Graph Construction [HYBRID]
Data Provision
30
reuse cached content from the PROD aggregation system
reuseProdContent
true
set the PROD aggregator content path
prodContentPath
/tmp/core_aggregator
Set the path containing the PROD AGGREGATOR graph
prodAggregatorGraphPath
/tmp/core_provision/graph/00_prod_graph_aggregator
reuse cached content from the BETA aggregation system
reuseBetaContent
true
set the BETA aggregator content path
betaContentPath
/tmp/beta_aggregator
Set the path containing the BETA AGGREGATOR graph
betaAggregatorGraphPath
/tmp/core_provision/graph/00_beta_graph_aggregator
Set the IS lookup service address
isLookUpUrl
http://services.openaire.eu:8280/is/services/isLookUp?wsdl
Set the target path to store the MERGED graph
mergedGraphPath
/tmp/core_provision/graph/01_graph_merged
Set the target path to store the RAW graph
rawGraphPath
/tmp/core_provision/graph/02_graph_raw
Set the target path to store the DEDUPED graph
dedupGraphPath
/tmp/core_provision/graph/03_graph_dedup
Set the target path to store the INFERRED graph
inferredGraphPath
/tmp/core_provision/graph/04_graph_inferred
Set the target path to store the CONSISTENCY graph
consistentGraphPath
/tmp/core_provision/graph/05_graph_consistent
Set the target path to store the ORCID enriched graph
orcidGraphPath
/tmp/core_provision/graph/06_graph_orcid
Set the target path to store the BULK TAGGED graph
bulkTaggingGraphPath
/tmp/core_provision/graph/07_graph_bulktagging
Set the target path to store the AFFILIATION from INSTITUTIONAL REPOS graph
affiliationGraphPath
/tmp/core_provision/graph/08_graph_affiliation
Set the target path to store the COMMUNITY from SELECTED SOURCES graph
communityOrganizationGraphPath
/tmp/core_provision/graph/09_graph_comunity_organization
Set the target path to store the FUNDING from SEMANTIC RELATION graph
fundingGraphPath
/tmp/core_provision/graph/10_graph_funding
Set the target path to store the COMMUNITY from SEMANTIC RELATION graph
communitySemRelGraphPath
/tmp/core_provision/graph/11_graph_comunity_sem_rel
Set the target path to store the COUNTRY enriched graph
countryGraphPath
/tmp/core_provision/graph/12_graph_country
Set the target path to store the CLEANED graph
cleanedGraphPath
/tmp/core_provision/graph/13_graph_cleaned
Set the target path to store the blacklisted graph
blacklistedGraphPath
/tmp/core_provision/graph/14_graph_blacklisted
Set the map of paths for the Bulk Tagging
bulkTaggingPathMap
{"author" : "$['author'][*]['fullname']", "title" : "$['title'][*]['value']", "orcid" : "$['author'][*]['pid'][*][?(@['key']=='ORCID')]['value']", "contributor" : "$['contributor'][*]['value']", "description" : "$['description'][*]['value']"}
Set the map of associations organization, community list for the propagation of community to result through organization
propagationOrganizationCommunityMap
{"20|corda__h2020::3fb05a9524c3f790391261347852f638":["mes","euromarine"], "20|corda__h2020::e8dbe14cca9bf6fce09d468872f813f8":["mes","euromarine"], "20|snsf________::9b253f265e3bef5cae6d881fdf61aceb":["mes","euromarine"],"20|rcuk________::e054eea0a47665af8c3656b5785ccf76":["mes","euromarine"],"20|corda__h2020::edc18d67c9b11fb616ca9f6e1db1b151":["mes","euromarine"],"20|rcuk________::d5736d9da90521ddcdc7828a05a85e9a":["mes","euromarine"],"20|corda__h2020::f5d418d3aa1cf817ddefcc3fdc039f27":["mes","euromarine"],"20|snsf________::8fa091f8f25a846779acb4ea97b50aef":["mes","euromarine"],"20|corda__h2020::81e020977211c2c40fae2e1a50bffd71":["mes","euromarine"],"20|corda_______::81e020977211c2c40fae2e1a50bffd71":["mes","euromarine"],"20|snsf________::31d0a100e54e3cdb3c6f52d91e638c78":["mes","euromarine"],"20|corda__h2020::ea379ef91b8cc86f9ac5edc4169292db":["mes","euromarine"],"20|corda__h2020::f75ee2ee48e5cb0ec8c8d30aaa8fef70":["mes","euromarine"],"20|rcuk________::e16010089551a1a9182a94604fc0ea59":["mes","euromarine"],"20|corda__h2020::