package eu.dnetlib.dhp.broker.oa; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.util.LongAccumulator; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.broker.objects.OaBrokerRelatedSoftware; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.broker.oa.util.BrokerConstants; import eu.dnetlib.dhp.broker.oa.util.ClusterUtils; import eu.dnetlib.dhp.broker.oa.util.ConversionUtils; import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedSoftware; import eu.dnetlib.dhp.schema.common.ModelConstants; import eu.dnetlib.dhp.schema.oaf.Relation; import eu.dnetlib.dhp.schema.oaf.Software; public class PrepareRelatedSoftwaresJob { private static final Logger log = LoggerFactory.getLogger(PrepareRelatedSoftwaresJob.class); public static void main(final String[] args) throws Exception { final ArgumentApplicationParser parser = new ArgumentApplicationParser( IOUtils .toString( PrepareRelatedSoftwaresJob.class .getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json"))); parser.parseArgument(args); final Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String graphPath = parser.get("graphPath"); log.info("graphPath: {}", graphPath); final String workingDir = parser.get("workingDir"); log.info("workingDir: {}", workingDir); final String relsPath = workingDir + "/relatedSoftwares"; log.info("relsPath: {}", relsPath); final SparkConf conf = new SparkConf(); runWithSparkSession(conf, isSparkSessionManaged, spark -> { ClusterUtils.removeDir(spark, relsPath); final LongAccumulator total = spark.sparkContext().longAccumulator("total_rels"); final Dataset softwares = ClusterUtils .readPath(spark, graphPath + "/software", Software.class) .filter(sw -> !ClusterUtils.isDedupRoot(sw.getId())) .map(ConversionUtils::oafSoftwareToBrokerSoftware, Encoders.bean(OaBrokerRelatedSoftware.class)); final Dataset rels = ClusterUtils .readPath(spark, graphPath + "/relation", Relation.class) .filter(r -> r.getDataInfo().getDeletedbyinference()) .filter(r -> r.getRelType().equals(ModelConstants.RESULT_RESULT)) .filter(r -> !r.getRelClass().equals(BrokerConstants.IS_MERGED_IN_CLASS)) .filter(r -> !ClusterUtils.isDedupRoot(r.getSource())) .filter(r -> !ClusterUtils.isDedupRoot(r.getTarget())); final Dataset dataset = rels .joinWith(softwares, softwares.col("openaireId").equalTo(rels.col("target")), "inner") .map(t -> new RelatedSoftware(t._1.getSource(), t._2), Encoders.bean(RelatedSoftware.class)); ClusterUtils.save(dataset, relsPath, RelatedSoftware.class, total); }); } }