dhp-workflows/dhp-stats-monitor-irish/pom.xml

@@ -0,0 +1,32 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+    <parent>
+        <artifactId>dhp-workflows</artifactId>
+        <groupId>eu.dnetlib.dhp</groupId>
+        <version>1.2.4-SNAPSHOT</version>
+    </parent>
+    <modelVersion>4.0.0</modelVersion>
+    <artifactId>dhp-stats-monitor-irish</artifactId>
+    <dependencies>
+        <dependency>
+            <groupId>org.apache.spark</groupId>
+            <artifactId>spark-core_2.11</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.apache.spark</groupId>
+            <artifactId>spark-sql_2.11</artifactId>
+        </dependency>
+    </dependencies>
+	<build>
+		<plugins>
+			<plugin>
+				<groupId>pl.project13.maven</groupId>
+				<artifactId>git-commit-id-plugin</artifactId>
+                <version>2.1.11</version>
+				<configuration>
+					<failOnNoGitDirectory>false</failOnNoGitDirectory>
+				</configuration>
+			</plugin>
+		</plugins>
+	</build>
+</project>

dhp-workflows/dhp-stats-monitor-irish/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor-irish/oozie_app/config-default.xml

@@ -0,0 +1,30 @@
+<configuration>
+    <property>
+        <name>jobTracker</name>
+        <value>${jobTracker}</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>${nameNode}</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>oozie.action.sharelib.for.spark</name>
+        <value>spark2</value>
+    </property>
+    <property>
+        <name>hive_metastore_uris</name>
+        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
+    </property>
+    <property>
+        <name>hive_jdbc_url</name>
+        <value>jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000/;UseNativeQuery=1;?spark.executor.memory=22166291558;spark.yarn.executor.memoryOverhead=3225;spark.driver.memory=15596411699;spark.yarn.driver.memoryOverhead=1228</value>
+    </property>
+	<property>
+		<name>oozie.wf.workflow.notification.url</name>
+		<value>{serviceUrl}/v1/oozieNotification/jobUpdate?jobId=$jobId%26status=$status</value>
+	</property>
+</configuration>

dhp-workflows/dhp-stats-monitor-irish/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor-irish/oozie_app/copyDataToImpalaCluster.sh

@@ -0,0 +1,70 @@
+export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
+export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
+if ! [ -L $link_folder ]
+then
+    rm -Rf "$link_folder"
+    ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
+fi
+
+export HADOOP_USER_NAME=$2
+
+function copydb() {
+
+  db=$1
+  FILE=("hive_wf_tmp_"$RANDOM)
+  hdfs dfs -mkdir hdfs://impala-cluster-mn1.openaire.eu:8020/tmp/$FILE/
+
+  # change ownership to impala
+#  hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/$FILE/${db}.db
+  hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/$FILE/
+
+
+  # copy the databases from ocean to impala
+  echo "copying $db"
+  hadoop distcp -Dmapreduce.map.memory.mb=6144 -pb hdfs://nameservice1/user/hive/warehouse/${db}.db hdfs://impala-cluster-mn1.openaire.eu:8020/tmp/$FILE/
+
+  hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/$FILE/${db}.db
+
+  # drop tables from db
+  for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited  -q "show tables"`;
+    do
+        `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "drop table $i;"`;
+    done
+
+  # drop views from db
+  for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited  -q "show tables"`;
+    do
+        `impala-shell  -i impala-cluster-dn1.openaire.eu -d ${db} -q "drop view $i;"`;
+    done
+
+  # delete the database
+  impala-shell -i impala-cluster-dn1.openaire.eu -q "drop database if exists ${db} cascade";
+
+  # create the databases
+  impala-shell -i impala-cluster-dn1.openaire.eu -q "create database ${db}";
+
+  impala-shell -q "INVALIDATE METADATA"
+  echo "creating schema for ${db}"
+  for ((  k  = 0;  k  < 5;  k ++ )); do
+  for i in `impala-shell -d ${db} --delimited  -q "show tables"`;
+    do
+      impala-shell -d ${db} --delimited  -q "show create table $i";
+    done |  sed 's/"$/;/' | sed 's/^"//' | sed 's/[[:space:]]\date[[:space:]]/`date`/g' | impala-shell --user $HADOOP_USER_NAME -i impala-cluster-dn1.openaire.eu -c -f -
+  done
+
+  # load the data from /tmp in the respective tables
+  echo "copying data in tables and computing stats"
+  for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited  -q "show tables"`;
+      do
+        impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "load data inpath '/tmp/$FILE/${db}.db/$i' into table $i";
+        impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "compute stats $i";
+      done
+
+  # deleting the remaining directory from hdfs
+hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -rm -R /tmp/$FILE/${db}.db
+}
+
+MONITOR_DB=$1
+#HADOOP_USER_NAME=$2
+copydb $MONITOR_DB
+

dhp-workflows/dhp-stats-monitor-irish/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor-irish/oozie_app/finalizeImpalaCluster.sh