38531a2cce7c5c347ffc439b07c1f43b":["mes","euromarine"],"20|corda_______::38531a2cce7c5c347ffc439b07c1f43b":["mes","euromarine"],"20|grid________::b2cbbf5eadbbf87d534b022bad3191d7":["mes","euromarine"],"20|snsf________::74730ef1439d7f7636a8be58a6b471b8":["mes","euromarine"],"20|nsf_________::ad72e19043a5a467e35f9b444d11563e":["mes","euromarine"],"20|rcuk________::0fc3e92500290902a2d38ec2445e74c3":["mes","euromarine"],"20|grid________::ad2c29905da0eb3c06b3fa80cacd89ea":["mes","euromarine"],"20|corda__h2020::30b53e4d63d3724f00acb9cbaca40860":["mes","euromarine"],"20|corda__h2020::f60f84bee14ad93f0db0e49af1d5c317":["mes","euromarine"], "20|corda__h2020::7bf251ac3765b5e89d82270a1763d09f":["mes","euromarine"], "20|corda__h2020::65531bd11be9935948c7f2f4db1c1832":["mes","euromarine"], "20|corda__h2020::e0e98f86bbc76638bbb72a8fe2302946":["mes","euromarine"], "20|snsf________::3eb43582ac27601459a8d8b3e195724b":["mes","euromarine"], "20|corda__h2020::af2481dab65d06c8ea0ae02b5517b9b6":["mes","euromarine"], "20|corda__h2020::c19d05cfde69a50d3ebc89bd0ee49929":["mes","euromarine"], "20|corda__h2020::af0bfd9fc09f80d9488f56d71a9832f0":["mes","euromarine"], "20|rcuk________::f33c02afb0dc66c49d0ed97ca5dd5cb0":["beopen"],
"20|grid________::a867f78acdc5041b34acfe4f9a349157":["beopen"], "20|grid________::7bb116a1a9f95ab812bf9d2dea2be1ff":["beopen"], "20|corda__h2020::6ab0e0739dbe625b99a2ae45842164ad":["beopen"], "20|corda__h2020::8ba50792bc5f4d51d79fca47d860c602":["beopen"], "20|corda_______::8ba50792bc5f4d51d79fca47d860c602":["beopen"], "20|corda__h2020::e70e9114979e963eef24666657b807c3":["beopen"], "20|corda_______::e70e9114979e963eef24666657b807c3":["beopen"], "20|corda_______::15911e01e9744d57205825d77c218737":["beopen"], "20|opendoar____::056a41e24e2a9a67215e87bbee6a80ab":["beopen"], "20|opendoar____::7f67f2e6c6fbb0628f8160fcd3d92ae3":["beopen"], "20|grid________::a8ecfd7c084e561168bcbe6bf0daf3e3":["beopen"], "20|corda_______::7bbe6cc5d8ec1864739a04b0d020c9e9":["beopen"], "20|corda_______::3ff558e30c2e434d688539548300b050":["beopen"], "20|corda__h2020::5ffee5b3b83b33a8cf0e046877bd3a39":["beopen"], "20|corda__h2020::5187217e2e806a6df3579c46f82401bc":["beopen"], "20|grid________::5fa7e2709bcd945e26bfa18689adeec1":["beopen"], "20|corda_______::d8696683c53027438031a96ad27c3c07":["beopen"], "20|corda__h2020::d8696683c53027438031a96ad27c3c07":["beopen"], "20|rcuk________::23a79ebdfa59790864e4a485881568c1":["beopen"], "20|corda__h2020::b76cf8fe49590a966953c37e18608af9":["beopen"], "20|grid________::d2f0204126ee709244a488a4cd3b91c2":["beopen"], "20|corda__h2020::05aba9d2ed17533d15221e5655ac11e6":["beopen"], "20|grid________::802401579481dc32062bdee69f5e6a34":["beopen"], "20|corda__h2020::3f6d9d54cac975a517ba6b252c81582d":["beopen"]}
Set the dedup orchestrator name
dedupConfig
decisiontree-dedup-test
declares the ActionSet ids to promote in the RAW graph
actionSetIdsRawGraph
scholexplorer-dump,gridac-dump,doiboost-organizations,doiboost,orcidworks-no-doi,iis-wos-entities,iis-entities-software,iis-entities-patent
declares the ActionSet ids to promote in the INFERRED graph
actionSetIdsIISGraph
iis-researchinitiative,iis-document-citations,iis-document-affiliation,iis-document-classes,iis-document-similarities,iis-referenced-datasets-main,iis-referenced-datasets-preprocessing,iis-referenced-projects-main,iis-referenced-projects-preprocessing,iis-referenceextraction-pdb,document_software_url,iis-extracted-metadata,iis-communities,iis-referenced-patents,iis-covid-19
wait configurations
create the AGGREGATOR graph
executeOozieJob
IIS
{
'graphOutputPath' : 'betaAggregatorGraphPath',
'isLookupUrl' : 'isLookUpUrl',
'reuseContent' : 'reuseBetaContent',
'contentPath' : 'betaContentPath'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/graph/raw_all/oozie_app',
'mongoURL' : 'mongodb://beta.services.openaire.eu',
'mongoDb' : 'mdstore',
