package eu.dnetlib.dhp.oa.graph.dump; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import java.util.Optional; import java.util.Set; import java.util.stream.Collectors; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.google.gson.Gson; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.schema.dump.oaf.Result; import eu.dnetlib.dhp.utils.ISLookupClientFactory; import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService; public class SparkSplitForCommunity implements Serializable { private static final Logger log = LoggerFactory.getLogger(SparkSplitForCommunity.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( SparkSplitForCommunity.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/graph/dump/split_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); // final String resultClassName = parser.get("resultTableName"); // log.info("resultTableName: {}", resultClassName); final String isLookUpUrl = parser.get("isLookUpUrl"); log.info("isLookUpUrl: {}", isLookUpUrl); final Optional cm = Optional.ofNullable(parser.get("communityMap")); SparkConf conf = new SparkConf(); CommunityMap communityMap; if (!isLookUpUrl.equals("BASEURL:8280/is/services/isLookUp")) { QueryInformationSystem queryInformationSystem = new QueryInformationSystem(); queryInformationSystem.setIsLookUp(getIsLookUpService(isLookUpUrl)); communityMap = queryInformationSystem.getCommunityMap(); } else { communityMap = new Gson().fromJson(cm.get(), CommunityMap.class); } runWithSparkSession( conf, isSparkSessionManaged, spark -> { Utils.removeOutputDir(spark, outputPath); execSplit(spark, inputPath, outputPath, communityMap.keySet());// , inputClazz); }); } public static ISLookUpService getIsLookUpService(String isLookUpUrl) { return ISLookupClientFactory.getLookUpService(isLookUpUrl); } private static void execSplit(SparkSession spark, String inputPath, String outputPath, Set communities) {// }, Class inputClazz) { Dataset result = Utils .readPath(spark, inputPath + "/publication", Result.class) .union(Utils.readPath(spark, inputPath + "/dataset", Result.class)) .union(Utils.readPath(spark, inputPath + "/orp", Result.class)) .union(Utils.readPath(spark, inputPath + "/software", Result.class)); communities .stream() .forEach(c -> printResult(c, result, outputPath)); } private static void printResult(String c, Dataset result, String outputPath) { result .filter(r -> containsCommunity(r, c)) .repartition(1) .write() .option("compression", "gzip") .mode(SaveMode.Append) .json(outputPath + "/" + c); } private static boolean containsCommunity(Result r, String c) { if (Optional.ofNullable(r.getContext()).isPresent()) { return r .getContext() .stream() .filter(con -> con.getCode().equals(c)) .collect(Collectors.toList()) .size() > 0; } return false; } }