@@ -0,0 +1,23 @@
+export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
+export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
+if ! [ -L $link_folder ]
+then
+    rm -Rf "$link_folder"
+    ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
+fi
+
+SOURCE=$1
+PRODUCTION=$2
+echo ${SOURCE}
+echo ${PRODUCTION}
+
+#echo "Updating ${PRODUCTION} monitor database old cluster"
+#impala-shell -q "create database if not exists ${PRODUCTION}"
+#impala-shell -d ${PRODUCTION} -q "show tables" --delimited | sed "s/^/drop view if exists ${PRODUCTION}./" | sed "s/$/;/" | impala-shell -c -f -
+#impala-shell -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${PRODUCTION}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -c -f -
+
+echo "Updating ${PRODUCTION} monitor database"
+impala-shell -i impala-cluster-dn1.openaire.eu -q "create database if not exists ${PRODUCTION}"
+impala-shell -i impala-cluster-dn1.openaire.eu -d ${PRODUCTION} -q "show tables" --delimited | sed "s/^/drop view if exists ${PRODUCTION}./" | sed "s/$/;/" | impala-shell -i impala-cluster-dn1.openaire.eu -c -f -
+impala-shell -i impala-cluster-dn1.openaire.eu -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${PRODUCTION}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -i impala-cluster-dn1.openaire.eu -c -f -
+echo "Production monitor db ready!"

dhp-workflows/dhp-stats-monitor-irish/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor-irish/oozie_app/monitor_irish.sh

@@ -0,0 +1,28 @@
+export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
+export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
+if ! [ -L $link_folder ]
+then
+    rm -Rf "$link_folder"
+    ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
+fi
+
+export SOURCE=$1
+export TARGET=$2
+export SHADOW=$3
+export SCRIPT_PATH=$4
+export GRAPHDB=$5
+
+
+export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228"
+export HADOOP_USER_NAME="oozie"
+
+echo "Getting file from " $4
+hdfs dfs -copyToLocal $4
+
+#update Monitor DB IRISH
+#cat CreateDB.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2/g1" | sed "s/GRAPHDB/$3/g1" > foo
+cat buildIrishMonitorDB.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2/g1" | sed "s/GRAPHDB/$5/g1" > foo
+hive $HIVE_OPTS -f foo
+
+echo "Hive shell finished"
+

dhp-workflows/dhp-stats-monitor-irish/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor-irish/oozie_app/scripts/buildIrishMonitorDB.sql

