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enrichment_wfs #39

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claudio.atzori merged 9 commits from enrichment_wfs into master 2020-08-11 17:26:14 +02:00
Conversation 0 Commits 9 Files Changed 5 +345 -141
25 changed files with 345 additions and 141 deletions
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4
dhp-workflows/dhp-broker-events/pom.xml
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@ -57,9 +57,9 @@
</dependency>
<dependency>
<groupId>eu.dnetlib</groupId>
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dnet-openaire-broker-common</artifactId>
<version>[3.0.4,4.0.0)</version>
<version>[3.0.0-SNAPSHOT,)</version>
</dependency>
</dependencies>

112
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/CheckDuplictedIdsJob.java Normal file
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@ -0,0 +1,112 @@
package eu.dnetlib.dhp.broker.oa;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.sql.Encoder;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SaveMode;
import org.apache.spark.sql.SparkSession;
import org.apache.spark.sql.TypedColumn;
import org.apache.spark.sql.expressions.Aggregator;
import org.apache.spark.util.LongAccumulator;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.broker.model.Event;
import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
import scala.Tuple2;
public class CheckDuplictedIdsJob {
private static final Logger log = LoggerFactory.getLogger(CheckDuplictedIdsJob.class);
public static void main(final String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(
CheckDuplictedIdsJob.class
.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json")));
parser.parseArgument(args);
final SparkConf conf = new SparkConf();
final String eventsPath = parser.get("workingPath") + "/events";
log.info("eventsPath: {}", eventsPath);
final String countPath = parser.get("workingPath") + "/counts";
log.info("countPath: {}", countPath);
final SparkSession spark = SparkSession.builder().config(conf).getOrCreate();
final LongAccumulator total = spark.sparkContext().longAccumulator("invaild_event_id");
final TypedColumn<Tuple2<String, Long>, Tuple2<String, Long>> agg = new CountAggregator().toColumn();
ClusterUtils
.readPath(spark, eventsPath, Event.class)
.map(e -> new Tuple2<>(e.getEventId(), 1l), Encoders.tuple(Encoders.STRING(), Encoders.LONG()))
.groupByKey(t -> t._1, Encoders.STRING())
.agg(agg)
.map(t -> t._2, Encoders.tuple(Encoders.STRING(), Encoders.LONG()))
.filter(t -> t._2 > 1)
.map(o -> ClusterUtils.incrementAccumulator(o, total), Encoders.tuple(Encoders.STRING(), Encoders.LONG()))
.write()
.mode(SaveMode.Overwrite)
.json(countPath);
;
}
private static String eventAsJsonString(final Event f) throws JsonProcessingException {
return new ObjectMapper().writeValueAsString(f);
}
}
class CountAggregator extends Aggregator<Tuple2<String, Long>, Tuple2<String, Long>, Tuple2<String, Long>> {
/**
*
*/
private static final long serialVersionUID = 1395935985734672538L;
@Override
public Encoder<Tuple2<String, Long>> bufferEncoder() {
return Encoders.tuple(Encoders.STRING(), Encoders.LONG());
}
@Override
public Tuple2<String, Long> finish(final Tuple2<String, Long> arg0) {
return arg0;
}
@Override
public Tuple2<String, Long> merge(final Tuple2<String, Long> arg0, final Tuple2<String, Long> arg1) {
final String s = StringUtils.defaultIfBlank(arg0._1, arg1._1);
return new Tuple2<>(s, arg0._2 + arg1._2);
}
@Override
public Encoder<Tuple2<String, Long>> outputEncoder() {
return Encoders.tuple(Encoders.STRING(), Encoders.LONG());
}
@Override
public Tuple2<String, Long> reduce(final Tuple2<String, Long> arg0, final Tuple2<String, Long> arg1) {
final String s = StringUtils.defaultIfBlank(arg0._1, arg1._1);
return new Tuple2<>(s, arg0._2 + arg1._2);
}
@Override
public Tuple2<String, Long> zero() {
return new Tuple2<>(null, 0l);
}
}