'postgresURL' : 'jdbc:postgresql://beta.services.openaire.eu:5432/dnet_openaireplus',
'postgresUser' : 'dnet',
'postgresPassword' : '',
'workingDir' : '/tmp/core_provision/working_dir/beta_aggregator'
}
build-report
create the AGGREGATOR graph
executeOozieJob
IIS
{
'graphOutputPath' : 'prodAggregatorGraphPath',
'isLookupUrl' : 'isLookUpUrl',
'reuseContent' : 'reuseProdContent',
'contentPath' : 'prodContentPath'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/graph/raw_all/oozie_app',
'mongoURL' : 'mongodb://services.openaire.eu',
'mongoDb' : 'mdstore',
'postgresURL' : 'jdbc:postgresql://postgresql.services.openaire.eu:5432/dnet_openaireplus',
'postgresUser' : 'dnet',
'postgresPassword' : '',
'workingDir' : '/tmp/core_provision/working_dir/prod_aggregator'
}
build-report
wait configurations
create the AGGREGATOR graph
executeOozieJob
IIS
{
'betaInputGgraphPath' : 'betaAggregatorGraphPath',
'prodInputGgraphPath' : 'prodAggregatorGraphPath',
'graphOutputPath' : 'mergedGraphPath'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/graph/merge/oozie_app',
'workingDir' : '/tmp/core_provision/working_dir/merge_graph'
}
build-report
create the RAW graph
executeOozieJob
IIS
{
'inputActionSetIds' : 'actionSetIdsRawGraph',
'inputGraphRootPath' : 'mergedGraphPath',
'outputGraphRootPath' : 'rawGraphPath',
'isLookupUrl' : 'isLookUpUrl'
}
{
'oozie.wf.application.path' : '/lib/dnet/actionmanager/wf/main/oozie_app',
'sparkExecutorCores' : '3',
'sparkExecutorMemory' : '10G',
'activePromoteDatasetActionPayload' : 'true',
'activePromoteDatasourceActionPayload' : 'true',
'activePromoteOrganizationActionPayload' : 'true',
'activePromoteOtherResearchProductActionPayload' : 'true',
'activePromoteProjectActionPayload' : 'true',
'activePromotePublicationActionPayload' : 'true',
'activePromoteRelationActionPayload' : 'true',
'activePromoteResultActionPayload' : 'true',
'activePromoteSoftwareActionPayload' : 'true',
'mergeAndGetStrategy' : 'MERGE_FROM_AND_GET',
'workingDir' : '/tmp/core_provision/working_dir/promoteActionsRaw'
}
build-report
search for duplicates in the raw graph
executeOozieJob
IIS
{
'actionSetId' : 'dedupConfig',
'graphBasePath' : 'rawGraphPath',
'dedupGraphPath': 'dedupGraphPath',
'isLookUpUrl' : 'isLookUpUrl'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/dedup/scan/oozie_app',
'workingPath' : '/tmp/core_provision/working_dir/dedup'
}
build-report
create the INFERRED graph
executeOozieJob
IIS
{
'inputActionSetIds' : 'actionSetIdsIISGraph',
'inputGraphRootPath' : 'dedupGraphPath',
'outputGraphRootPath' : 'inferredGraphPath',
'isLookupUrl' : 'isLookUpUrl'
}
{
'oozie.wf.application.path' : '/lib/dnet/actionmanager/wf/main/oozie_app',
'sparkExecutorCores' : '3',
'sparkExecutorMemory' : '10G',
'activePromoteDatasetActionPayload' : 'true',
'activePromoteDatasourceActionPayload' : 'true',
'activePromoteOrganizationActionPayload' : 'true',
'activePromoteOtherResearchProductActionPayload' : 'true',
'activePromoteProjectActionPayload' : 'true',
'activePromotePublicationActionPayload' : 'true',
'activePromoteRelationActionPayload' : 'true',
'activePromoteResultActionPayload' : 'true',
'activePromoteSoftwareActionPayload' : 'true',
'mergeAndGetStrategy' : 'MERGE_FROM_AND_GET',
'workingDir' : '/tmp/core_provision/working_dir/promoteActionsIIS'
}
build-report
mark duplicates as deleted and redistribute the relationships
executeOozieJob
IIS
{
'graphBasePath' : 'inferredGraphPath',
'dedupGraphPath': 'consistentGraphPath'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/dedup/consistency/oozie_app',
'workingPath' : '/tmp/core_provision/working_dir/dedup'
}
build-report
propagates ORCID among results linked by allowedsemrels semantic relationships
executeOozieJob
IIS
{
'sourcePath' : 'consistentGraphPath',
'outputPath': 'orcidGraphPath'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/enrichment/orcidtoresultfromsemrel/oozie_app',