@@ -0,0 +1,224 @@
+drop database if exists TARGET cascade;
+create database if not exists TARGET;
+
+create view if not exists TARGET.category as select * from SOURCE.category;
+create view if not exists TARGET.concept as select * from SOURCE.concept;
+create view if not exists TARGET.context as select * from SOURCE.context;
+create view if not exists TARGET.country as select * from SOURCE.country;
+create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp;
+create view if not exists TARGET.creation_date as select * from SOURCE.creation_date;
+--create view if not exists TARGET.funder as select * from SOURCE.funder;
+create view if not exists TARGET.fundref as select * from SOURCE.fundref;
+create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture;
+create view if not exists TARGET.rndgdpexpenditure as select * from SOURCE.rndgdpexpenditure;
+create view if not exists TARGET.doctoratestudents as select * from SOURCE.doctoratestudents;
+create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers;
+create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft;
+create view if not exists TARGET.hrrst as select * from SOURCE.hrrst;
+
+drop table if exists TARGET.irish_funders;
+
+create TEMPORARY table TARGET.irish_funders as
+select distinct xpath_string(fundingtree[0].value, '//funder/name') as funder from GRAPHDB.project
+                     where xpath_string(fundingtree[0].value, '//funder/jurisdiction')='IE';
+--create TEMPORARY table TARGET.irish_funders as
+--select distinct name as funder from SOURCE.fundref where country='IE';
+
+drop table if exists TARGET.result;
+
+create table TARGET.result stored as parquet as
+    select distinct * from SOURCE.result r where r.id in (select ro.id from SOURCE.result_organization ro
+                    left outer join SOURCE.organization o on o.id=ro.organization
+                    left outer join SOURCE.result_projects rp on rp.id=ro.id
+                    left outer join SOURCE.project p on p.id=rp.project
+                    join TARGET.irish_funders irf
+                    where o.country='IE' or p.funder=irf.funder);
+
+create view if not exists TARGET.category as select * from SOURCE.category;
+create view if not exists TARGET.concept as select * from SOURCE.concept;
+create view if not exists TARGET.context as select * from SOURCE.context;
+create view if not exists TARGET.country as select * from SOURCE.country;
+create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp;
+create view if not exists TARGET.creation_date as select * from SOURCE.creation_date;
+
+create table TARGET.funder stored as parquet as select * from SOURCE.funder where country='IE';
+
+create view if not exists TARGET.fundref as select * from SOURCE.fundref;
+create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture;
+create view if not exists TARGET.rndgdpexpenditure as select * from SOURCE.rndgdpexpenditure;
+create view if not exists TARGET.doctoratestudents as select * from SOURCE.doctoratestudents;
+create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers;
+create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft;
+create view if not exists TARGET.hrrst as select * from SOURCE.hrrst;
+--create view if not exists TARGET.graduatedoctorates as select * from SOURCE.graduatedoctorates;
+
+create table TARGET.result_citations stored as parquet as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_references_oc stored as parquet as select * from SOURCE.result_references_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_citations_oc stored as parquet as select * from SOURCE.result_citations_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_classifications stored as parquet as select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_apc stored as parquet as select * from SOURCE.result_apc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_concepts stored as parquet as select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_datasources stored as parquet as select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_fundercount stored as parquet as select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_gold stored as parquet as select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_greenoa stored as parquet as select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_languages stored as parquet as select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_licenses stored as parquet as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.licenses_normalized STORED AS PARQUET as select * from SOURCE.licenses_normalized;
+
+create table TARGET.result_oids stored as parquet as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_organization stored as parquet as select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_peerreviewed stored as parquet as select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_pids stored as parquet as select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_projectcount stored as parquet as select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_projects stored as parquet as select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_refereed stored as parquet as select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_sources stored as parquet as select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_topics stored as parquet as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_fos stored as parquet as select * from SOURCE.result_fos orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_accessroute stored as parquet as select * from SOURCE.result_accessroute orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_instance stored as parquet as select * from SOURCE.result_instance orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_orcid stored as parquet as select * from SOURCE.result_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create view TARGET.foo1 as select * from SOURCE.result_result rr where rr.source in (select id from TARGET.result);
+create view TARGET.foo2 as select * from SOURCE.result_result rr where rr.target in (select id from TARGET.result);
+create table TARGET.result_result STORED AS PARQUET as select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou;
+drop view TARGET.foo1;
+drop view TARGET.foo2;
+
+-- datasources
+create view if not exists TARGET.datasource as select * from SOURCE.datasource;
+create view if not exists TARGET.datasource_oids as select * from SOURCE.datasource_oids;
+create view if not exists TARGET.datasource_organizations as select * from SOURCE.datasource_organizations;
+create view if not exists TARGET.datasource_sources as select * from SOURCE.datasource_sources;
+
+create table TARGET.datasource_results stored as parquet as select id as result, datasource as id from TARGET.result_datasources;
+
+-- organizations
+create view if not exists TARGET.organization as select * from SOURCE.organization;
+create view if not exists TARGET.organization_datasources as select * from SOURCE.organization_datasources;
+create view if not exists TARGET.organization_pids as select * from SOURCE.organization_pids;
+create view if not exists TARGET.organization_projects as select * from SOURCE.organization_projects;
