package eu.dnetlib.dhp.projecttoresult; import static eu.dnetlib.dhp.PropagationConstant.*; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.util.ArrayList; import java.util.Iterator; import java.util.List; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.FlatMapFunction; import org.apache.spark.sql.*; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.countrypropagation.PrepareDatasourceCountryAssociation; import eu.dnetlib.dhp.schema.common.ModelConstants; import eu.dnetlib.dhp.schema.oaf.Relation; import scala.Tuple2; public class SparkResultToProjectThroughSemRelJob { private static final Logger log = LoggerFactory.getLogger(PrepareDatasourceCountryAssociation.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( SparkResultToProjectThroughSemRelJob.class .getResourceAsStream( "/eu/dnetlib/dhp/projecttoresult/input_projecttoresult_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = isSparkSessionManaged(parser); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String outputPath = parser.get("outputPath"); log.info("outputPath {}: ", outputPath); final String potentialUpdatePath = parser.get("potentialUpdatePath"); log.info("potentialUpdatePath {}: ", potentialUpdatePath); final String alreadyLinkedPath = parser.get("alreadyLinkedPath"); log.info("alreadyLinkedPath {}: ", alreadyLinkedPath); final Boolean saveGraph = Boolean.valueOf(parser.get("saveGraph")); log.info("saveGraph: {}", saveGraph); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { if (isTest(parser)) { removeOutputDir(spark, outputPath); } execPropagation( spark, outputPath, alreadyLinkedPath, potentialUpdatePath, saveGraph); }); } private static void execPropagation( SparkSession spark, String outputPath, String alreadyLinkedPath, String potentialUpdatePath, Boolean saveGraph) { Dataset toaddrelations = readPath(spark, potentialUpdatePath, ResultProjectSet.class); Dataset alreadyLinked = readPath(spark, alreadyLinkedPath, ResultProjectSet.class); if (saveGraph) { toaddrelations .joinWith( alreadyLinked, toaddrelations.col("resultId").equalTo(alreadyLinked.col("resultId")), "left_outer") .flatMap(mapRelationRn(), Encoders.bean(Relation.class)) .write() .mode(SaveMode.Append) .option("compression", "gzip") .json(outputPath); } } private static FlatMapFunction, Relation> mapRelationRn() { return value -> { List new_relations = new ArrayList<>(); ResultProjectSet potential_update = value._1(); Optional already_linked = Optional.ofNullable(value._2()); if (already_linked.isPresent()) { already_linked .get() .getProjectSet() .stream() .forEach( (p -> { potential_update.getProjectSet().remove(p); })); } String resId = potential_update.getResultId(); potential_update .getProjectSet() .stream() .forEach( projectId -> { new_relations .add( getRelation( resId, projectId, ModelConstants.IS_PRODUCED_BY, ModelConstants.RESULT_PROJECT, ModelConstants.OUTCOME, PROPAGATION_DATA_INFO_TYPE, PROPAGATION_RELATION_RESULT_PROJECT_SEM_REL_CLASS_ID, PROPAGATION_RELATION_RESULT_PROJECT_SEM_REL_CLASS_NAME)); new_relations .add( getRelation( projectId, resId, ModelConstants.PRODUCES, ModelConstants.RESULT_PROJECT, ModelConstants.OUTCOME, PROPAGATION_DATA_INFO_TYPE, PROPAGATION_RELATION_RESULT_PROJECT_SEM_REL_CLASS_ID, PROPAGATION_RELATION_RESULT_PROJECT_SEM_REL_CLASS_NAME)); }); return new_relations.iterator(); }; } }