package eu.dnetlib.dhp.oa.graph.dump; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import java.util.HashMap; import org.apache.commons.io.FileUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.Row; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.AfterAll; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.oa.graph.dump.community.ResultProject; import eu.dnetlib.dhp.oa.graph.dump.community.SparkPrepareResultProject; public class PrepareResultProjectJobTest { private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static SparkSession spark; private static Path workingDir; private static final Logger log = LoggerFactory .getLogger(eu.dnetlib.dhp.oa.graph.dump.PrepareResultProjectJobTest.class); private static final HashMap map = new HashMap<>(); @BeforeAll public static void beforeAll() throws IOException { workingDir = Files .createTempDirectory(eu.dnetlib.dhp.oa.graph.dump.PrepareResultProjectJobTest.class.getSimpleName()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(eu.dnetlib.dhp.oa.graph.dump.PrepareResultProjectJobTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); spark = SparkSession .builder() .appName(eu.dnetlib.dhp.oa.graph.dump.PrepareResultProjectJobTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } @Test public void testNoMatch() throws Exception { final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/resultProject/no_match") .getPath(); SparkPrepareResultProject.main(new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-outputPath", workingDir.toString() + "/preparedInfo", "-sourcePath", sourcePath }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/preparedInfo") .map(item -> OBJECT_MAPPER.readValue(item, ResultProject.class)); org.apache.spark.sql.Dataset verificationDataset = spark .createDataset(tmp.rdd(), Encoders.bean(ResultProject.class)); Assertions.assertEquals(0, verificationDataset.count()); } @Test public void testMatchOne() throws Exception { final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/resultProject/match_one") .getPath(); SparkPrepareResultProject.main(new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-outputPath", workingDir.toString() + "/preparedInfo", "-sourcePath", sourcePath }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/preparedInfo") .map(item -> OBJECT_MAPPER.readValue(item, ResultProject.class)); org.apache.spark.sql.Dataset verificationDataset = spark .createDataset(tmp.rdd(), Encoders.bean(ResultProject.class)); Assertions.assertTrue(verificationDataset.count() == 1); Assertions .assertEquals( 1, verificationDataset.filter("resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'").count()); verificationDataset.createOrReplaceTempView("table"); Dataset check = spark .sql( "Select projList.provenance.provenance " + "from table " + "lateral view explode (projectsList) pl as projList"); Assertions.assertEquals(1, check.filter("provenance = 'sysimport:crosswalk:entityregistry'").count()); verificationDataset.show(false); } @Test public void testMatch() throws Exception { final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/resultProject/match") .getPath(); SparkPrepareResultProject.main(new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-outputPath", workingDir.toString() + "/preparedInfo", "-sourcePath", sourcePath }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/preparedInfo") .map(item -> OBJECT_MAPPER.readValue(item, ResultProject.class)); org.apache.spark.sql.Dataset verificationDataset = spark .createDataset(tmp.rdd(), Encoders.bean(ResultProject.class)); Assertions.assertTrue(verificationDataset.count() == 2); Assertions .assertEquals( 1, verificationDataset.filter("resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'").count()); Assertions .assertEquals( 1, verificationDataset.filter("resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'").count()); verificationDataset.createOrReplaceTempView("dataset"); String query = "select resultId, MyT.id project , MyT.title title, MyT.acronym acronym , MyT.provenance.provenance provenance " + "from dataset " + "lateral view explode(projectsList) p as MyT "; org.apache.spark.sql.Dataset resultExplodedProvenance = spark.sql(query); Assertions.assertEquals(3, resultExplodedProvenance.count()); Assertions .assertEquals( 2, resultExplodedProvenance .filter("resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'") .count()); Assertions .assertEquals( 1, resultExplodedProvenance .filter("resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'") .count()); Assertions .assertEquals( 2, resultExplodedProvenance .filter("project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6'") .count()); Assertions .assertEquals( 1, resultExplodedProvenance .filter( "project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6' and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'") .count()); Assertions .assertEquals( 1, resultExplodedProvenance .filter( "project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6' and resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'") .count()); Assertions .assertEquals( 1, resultExplodedProvenance .filter("project = '40|aka_________::03376222b28a3aebf2730ac514818d04'") .count()); Assertions .assertEquals( 1, resultExplodedProvenance .filter( "project = '40|aka_________::03376222b28a3aebf2730ac514818d04' and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'") .count()); Assertions .assertEquals( 3, resultExplodedProvenance.filter("provenance = 'sysimport:crosswalk:entityregistry'").count()); } }