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Irish oaipmh exporter #443

Merged
claudio.atzori merged 7 commits from irish-oaipmh-exporter into beta 2024-06-05 10:55:09 +02:00
Conversation 0 Commits 7 Files Changed 10 +344 -4
5 changed files with 344 additions and 4 deletions
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Showing only changes of commit 70bf6ac415 - Show all commits

11
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/oaipmh/IrishOaiExporterJob.java
View File

@ -98,7 +98,7 @@ public class IrishOaiExporterJob {
});
}
private static OaiRecordWrapper asIrishOaiResult(final String xml) {
protected static OaiRecordWrapper asIrishOaiResult(final String xml) {
try {
final Document doc = DocumentHelper.parseText(xml);
final OaiRecordWrapper r = new OaiRecordWrapper();
@ -116,21 +116,24 @@ public class IrishOaiExporterJob {
}
}
private static boolean isValid(final Document doc) {
protected static boolean isValid(final Document doc) {
final Node n = doc.selectSingleNode("//*[local-name()='entity']/*[local-name()='result']");
if (n != null) {
for (final Object o : n.selectNodes(".//*[local-name()='datainfo']/*[local-name()='deletedbyinference']")) {
if ("true".equals(((Node) o).getText().trim())) { return false; }
}
// verify the main country of the result
for (final Object o : n.selectNodes("./*[local-name()='country']")) {
if ("IE".equals(((Node) o).valueOf("@classid").trim())) { return true; }
}
// verify the countries of the related organizations
for (final Object o : n.selectNodes(".//*[local-name()='rel']")) {
final String relType = ((Node) o).valueOf("./[local-name() = 'to']/@type").trim();
final String relType = ((Node) o).valueOf("./*[local-name() = 'to']/@type").trim();
final String relCountry = ((Node) o).valueOf("./*[local-name() = 'country']/@classid").trim();
if ("organization".equals(relType) && "IE".equals(relCountry)) { return true; }
}
@ -139,7 +142,7 @@ public class IrishOaiExporterJob {
}
private static byte[] gzip(final String str) {
protected static byte[] gzip(final String str) {
if (StringUtils.isBlank(str)) { return null; }
try {

93
dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/oaipmh/IrishOaiExporterJobTest.java Normal file
View File

@ -0,0 +1,93 @@
package eu.dnetlib.dhp.oa.oaipmh;
import static org.junit.Assert.assertNull;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertFalse;
import static org.junit.jupiter.api.Assertions.assertNotNull;
import static org.junit.jupiter.api.Assertions.assertTrue;
import java.io.BufferedReader;
import java.io.ByteArrayInputStream;
import java.io.IOException;
import java.io.InputStreamReader;
import java.util.zip.GZIPInputStream;
import org.apache.commons.io.IOUtils;
import org.dom4j.Document;
import org.dom4j.DocumentException;
import org.dom4j.io.SAXReader;
import org.junit.jupiter.api.Test;
class IrishOaiExporterJobTest {
@Test
void testAsIrishOaiResult() throws Exception {
final String xml = IOUtils.toString(getClass().getResourceAsStream("record_IE.xml"));
final OaiRecordWrapper res = IrishOaiExporterJob.asIrishOaiResult(xml);
assertNotNull(res.getId());
assertNotNull(res.getBody());
assertNotNull(res.getSets());
assertNotNull(res.getDate());
assertEquals("dedup_wf_002::532be02f990b479a1da46d71f1a4c3f0", res.getId());
assertTrue(res.getBody().length > 0);
assertTrue(res.getSets().isEmpty());
}
@Test
void testIsValid_IE() throws DocumentException {
final Document doc = new SAXReader().read(getClass().getResourceAsStream("record_IE.xml"));
assertTrue(IrishOaiExporterJob.isValid(doc));
}
@Test
void testIsValid_invalid_country() throws DocumentException {
final Document doc = new SAXReader().read(getClass().getResourceAsStream("record_IT.xml"));
assertFalse(IrishOaiExporterJob.isValid(doc));
}
@Test
void testIsValid_deleted() throws DocumentException {
final Document doc = new SAXReader().read(getClass().getResourceAsStream("record_IE_deleted.xml"));
assertFalse(IrishOaiExporterJob.isValid(doc));
}
@Test
void testGzip_simple() {
final String message = "<test />";
final byte[] bytes = IrishOaiExporterJob.gzip(message);
assertNotNull(bytes);
assertTrue(bytes.length > 0);
assertEquals(message, decompress(bytes));
}
@Test
void testGzip_empty() {
assertNull(IrishOaiExporterJob.gzip(""));
assertNull(IrishOaiExporterJob.gzip(null));
}
private static String decompress(final byte[] compressed) {
final StringBuilder outStr = new StringBuilder();
if ((compressed == null) || (compressed.length == 0)) { return null; }
try {
if (isCompressed(compressed)) {
final GZIPInputStream gis = new GZIPInputStream(new ByteArrayInputStream(compressed));
final BufferedReader bufferedReader = new BufferedReader(new InputStreamReader(gis, "UTF-8"));
String line;
while ((line = bufferedReader.readLine()) != null) {
outStr.append(line);
}
} else {
outStr.append(compressed);
}
return outStr.toString();
} catch (final IOException e) {
throw new RuntimeException("error in gunzip", e);
}
}
private static boolean isCompressed(final byte[] compressed) {
return (compressed[0] == (byte) GZIPInputStream.GZIP_MAGIC) && (compressed[1] == (byte) (GZIPInputStream.GZIP_MAGIC >> 8));
}
}

89
dhp-workflows/dhp-graph-provision/src/test/resources/eu/dnetlib/dhp/oa/oaipmh/record_IE.xml Normal file
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@ -0,0 +1,89 @@
<record rank="null">
<result>
<header>
<objIdentifier>dedup_wf_002::532be02f990b479a1da46d71f1a4c3f0</objIdentifier>
<dateOfCollection>2023-03-31T18:37:45.599Z</dateOfCollection>
<dateOfTransformation>2023-03-31T18:45:52.701Z</dateOfTransformation>
</header>
<metadata>
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89
dhp-workflows/dhp-graph-provision/src/test/resources/eu/dnetlib/dhp/oa/oaipmh/record_IE_deleted.xml Normal file
View File

@ -0,0 +1,89 @@
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66
dhp-workflows/dhp-graph-provision/src/test/resources/eu/dnetlib/dhp/oa/oaipmh/record_IT.xml Normal file
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@ -0,0 +1,66 @@
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