24
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/GenerateEventsJob.java
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@ -3,8 +3,6 @@ package eu.dnetlib.dhp.broker.oa;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import java.util.Arrays;
import java.util.HashSet;
import java.util.Map;
import java.util.Optional;
import java.util.Set;
@ -63,13 +61,13 @@ public class GenerateEventsJob {
final String eventsPath = workingPath + "/events";
log.info("eventsPath: {}", eventsPath);
final Set<String> dsIdWhitelist = parseParamAsList(parser, "datasourceIdWhitelist");
final Set<String> dsIdWhitelist = ClusterUtils.parseParamAsList(parser, "datasourceIdWhitelist");
log.info("datasourceIdWhitelist: {}", StringUtils.join(dsIdWhitelist, ","));
final Set<String> dsTypeWhitelist = parseParamAsList(parser, "datasourceTypeWhitelist");
final Set<String> dsTypeWhitelist = ClusterUtils.parseParamAsList(parser, "datasourceTypeWhitelist");
log.info("datasourceTypeWhitelist: {}", StringUtils.join(dsTypeWhitelist, ","));
final Set<String> dsIdBlacklist = parseParamAsList(parser, "datasourceIdBlacklist");
final Set<String> dsIdBlacklist = ClusterUtils.parseParamAsList(parser, "datasourceIdBlacklist");
log.info("datasourceIdBlacklist: {}", StringUtils.join(dsIdBlacklist, ","));
final SparkConf conf = new SparkConf();
@ -103,22 +101,6 @@ public class GenerateEventsJob {
}
private static Set<String> parseParamAsList(final ArgumentApplicationParser parser, final String key) {
final String s = parser.get(key).trim();
final Set<String> res = new HashSet<>();
if (s.length() > 1) { // A value of a single char (for example: '-') indicates an empty list
Arrays
.stream(s.split(","))
.map(String::trim)
.filter(StringUtils::isNotBlank)
.forEach(res::add);
}
return res;
}
public static Map<String, LongAccumulator> prepareAccumulators(final SparkContext sc) {
return EventFinder

2
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/IndexOnESJob.java
View File

@ -48,7 +48,7 @@ public class IndexOnESJob {
final JavaRDD<String> inputRdd = ClusterUtils
.readPath(spark, eventsPath, Event.class)
.limit(10000) // TODO REMOVE
// .limit(10000) // TODO REMOVE
.map(IndexOnESJob::eventAsJsonString, Encoders.STRING())
.javaRDD();

4
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedProjects/EnrichMoreProject.java
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@ -25,7 +25,9 @@ public class EnrichMoreProject extends UpdateMatcher<OaBrokerProject> {
protected List<OaBrokerProject> findDifferences(final OaBrokerMainEntity source,
final OaBrokerMainEntity target) {
if (target.getProjects().size() >= BrokerConstants.MAX_LIST_SIZE) { return new ArrayList<>(); }
if (target.getProjects().size() >= BrokerConstants.MAX_LIST_SIZE) {
return new ArrayList<>();
}
final Set<String> existingProjects = target
.getProjects()

26
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/ClusterUtils.java
View File

@ -1,6 +1,11 @@
package eu.dnetlib.dhp.broker.oa.util;
import java.util.Arrays;
import java.util.HashSet;
import java.util.Set;
import org.apache.commons.lang3.StringUtils;
import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
@ -10,6 +15,7 @@ import org.apache.spark.util.LongAccumulator;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.HdfsSupport;
public class ClusterUtils {
@ -53,7 +59,9 @@ public class ClusterUtils {
return o;
}
public static <T> void save(final Dataset<T> dataset, final String path, final Class<T> clazz,
public static <T> void save(final Dataset<T> dataset,
final String path,
final Class<T> clazz,
final LongAccumulator acc) {
dataset
.map(o -> ClusterUtils.incrementAccumulator(o, acc), Encoders.bean(clazz))
@ -62,4 +70,20 @@ public class ClusterUtils {
.json(path);
}
public static Set<String> parseParamAsList(final ArgumentApplicationParser parser, final String key) {
final String s = parser.get(key).trim();
final Set<String> res = new HashSet<>();
if (s.length() > 1) { // A value of a single char (for example: '-') indicates an empty list
Arrays
.stream(s.split(","))
.map(String::trim)
.filter(StringUtils::isNotBlank)
.forEach(res::add);
}
return res;
}
}

