oa.graph.dump.Utils; import eu.dnetlib.dhp.schema.common.ModelConstants; import eu.dnetlib.dhp.schema.oaf.Relation; import eu.dnetlib.dhp.schema.oaf.Result; import scala.Tuple2; /** * Selects the results linked to projects. Only for these results the dump will be performed. * The code to perform the dump and to expend the dumped results with the informaiton related to projects * is the one used for the dump of the community products */ public class SparkResultLinkedToProject implements Serializable { private static final Logger log = LoggerFactory.getLogger(SparkResultLinkedToProject.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( SparkResultLinkedToProject.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/graph/dump/input_parameters_link_prj.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); final String resultClassName = parser.get("resultTableName"); log.info("resultTableName: {}", resultClassName); final String relationPath = parser.get("relationPath"); log.info("relationPath: {}", relationPath); Class inputClazz = (Class) Class.forName(resultClassName); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { Utils.removeOutputDir(spark, outputPath); writeResultsLinkedToProjects(spark, inputClazz, inputPath, outputPath, relationPath); }); } private static void writeResultsLinkedToProjects(SparkSession spark, Class inputClazz, String inputPath, String outputPath, String relationPath) { Dataset results = Utils .readPath(spark, inputPath, inputClazz) .filter("dataInfo.deletedbyinference = false and datainfo.invisible = false"); Dataset relations = Utils .readPath(spark, relationPath, Relation.class) .filter( "dataInfo.deletedbyinference = false and lower(relClass) = '" + ModelConstants.IS_PRODUCED_BY.toLowerCase() + "'"); relations .joinWith( results, relations.col("source").equalTo(results.col("id")), "inner") .groupByKey( (MapFunction, String>) value -> value ._2() .getId(), Encoders.STRING()) .mapGroups((MapGroupsFunction, R>) (k, it) -> { return it.next()._2(); }, Encoders.bean(inputClazz)) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(outputPath); } }