master #59
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@ -3,20 +3,23 @@ package eu.dnetlib.dhp.actionmanager;
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import java.io.Serializable;
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import java.io.Serializable;
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import java.io.StringReader;
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import java.io.StringReader;
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import java.util.ArrayList;
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import java.util.*;
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import java.util.List;
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import java.util.NoSuchElementException;
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import java.util.stream.Collectors;
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import java.util.stream.Collectors;
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import org.apache.commons.lang3.tuple.Triple;
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import org.dom4j.Document;
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import org.dom4j.Document;
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import org.dom4j.DocumentException;
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import org.dom4j.Element;
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import org.dom4j.Element;
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import org.dom4j.io.SAXReader;
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import org.dom4j.io.SAXReader;
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import org.jetbrains.annotations.NotNull;
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import org.slf4j.Logger;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import org.slf4j.LoggerFactory;
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import com.google.common.base.Joiner;
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import com.google.common.base.Splitter;
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import com.google.common.base.Splitter;
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import com.google.common.collect.Iterables;
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import com.google.common.collect.Iterables;
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import com.google.common.collect.Lists;
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import com.google.common.collect.Lists;
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import com.google.common.collect.Sets;
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import eu.dnetlib.actionmanager.rmi.ActionManagerException;
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import eu.dnetlib.actionmanager.rmi.ActionManagerException;
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import eu.dnetlib.actionmanager.set.ActionManagerSet;
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import eu.dnetlib.actionmanager.set.ActionManagerSet;
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@ -25,6 +28,7 @@ import eu.dnetlib.dhp.actionmanager.partition.PartitionActionSetsByPayloadTypeJo
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import eu.dnetlib.dhp.utils.ISLookupClientFactory;
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import eu.dnetlib.dhp.utils.ISLookupClientFactory;
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import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
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import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
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import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
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import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
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import scala.Tuple2;
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public class ISClient implements Serializable {
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public class ISClient implements Serializable {
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@ -40,78 +44,50 @@ public class ISClient implements Serializable {
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public List<String> getLatestRawsetPaths(String setIds) {
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public List<String> getLatestRawsetPaths(String setIds) {
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List<String> ids = Lists
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final Set<String> ids = Sets
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.newArrayList(
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.newHashSet(
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Splitter
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Splitter
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.on(INPUT_ACTION_SET_ID_SEPARATOR)
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.on(INPUT_ACTION_SET_ID_SEPARATOR)
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.omitEmptyStrings()
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.omitEmptyStrings()
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.trimResults()
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.trimResults()
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.split(setIds));
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.split(setIds));
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return ids
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.stream()
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.map(id -> getSet(isLookup, id))
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.map(as -> as.getPathToLatest())
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.collect(Collectors.toCollection(ArrayList::new));
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}
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private ActionManagerSet getSet(ISLookUpService isLookup, final String setId) {
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final String q = "for $x in collection('/db/DRIVER/ActionManagerSetDSResources/ActionManagerSetDSResourceType') "
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+ "where $x//SET/@id = '"
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+ setId
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+ "' return $x";
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try {
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try {
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final String basePath = getBasePathHDFS(isLookup);
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final String basePath = getBasePathHDFS(isLookup);
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final String setProfile = isLookup.getResourceProfileByQuery(q);
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return getActionManagerSet(basePath, setProfile);
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// <SET id="..." directory="..." latest="xxx"/>
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} catch (ISLookUpException | ActionManagerException e) {
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final String xquery = "for $x in collection('/db/DRIVER/ActionManagerSetDSResources/ActionManagerSetDSResourceType') "
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throw new RuntimeException("Error accessing Sets, using query: " + q);
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+
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"return <SET id='{$x//SET/@id/string()}' directory='{$x//SET/@directory/string()}' latest='{$x//LATEST/@id/string()}'/>";
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return Optional
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.ofNullable(isLookup.quickSearchProfile(xquery))
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.map(
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sets -> sets
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.stream()
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.map(set -> parseSetInfo(set))
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.filter(t -> ids.contains(t.getLeft()))
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.map(t -> buildDirectory(basePath, t))
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.collect(Collectors.toList()))
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.orElseThrow(() -> new IllegalStateException("empty set list"));
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} catch (ActionManagerException | ISLookUpException e) {
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throw new IllegalStateException("unable to query ActionSets info from the IS");
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}
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}
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}
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}
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private ActionManagerSet getActionManagerSet(final String basePath, final String profile)
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private Triple<String, String, String> parseSetInfo(String set) {
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throws ActionManagerException {
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final SAXReader reader = new SAXReader();
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final ActionManagerSet set = new ActionManagerSet();
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try {
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try {
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final Document doc = reader.read(new StringReader(profile));
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Document doc = new SAXReader().read(new StringReader(set));
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return Triple
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set.setId(doc.valueOf("//SET/@id").trim());
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.of(
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set.setName(doc.valueOf("//SET").trim());
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doc.valueOf("//SET/@id"),
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set.setImpact(ImpactTypes.valueOf(doc.valueOf("//IMPACT").trim()));
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doc.valueOf("//SET/@directory"),
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set
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doc.valueOf("//SET/@latest"));
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.setLatest(
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} catch (DocumentException e) {
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doc.valueOf("//RAW_SETS/LATEST/@id"),
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throw new IllegalStateException(e);
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doc.valueOf("//RAW_SETS/LATEST/@creationDate"),
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doc.valueOf("//RAW_SETS/LATEST/@lastUpdate"));
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set.setDirectory(doc.valueOf("//SET/@directory"));
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final List expiredNodes = doc.selectNodes("//RAW_SETS/EXPIRED");
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if (expiredNodes != null) {
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for (int i = 0; i < expiredNodes.size(); i++) {
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Element ex = (Element) expiredNodes.get(i);
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set
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.addExpired(
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ex.attributeValue("id"),
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ex.attributeValue("creationDate"),
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ex.attributeValue("lastUpdate"));
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}
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}
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}
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}
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final StringBuilder sb = new StringBuilder();
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private String buildDirectory(String basePath, Triple<String, String, String> t) {
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sb.append(basePath);
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return Joiner.on("/").join(basePath, t.getMiddle(), t.getRight());
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sb.append("/");
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sb.append(doc.valueOf("//SET/@directory"));
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sb.append("/");
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sb.append(doc.valueOf("//RAW_SETS/LATEST/@id"));
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set.setPathToLatest(sb.toString());
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return set;
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} catch (Exception e) {
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throw new ActionManagerException("Error creating set from profile: " + profile, e);
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}
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}
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}
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private String getBasePathHDFS(ISLookUpService isLookup) throws ActionManagerException {
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private String getBasePathHDFS(ISLookUpService isLookup) throws ActionManagerException {
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