package eu.dnetlib.dhp.oa.graph.fuse; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.common.HdfsSupport; import eu.dnetlib.dhp.oa.graph.raw.MigrateMongoMdstoresApplication; import eu.dnetlib.dhp.schema.common.ModelSupport; import eu.dnetlib.dhp.schema.oaf.Oaf; import org.apache.commons.io.IOUtils; import org.apache.commons.lang3.StringUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.FilterFunction; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import java.util.Optional; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; public class DispatchEntitiesSparkJob { private static final Logger log = LoggerFactory.getLogger(DispatchEntitiesSparkJob.class); public static void main(final String[] args) throws Exception { final ArgumentApplicationParser parser = new ArgumentApplicationParser( IOUtils .toString( MigrateMongoMdstoresApplication.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/graph/dispatch_entities_bytype_parameters.json"))); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String sourcePath = parser.get("sourcePath"); final String targetPath = parser.get("graphRawPath"); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { removeOutputDir(spark, targetPath); ModelSupport.oafTypes .values() .forEach(clazz -> processEntity(spark, clazz, sourcePath, targetPath)); }); } private static void processEntity( final SparkSession spark, final Class clazz, final String sourcePath, final String targetPath) { final String type = clazz.getSimpleName().toLowerCase(); log.info("Processing entities ({}) in file: {}", type, sourcePath); spark .read() .textFile(sourcePath) .filter((FilterFunction) value -> isEntityType(value, type)) .map( (MapFunction) l -> StringUtils.substringAfter(l, "|"), Encoders.STRING()) .write() .option("compression", "gzip") .mode(SaveMode.Overwrite) .text(targetPath + "/" + type); } private static boolean isEntityType(final String line, final String type) { return StringUtils.substringBefore(line, "|").equalsIgnoreCase(type); } private static void removeOutputDir(SparkSession spark, String path) { HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration()); } }