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master #59

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claudio.atzori wants to merge 3221 commits from master into stable_ids
pull from: master
merge into: D-Net:stable_ids
Conversation 0 Commits 3221 Files Changed 2141 +17 -11
4 changed files with 17 additions and 11 deletions
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Showing only changes of commit 954a16c213 - Show all commits

15
dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/PropagationConstant.java
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@ -68,27 +68,28 @@ public class PropagationConstant {
getDataInfo( getDataInfo(
PROPAGATION_DATA_INFO_TYPE, PROPAGATION_DATA_INFO_TYPE,
PROPAGATION_COUNTRY_INSTREPO_CLASS_ID, PROPAGATION_COUNTRY_INSTREPO_CLASS_ID,
PROPAGATION_COUNTRY_INSTREPO_CLASS_NAME)); PROPAGATION_COUNTRY_INSTREPO_CLASS_NAME,
ModelConstants.DNET_PROVENANCE_ACTIONS));
return nc; return nc;
} }
public static DataInfo getDataInfo( public static DataInfo getDataInfo(
String inference_provenance, String inference_class_id, String inference_class_name) { String inference_provenance, String inference_class_id, String inference_class_name, String qualifierSchema) {
DataInfo di = new DataInfo(); DataInfo di = new DataInfo();
di.setInferred(true); di.setInferred(true);
di.setDeletedbyinference(false); di.setDeletedbyinference(false);
di.setTrust("0.85"); di.setTrust("0.85");
di.setInferenceprovenance(inference_provenance); di.setInferenceprovenance(inference_provenance);
di.setProvenanceaction(getQualifier(inference_class_id, inference_class_name)); di.setProvenanceaction(getQualifier(inference_class_id, inference_class_name, qualifierSchema));
return di; return di;
} }
public static Qualifier getQualifier(String inference_class_id, String inference_class_name) { public static Qualifier getQualifier(String inference_class_id, String inference_class_name, String qualifierSchema) {
Qualifier pa = new Qualifier(); Qualifier pa = new Qualifier();
pa.setClassid(inference_class_id); pa.setClassid(inference_class_id);
pa.setClassname(inference_class_name); pa.setClassname(inference_class_name);
pa.setSchemeid(ModelConstants.DNET_PID_TYPES); pa.setSchemeid(qualifierSchema);
pa.setSchemename(ModelConstants.DNET_PID_TYPES); pa.setSchemename(qualifierSchema);
return pa; return pa;
} }
@ -107,7 +108,7 @@ public class PropagationConstant {
r.setRelClass(rel_class); r.setRelClass(rel_class);
r.setRelType(rel_type); r.setRelType(rel_type);
r.setSubRelType(subrel_type); r.setSubRelType(subrel_type);
r.setDataInfo(getDataInfo(inference_provenance, inference_class_id, inference_class_name)); r.setDataInfo(getDataInfo(inference_provenance, inference_class_id, inference_class_name, ModelConstants.DNET_PROVENANCE_ACTIONS));
return r; return r;
} }

5
dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/orcidtoresultfromsemrel/SparkOrcidToResultFromSemRelJob.java
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@ -173,13 +173,14 @@ public class SparkOrcidToResultFromSemRelJob {
if (toaddpid) { if (toaddpid) {
StructuredProperty p = new StructuredProperty(); StructuredProperty p = new StructuredProperty();
p.setValue(autoritative_author.getOrcid()); p.setValue(autoritative_author.getOrcid());
p.setQualifier(getQualifier(ModelConstants.ORCID_PENDING, ModelConstants.ORCID_CLASSNAME)); p.setQualifier(getQualifier(ModelConstants.ORCID_PENDING, ModelConstants.ORCID_CLASSNAME, ModelConstants.DNET_PID_TYPES));
p p
.setDataInfo( .setDataInfo(
getDataInfo( getDataInfo(
PROPAGATION_DATA_INFO_TYPE, PROPAGATION_DATA_INFO_TYPE,
PROPAGATION_ORCID_TO_RESULT_FROM_SEM_REL_CLASS_ID, PROPAGATION_ORCID_TO_RESULT_FROM_SEM_REL_CLASS_ID,
PROPAGATION_ORCID_TO_RESULT_FROM_SEM_REL_CLASS_NAME)); PROPAGATION_ORCID_TO_RESULT_FROM_SEM_REL_CLASS_NAME,
ModelConstants.DNET_PROVENANCE_ACTIONS));
Optional<List<StructuredProperty>> authorPid = Optional.ofNullable(author.getPid()); Optional<List<StructuredProperty>> authorPid = Optional.ofNullable(author.getPid());
if (authorPid.isPresent()) { if (authorPid.isPresent()) {

4
dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromorganization/SparkResultToCommunityFromOrganizationJob.java
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@ -10,6 +10,7 @@ import java.util.List;
import java.util.Optional; import java.util.Optional;
import java.util.stream.Collectors; import java.util.stream.Collectors;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import org.apache.commons.io.IOUtils; import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf; import org.apache.spark.SparkConf;
import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.api.java.function.MapFunction;
@ -128,7 +129,8 @@ public class SparkResultToCommunityFromOrganizationJob {
getDataInfo( getDataInfo(
PROPAGATION_DATA_INFO_TYPE, PROPAGATION_DATA_INFO_TYPE,
PROPAGATION_RESULT_COMMUNITY_ORGANIZATION_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_ORGANIZATION_CLASS_ID,
PROPAGATION_RESULT_COMMUNITY_ORGANIZATION_CLASS_NAME))); PROPAGATION_RESULT_COMMUNITY_ORGANIZATION_CLASS_NAME,
ModelConstants.DNET_PROVENANCE_ACTIONS)));
propagatedContexts.add(newContext); propagatedContexts.add(newContext);
} }
} }

4
dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromsemrel/SparkResultToCommunityThroughSemRelJob.java
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@ -7,6 +7,7 @@ import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
import java.util.*; import java.util.*;
import java.util.stream.Collectors; import java.util.stream.Collectors;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import org.apache.commons.io.IOUtils; import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf; import org.apache.spark.SparkConf;
import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.api.java.function.MapFunction;
@ -124,7 +125,8 @@ public class SparkResultToCommunityThroughSemRelJob {
getDataInfo( getDataInfo(
PROPAGATION_DATA_INFO_TYPE, PROPAGATION_DATA_INFO_TYPE,
PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID,
PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME))); PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME,
ModelConstants.DNET_PROVENANCE_ACTIONS)));
return newContext; return newContext;
} }
return null; return null;