55
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/ConversionUtils.java
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@ -44,7 +44,9 @@ public class ConversionUtils {
private static final Logger log = LoggerFactory.getLogger(ConversionUtils.class);
public static List<OaBrokerInstance> oafInstanceToBrokerInstances(final Instance i) {
if (i == null) { return new ArrayList<>(); }
if (i == null) {
return new ArrayList<>();
}
return mappedList(i.getUrl(), url -> {
final OaBrokerInstance res = new OaBrokerInstance();
@ -65,7 +67,9 @@ public class ConversionUtils {
}
public static final OaBrokerRelatedDataset oafDatasetToBrokerDataset(final Dataset d) {
if (d == null) { return null; }
if (d == null) {
return null;
}
final OaBrokerRelatedDataset res = new OaBrokerRelatedDataset();
res.setOpenaireId(d.getId());
@ -78,7 +82,9 @@ public class ConversionUtils {
}
public static OaBrokerRelatedPublication oafPublicationToBrokerPublication(final Publication p) {
if (p == null) { return null; }
if (p == null) {
return null;
}
final OaBrokerRelatedPublication res = new OaBrokerRelatedPublication();
res.setOpenaireId(p.getId());
@ -92,7 +98,9 @@ public class ConversionUtils {
}
public static final OaBrokerMainEntity oafResultToBrokerResult(final Result result) {
if (result == null) { return null; }
if (result == null) {
return null;
}
final OaBrokerMainEntity res = new OaBrokerMainEntity();
@ -109,7 +117,8 @@ public class ConversionUtils {
res.setEmbargoenddate(fieldValue(result.getEmbargoenddate()));
res.setContributor(fieldList(result.getContributor()));
res
.setJournal(result instanceof Publication ? oafJournalToBrokerJournal(((Publication) result).getJournal()) : null);
.setJournal(
result instanceof Publication ? oafJournalToBrokerJournal(((Publication) result).getJournal()) : null);
res.setCollectedFromId(mappedFirst(result.getCollectedfrom(), KeyValue::getKey));
res.setCollectedFromName(mappedFirst(result.getCollectedfrom(), KeyValue::getValue));
res.setPids(mappedList(result.getPid(), ConversionUtils::oafPidToBrokerPid));
@ -121,7 +130,9 @@ public class ConversionUtils {
}
private static OaBrokerAuthor oafAuthorToBrokerAuthor(final Author author) {
if (author == null) { return null; }
if (author == null) {
return null;
}
final String pids = author.getPid() != null ? author
.getPid()
@ -145,7 +156,9 @@ public class ConversionUtils {
}
private static OaBrokerJournal oafJournalToBrokerJournal(final Journal journal) {
if (journal == null) { return null; }
if (journal == null) {
return null;
}
final OaBrokerJournal res = new OaBrokerJournal();
res.setName(journal.getName());
@ -157,7 +170,9 @@ public class ConversionUtils {
}
private static OaBrokerExternalReference oafExtRefToBrokerExtRef(final ExternalReference ref) {
if (ref == null) { return null; }
if (ref == null) {
return null;
}
final OaBrokerExternalReference res = new OaBrokerExternalReference();
res.setRefidentifier(ref.getRefidentifier());
@ -168,7 +183,9 @@ public class ConversionUtils {
}
public static final OaBrokerProject oafProjectToBrokerProject(final Project p) {
if (p == null) { return null; }
if (p == null) {
return null;
}
final OaBrokerProject res = new OaBrokerProject();
res.setOpenaireId(p.getId());
@ -192,7 +209,9 @@ public class ConversionUtils {
}
public static final OaBrokerRelatedSoftware oafSoftwareToBrokerSoftware(final Software sw) {
if (sw == null) { return null; }
if (sw == null) {
return null;
}
final OaBrokerRelatedSoftware res = new OaBrokerRelatedSoftware();
res.setOpenaireId(sw.getId());
@ -255,7 +274,9 @@ public class ConversionUtils {
}
private static List<OaBrokerTypedValue> structPropTypedList(final List<StructuredProperty> list) {
if (list == null) { return new ArrayList<>(); }
if (list == null) {
return new ArrayList<>();
}
return list
.stream()
@ -265,7 +286,9 @@ public class ConversionUtils {
}
private static <F, T> List<T> mappedList(final List<F> list, final Function<F, T> func) {
if (list == null) { return new ArrayList<>(); }
if (list == null) {
return new ArrayList<>();
}
return list
.stream()
@ -276,7 +299,9 @@ public class ConversionUtils {
}
private static <F, T> List<T> flatMappedList(final List<F> list, final Function<F, List<T>> func) {
if (list == null) { return new ArrayList<>(); }
if (list == null) {
return new ArrayList<>();
}
return list
.stream()
@ -288,7 +313,9 @@ public class ConversionUtils {
}
private static <F, T> T mappedFirst(final List<F> list, final Function<F, T> func) {
if (list == null) { return null; }
if (list == null) {
return null;
}
return list
.stream()

1
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/EventFinder.java
View File

@ -70,7 +70,6 @@ public class EventFinder {
matchers.add(new EnrichMissingDatasetReferences());
matchers.add(new EnrichMissingDatasetIsSupplementedTo());
matchers.add(new EnrichMissingDatasetIsSupplementedBy());
matchers.add(new EnrichMissingAbstract());
}
public static EventGroup generateEvents(final ResultGroup results,