+create view if not exists TARGET.organization_sources as select * from SOURCE.organization_sources;
+
+-- projects
+create view if not exists TARGET.project as select * from SOURCE.project;
+create view if not exists TARGET.project_oids as select * from SOURCE.project_oids;
+create view if not exists TARGET.project_organizations as select * from SOURCE.project_organizations;
+create view if not exists TARGET.project_resultcount as select * from SOURCE.project_resultcount;
+create view if not exists TARGET.project_classification as select * from SOURCE.project_classification;
+create view if not exists TARGET.project_organization_contribution as select * from SOURCE.project_organization_contribution;
+
+create table TARGET.project_results stored as parquet as select id as result, project as id from TARGET.result_projects;
+
+
+-- indicators
+-- Sprint 1 ----
+create table TARGET.indi_pub_green_oa stored as parquet as select * from SOURCE.indi_pub_green_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_pub_grey_lit stored as parquet as select * from SOURCE.indi_pub_grey_lit orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_pub_doi_from_crossref stored as parquet as select * from SOURCE.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+-- Sprint 2 ----
+create table TARGET.indi_result_has_cc_licence stored as parquet as select * from SOURCE.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_result_has_cc_licence_url stored as parquet as select * from SOURCE.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_pub_has_abstract stored as parquet as select * from SOURCE.indi_pub_has_abstract orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_result_with_orcid stored as parquet as select * from SOURCE.indi_result_with_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+---- Sprint 3 ----
+create table TARGET.indi_funded_result_with_fundref stored as parquet as select * from SOURCE.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create view TARGET.indi_result_org_collab as select * from SOURCE.indi_result_org_collab;
+create view TARGET.indi_result_org_country_collab as select * from SOURCE.indi_result_org_country_collab;
+create view TARGET.indi_project_collab_org as select * from SOURCE.indi_project_collab_org;
+create view TARGET.indi_project_collab_org_country as select * from SOURCE.indi_project_collab_org_country;
+create view TARGET.indi_funder_country_collab as select * from SOURCE.indi_funder_country_collab;
+create view TARGET.indi_result_country_collab as select * from SOURCE.indi_result_country_collab;
+---- Sprint 4 ----
+create table TARGET.indi_pub_diamond stored as parquet as select * from SOURCE.indi_pub_diamond orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_pub_in_transformative stored as parquet as select * from SOURCE.indi_pub_in_transformative orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_pub_closed_other_open stored as parquet as select * from SOURCE.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+---- Sprint 5 ----
+create table TARGET.indi_result_no_of_copies stored as parquet as select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+---- Sprint 6 ----
+create table TARGET.indi_pub_hybrid_oa_with_cc stored as parquet as select * from SOURCE.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_pub_bronze_oa stored as parquet as select * from SOURCE.indi_pub_bronze_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_pub_downloads stored as parquet as select * from SOURCE.indi_pub_downloads orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
+
+create table TARGET.indi_pub_downloads_datasource stored as parquet as select * from SOURCE.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
+
+create table TARGET.indi_pub_downloads_year stored as parquet as select * from SOURCE.indi_pub_downloads_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
+
+create table TARGET.indi_pub_downloads_datasource_year stored as parquet as select * from SOURCE.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
+
+---- Sprint 7 ----
+create table TARGET.indi_pub_gold_oa stored as parquet as select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_pub_hybrid stored as parquet as select * from SOURCE.indi_pub_hybrid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create view TARGET.indi_org_fairness as select * from SOURCE.indi_org_fairness;
+create view TARGET.indi_org_fairness_pub_pr as select * from SOURCE.indi_org_fairness_pub_pr;
+create view TARGET.indi_org_fairness_pub_year as select * from SOURCE.indi_org_fairness_pub_year;
+create view TARGET.indi_org_fairness_pub as select * from SOURCE.indi_org_fairness_pub;
+create view TARGET.indi_org_fairness_year as select * from SOURCE.indi_org_fairness_year;
+create view TARGET.indi_org_findable_year as select * from SOURCE.indi_org_findable_year;
+create view TARGET.indi_org_findable as select * from SOURCE.indi_org_findable;
+create view TARGET.indi_org_openess as select * from SOURCE.indi_org_openess;
+create view TARGET.indi_org_openess_year as select * from SOURCE.indi_org_openess_year;
+create table TARGET.indi_pub_has_preprint stored as parquet as select * from SOURCE.indi_pub_has_preprint orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_pub_in_subscribed stored as parquet as select * from SOURCE.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_result_with_pid stored as parquet as select * from SOURCE.indi_result_with_pid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_impact_measures stored as parquet as select * from SOURCE.indi_impact_measures orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_pub_interdisciplinarity stored as parquet as select * from SOURCE.indi_pub_interdisciplinarity orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.result_apc_affiliations stored as parquet as select * from SOURCE.result_apc_affiliations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+
+create table TARGET.indi_is_project_result_after stored as parquet as select * from SOURCE.indi_is_project_result_after orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
+create view TARGET.indi_is_funder_plan_s as select * from SOURCE.indi_is_funder_plan_s;
+create view TARGET.indi_funder_fairness as select * from SOURCE.indi_funder_fairness;
+create view TARGET.indi_funder_openess as select * from SOURCE.indi_funder_openess;
+create view TARGET.indi_funder_findable as select * from SOURCE.indi_funder_findable;
+create view TARGET.indi_ris_fairness as select * from SOURCE.indi_ris_fairness;
+create view TARGET.indi_ris_openess as select * from SOURCE.indi_ris_openess;
+create view TARGET.indi_ris_findable as select * from SOURCE.indi_ris_findable;
+create table TARGET.indi_pub_green_with_license stored as parquet as select * from SOURCE.indi_pub_green_with_license orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+create table TARGET.result_country stored as parquet as select * from SOURCE.result_country orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+create table TARGET.indi_pub_publicly_funded stored as parquet as select * from SOURCE.indi_pub_publicly_funded orig where exists (select 1 from TARGET.result r where r.id=orig.id);

