master #59
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@ -4,6 +4,7 @@ package eu.dnetlib.doiboost.orcidnodoi;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import java.io.IOException;
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import java.io.IOException;
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import java.util.List;
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import java.util.Objects;
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import java.util.Objects;
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import java.util.Optional;
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import java.util.Optional;
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@ -106,20 +106,12 @@ public class PublicationToOaf implements Serializable {
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public static final String PID_TYPES = "dnet:pid_types";
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public static final String PID_TYPES = "dnet:pid_types";
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public Oaf generatePublicationActionsFromJson(final String json) {
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public Oaf generatePublicationActionsFromJson(final String json) {
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try {
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if (parsedPublications != null) {
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if (parsedPublications != null) {
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parsedPublications.add(1);
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parsedPublications.add(1);
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}
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}
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JsonElement jElement = new JsonParser().parse(json);
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JsonElement jElement = new JsonParser().parse(json);
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JsonObject jObject = jElement.getAsJsonObject();
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JsonObject jObject = jElement.getAsJsonObject();
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return generatePublicationActionsFromDump(jObject);
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return generatePublicationActionsFromDump(jObject);
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} catch (Throwable t) {
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logger.error("creating publication: " + t.getMessage());
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if (errorsGeneric != null) {
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errorsGeneric.add(1);
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}
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return null;
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}
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}
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}
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public Oaf generatePublicationActionsFromDump(final JsonObject rootElement) {
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public Oaf generatePublicationActionsFromDump(final JsonObject rootElement) {
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@ -217,6 +209,13 @@ public class PublicationToOaf implements Serializable {
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if (StringUtils.isNotBlank(type)) {
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if (StringUtils.isNotBlank(type)) {
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publication.setResourcetype(mapQualifier(type, type, "dnet:dataCite_resource", "dnet:dataCite_resource"));
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publication.setResourcetype(mapQualifier(type, type, "dnet:dataCite_resource", "dnet:dataCite_resource"));
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Map<String, String> publicationType = typologiesMapping.get(type);
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if ((publicationType == null || publicationType.isEmpty()) && errorsInvalidType != null) {
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errorsInvalidType.add(1);
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logger.error("publication_type_not_found: " + type);
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return null;
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}
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final String typeValue = typologiesMapping.get(type).get("value");
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final String typeValue = typologiesMapping.get(type).get("value");
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cobjValue = typologiesMapping.get(type).get("cobj");
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cobjValue = typologiesMapping.get(type).get("cobj");
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final Instance instance = new Instance();
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final Instance instance = new Instance();
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@ -259,12 +258,18 @@ public class PublicationToOaf implements Serializable {
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final List<Author> authors = createAuthors(rootElement);
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final List<Author> authors = createAuthors(rootElement);
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if (authors != null && authors.size() > 0) {
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if (authors != null && authors.size() > 0) {
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publication.setAuthor(authors);
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publication.setAuthor(authors);
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} else {
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if (authors == null) {
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Gson gson = new GsonBuilder().setPrettyPrinting().create();
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String json = gson.toJson(rootElement);
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throw new RuntimeException("not_valid_authors: " + json);
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} else {
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} else {
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if (errorsNotFoundAuthors != null) {
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if (errorsNotFoundAuthors != null) {
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errorsNotFoundAuthors.add(1);
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errorsNotFoundAuthors.add(1);
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}
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}
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return null;
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return null;
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}
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}
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}
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String classValue = getDefaultResulttype(cobjValue);
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String classValue = getDefaultResulttype(cobjValue);
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publication
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publication
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.setResulttype(mapQualifier(classValue, classValue, "dnet:result_typologies", "dnet:result_typologies"));
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.setResulttype(mapQualifier(classValue, classValue, "dnet:result_typologies", "dnet:result_typologies"));
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@ -1,19 +1,9 @@
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{
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{
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"reference-entry": {"cobj":"0013", "value": "Part of book or chapter of book"},
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"report": {"cobj":"0017", "value": "Report"},
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"report": {"cobj":"0017", "value": "Report"},
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"dataset": {"cobj":"0021", "value": "Dataset"},
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"journal-article": {"cobj":"0001", "value": "Article"},
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"journal-article": {"cobj":"0001", "value": "Article"},
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"reference-book": {"cobj":"0002", "value": "Book"},
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"other": {"cobj":"0020", "value": "Other ORP type"},
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"other": {"cobj":"0020", "value": "Other ORP type"},
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"proceedings-article": {"cobj":"0004", "value": "Conference object"},
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"standard": {"cobj":"0038", "value": "Other literature type"},
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"book-part": {"cobj":"0002", "value": "Book"},
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"monograph": {"cobj":"0002", "value": "Book"},
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"report-series": {"cobj":"0017", "value": "Report"},
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"book": {"cobj":"0002", "value": "Book"},
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"book": {"cobj":"0002", "value": "Book"},
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"book-chapter": {"cobj":"0013", "value": "Part of book or chapter of book"},
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"book-chapter": {"cobj":"0013", "value": "Part of book or chapter of book"},
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"peer-review": {"cobj":"0015", "value": "Review"},
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"book-section": {"cobj":"0013", "value": "Part of book or chapter of book"},
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"book-review": {"cobj":"0015", "value": "Review"},
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"book-review": {"cobj":"0015", "value": "Review"},
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"conference-abstract": {"cobj":"0004", "value": "Conference object"},
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"conference-abstract": {"cobj":"0004", "value": "Conference object"},
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"conference-paper": {"cobj":"0004", "value": "Conference object"},
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"conference-paper": {"cobj":"0004", "value": "Conference object"},
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@ -21,7 +11,7 @@
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"data-set": {"cobj":"0021", "value": "Dataset"},
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"data-set": {"cobj":"0021", "value": "Dataset"},
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"dictionary-entry": {"cobj":"0038", "value": "Other literature type"},
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"dictionary-entry": {"cobj":"0038", "value": "Other literature type"},
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"disclosure": {"cobj":"0038", "value": "Other literature type"},
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"disclosure": {"cobj":"0038", "value": "Other literature type"},
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"dissertation": {"cobj":"0006", "value": "Doctoral thesis"},
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"dissertation-thesis": {"cobj":"0006", "value": "Doctoral thesis"},
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"edited-book": {"cobj":"0002", "value": "Book"},
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"edited-book": {"cobj":"0002", "value": "Book"},
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"encyclopedia-entry": {"cobj":"0038", "value": "Other literature type"},
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"encyclopedia-entry": {"cobj":"0038", "value": "Other literature type"},
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"lecture-speech": {"cobj":"0010", "value": "Lecture"},
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"lecture-speech": {"cobj":"0010", "value": "Lecture"},
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@ -37,5 +27,9 @@
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"supervised-student-publication": {"cobj":"0001", "value": "Article"},
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"supervised-student-publication": {"cobj":"0001", "value": "Article"},
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"technical-standard": {"cobj":"0038", "value": "Other literature type"},
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"technical-standard": {"cobj":"0038", "value": "Other literature type"},
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"website": {"cobj":"0020", "value": "Other ORP type"},
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"website": {"cobj":"0020", "value": "Other ORP type"},
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"working-paper": {"cobj":"0014", "value": "Research"}
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"working-paper": {"cobj":"0014", "value": "Research"},
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"annotation": {"cobj":"0018", "value": "Annotation"},
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"physical-object": {"cobj":"0028", "value": "PhysicalObject"},
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"preprint": {"cobj":"0016", "value": "Preprint"},
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"software": {"cobj":"0029", "value": "Software"}
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}
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}
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