'workingDir' : '/tmp/core_provision/working_dir/orcid',
'allowedsemrels' : 'isSupplementedBy;isSupplementTo',
'saveGraph' : 'true'
}
build-report
mark results respecting some rules as belonging to communities
executeOozieJob
IIS
{
'sourcePath' : 'orcidGraphPath',
'outputPath': 'bulkTaggingGraphPath',
'isLookUpUrl' : 'isLookUpUrl',
'pathMap' : 'bulkTaggingPathMap'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/enrichment/bulktag/oozie_app',
'workingDir' : '/tmp/core_provision/working_dir/bulktag'
}
build-report
creates relashionships between results and organizations when the organizations are associated to institutional repositories
executeOozieJob
IIS
{
'sourcePath' : 'bulkTaggingGraphPath',
'outputPath': 'affiliationGraphPath'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/enrichment/affiliation/oozie_app',
'workingDir' : '/tmp/core_provision/working_dir/affiliation',
'saveGraph' : 'true'
}
build-report
marks as belonging to communities the result collected from datasources related to the organizations specified in the organizationCommunityMap
executeOozieJob
IIS
{
'sourcePath' : 'affiliationGraphPath',
'outputPath': 'communityOrganizationGraphPath',
'organizationtoresultcommunitymap': 'propagationOrganizationCommunityMap'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/enrichment/community_organization/oozie_app',
'workingDir' : '/tmp/core_provision/working_dir/community_organization',
'saveGraph' : 'true'
}
build-report
created relation between projects and results linked to other results trough allowedsemrel semantic relations linked to projects
executeOozieJob
IIS
{
'sourcePath' : 'communityOrganizationGraphPath',
'outputPath': 'fundingGraphPath'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/enrichment/funding/oozie_app',
'workingDir' : '/tmp/core_provision/working_dir/funding',
'allowedsemrels' : 'isSupplementedBy;isSupplementTo',
'saveGraph' : 'true'
}
build-report
tag as belonging to communitites result in in allowedsemrels relation with other result already linked to communities
executeOozieJob
IIS
{
'sourcePath' : 'fundingGraphPath',
'outputPath': 'communitySemRelGraphPath',
'isLookUpUrl' : 'isLookUpUrl'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/enrichment/community_semrel/oozie_app',
'workingDir' : '/tmp/core_provision/working_dir/community_semrel',
'allowedsemrels' : 'isSupplementedBy;isSupplementTo',
'saveGraph' : 'true'
}
build-report
associated to results colleced from allowedtypes and those in the whithelist the country of the organization(s) handling the datasource it is collected from
executeOozieJob
IIS
{
'sourcePath' : 'communitySemRelGraphPath',
'outputPath': 'countryGraphPath'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/enrichment/country/oozie_app',
'sparkExecutorCores' : '3',
'sparkExecutorMemory' : '10G',
'workingDir' : '/tmp/core_provision/working_dir/country',
'allowedtypes' : 'pubsrepository::institutional',
'whitelist' : '10|opendoar____::300891a62162b960cf02ce3827bb363c',
'saveGraph' : 'true'
}
build-report
clean the properties in the graph typed as Qualifier according to the vocabulary indicated in schemeid
executeOozieJob
IIS
{
'graphInputPath' : 'countryGraphPath',
'graphOutputPath': 'cleanedGraphPath',
'isLookupUrl': 'isLookUpUrl'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/graph/clean/oozie_app',
'workingPath' : '/tmp/core_provision/working_dir/clean'
}
build-report
removes blacklisted relations
executeOozieJob
IIS
{
'sourcePath' : 'cleanedGraphPath',
'outputPath': 'blacklistedGraphPath'
}
{
'oozie.wf.application.path' : '/lib/dnet/oa/enrichment/blacklist/oozie_app',
'workingDir' : '/tmp/core_provision/working_dir/blacklist',
'postgresURL' : 'jdbc:postgresql://beta.services.openaire.eu:5432/dnet_openaireplus',
'postgresUser' : 'dnet',
'postgresPassword' : ''
}
build-report
wf_20200615_163630_609
2020-06-15T17:08:00+00:00
SUCCESS