dhp-workflows/dhp-stats-monitor-irish/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor-irish/oozie_app/workflow.xml

@@ -0,0 +1,118 @@
+<workflow-app name="Irish Monitor Update" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>stats_db_name</name>
+            <description>the target stats database name</description>
+        </property>
+        <property>
+            <name>graph_db_name</name>
+            <description>the graph database name</description>
+        </property>
+        <property>
+            <name>monitor_irish_db_name</name>
+            <description>the target monitor db name</description>
+        </property>
+        <property>
+            <name>monitor_irish_db_prod_name</name>
+            <description>the name of the production monitor db</description>
+        </property>
+        <property>
+            <name>monitor_irish_db_shadow_name</name>
+            <description>the name of the shadow monitor db</description>
+        </property>
+        <property>
+            <name>hive_metastore_uris</name>
+            <description>hive server metastore URIs</description>
+        </property>
+        <property>
+            <name>hive_jdbc_url</name>
+            <description>hive server jdbc url</description>
+        </property>
+        <property>
+            <name>hive_timeout</name>
+            <description>the time period, in seconds, after which Hive fails a transaction if a Hive client has not sent a hearbeat. The default value is 300 seconds.</description>
+        </property>
+        <property>
+            <name>hadoop_user_name</name>
+            <description>user name of the wf owner</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>hive.metastore.uris</name>
+                <value>${hive_metastore_uris}</value>
+            </property>
+            <property>
+            	<name>hive.txn.timeout</name>
+            	<value>${hive_timeout}</value>
+            </property>
+	<property>
+	    <name>mapred.job.queue.name</name>
+	    <value>analytics</value>
+	</property>
+        </configuration>
+    </global>
+
+    <start to="resume_from"/>
+    <decision name="resume_from">
+        <switch>
+            <case to="Step1-buildIrishMonitorDB">${wf:conf('resumeFrom') eq 'Step1-buildIrishMonitorDB'}</case>
+            <case to="Step2-copyDataToImpalaCluster">${wf:conf('resumeFrom') eq 'Step2-copyDataToImpalaCluster'}</case>
+            <case to="Step3-finalizeImpalaCluster">${wf:conf('resumeFrom') eq 'Step3-finalizeImpalaCluster'}</case>
+            <default to="Step1-buildIrishMonitorDB"/>
+        </switch>
+    </decision>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <action name="Step1-buildIrishMonitorDB">
+        <shell xmlns="uri:oozie:shell-action:0.1">
+            <job-tracker>${jobTracker}</job-tracker>
+            <name-node>${nameNode}</name-node>
+            <exec>monitor_irish.sh</exec>
+            <argument>${stats_db_name}</argument>
+            <argument>${monitor_irish_db_name}</argument>
+            <argument>${monitor_irish_db_shadow_name}</argument>
+            <argument>${wf:appPath()}/scripts/buildIrishMonitorDB.sql</argument>
+            <argument>${graph_db_name}</argument>
+            <file>monitor_irish.sh</file>
+        </shell>
+        <ok to="Step2-copyDataToImpalaCluster"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="Step2-copyDataToImpalaCluster">
+        <shell xmlns="uri:oozie:shell-action:0.1">
+            <job-tracker>${jobTracker}</job-tracker>
+            <name-node>${nameNode}</name-node>
+            <exec>copyDataToImpalaCluster.sh</exec>
+            <argument>${monitor_irish_db_name}</argument>
+            <argument>${hadoop_user_name}</argument>
+            <file>copyDataToImpalaCluster.sh</file>
+        </shell>
+        <ok to="Step3-finalizeImpalaCluster"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="Step3-finalizeImpalaCluster">
+        <shell xmlns="uri:oozie:shell-action:0.1">
+            <job-tracker>${jobTracker}</job-tracker>
+            <name-node>${nameNode}</name-node>
+            <exec>finalizeImpalaCluster.sh</exec>
+            <argument>${monitor_irish_db_name}</argument>
+            <argument>${monitor_irish_db_prod_name}</argument>
+            <argument>${monitor_irish_db_shadow_name}</argument>
+            <file>finalizeImpalaCluster.sh</file>
+        </shell>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>