2
dhp-workflows/dhp-broker-events/src/main/resources/eu/dnetlib/dhp/broker/oa/generate_all/oozie_app/workflow.xml
View File

@ -447,7 +447,7 @@
<spark-opts>
--executor-memory=${sparkExecutorMemory}
--driver-memory=${sparkDriverMemory}
--conf spark.dynamicAllocation.maxExecutors="2"
--conf spark.dynamicAllocation.maxExecutors="8"
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}

13
dhp-workflows/dhp-broker-events/src/main/resources/eu/dnetlib/dhp/broker/oa/partial/oozie_app/workflow.xml
View File

@ -73,33 +73,32 @@
</configuration>
</global>
<start to="index_es"/>
<start to="count"/>
<kill name="Kill">
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
</kill>
<action name="index_es">
<action name="count">
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>IndexOnESJob</name>
<class>eu.dnetlib.dhp.broker.oa.IndexOnESJob</class>
<name>Count</name>
<class>eu.dnetlib.dhp.broker.oa.CheckDuplictedIdsJob</class>
<jar>dhp-broker-events-${projectVersion}.jar</jar>
<spark-opts>
--executor-cores=${sparkExecutorCores}
--executor-memory=${sparkExecutorMemory}
--driver-memory=${sparkDriverMemory}
--conf spark.dynamicAllocation.maxExecutors="2"
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
--conf spark.sql.shuffle.partitions=3840
</spark-opts>
<arg>--graphPath</arg><arg>${graphInputPath}</arg>
<arg>--workingPath</arg><arg>${workingPath}</arg>
<arg>--index</arg><arg>${esIndexName}</arg>
<arg>--esHost</arg><arg>${esIndexHost}</arg>
</spark>
<ok to="End"/>
<error to="Kill"/>

10
dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java
View File

@ -45,6 +45,16 @@ public class EntityMergerTest implements Serializable {
}
@Test
public void softwareMergerTest() throws InstantiationException, IllegalAccessException {
List<Tuple2<String, Software>> softwares = readSample(testEntityBasePath + "/software_merge.json", Software.class);
Software merged = DedupRecordFactory
.entityMerger(dedupId, softwares.iterator(), 0, dataInfo, Software.class);
System.out.println(merged.getBestaccessright().getClassid());
}
@Test
public void publicationMergerTest() throws InstantiationException, IllegalAccessException {

6
dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/SparkDedupTest.java
View File

@ -182,7 +182,7 @@ public class SparkDedupTest implements Serializable {
.count();
assertEquals(3432, orgs_simrel);
assertEquals(7152, pubs_simrel);
assertEquals(7054, pubs_simrel);
assertEquals(344, sw_simrel);
assertEquals(458, ds_simrel);
assertEquals(6750, orp_simrel);
@ -234,7 +234,7 @@ public class SparkDedupTest implements Serializable {
.count();
assertEquals(1276, orgs_mergerel);
assertEquals(1442, pubs_mergerel);
assertEquals(1440, pubs_mergerel);
assertEquals(288, sw_mergerel);
assertEquals(472, ds_mergerel);
assertEquals(718, orp_mergerel);
@ -423,7 +423,7 @@ public class SparkDedupTest implements Serializable {
long relations = jsc.textFile(testDedupGraphBasePath + "/relation").count();
assertEquals(4975, relations);
assertEquals(4971, relations);
// check deletedbyinference
final Dataset<Relation> mergeRels = spark

7
dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/conf/ds.curr.conf.json
View File

@ -6,10 +6,10 @@
"subEntityType" : "resulttype",
"subEntityValue" : "dataset",
"orderField" : "title",
"queueMaxSize" : "2000",
"queueMaxSize" : "800",
"groupMaxSize" : "100",
"maxChildren" : "100",
"slidingWindowSize" : "200",
"slidingWindowSize" : "80",
"rootBuilder" : ["result", "resultProject_outcome_isProducedBy", "resultResult_publicationDataset_isRelatedTo", "resultResult_similarity_isAmongTopNSimilarDocuments", "resultResult_similarity_hasAmongTopNSimilarDocuments", "resultOrganization_affiliation_hasAuthorInstitution", "resultResult_part_hasPart", "resultResult_part_isPartOf", "resultResult_supplement_isSupplementTo", "resultResult_supplement_isSupplementedBy", "resultResult_version_isVersionOf" ],
"includeChildren" : "true",
"idPath" : "$.id",
@ -17,8 +17,7 @@
},
"pace" : {
"clustering" : [
{ "name" : "ngrampairs", "fields" : [ "title" ], "params" : { "max" : "1", "ngramLen" : "3"} },
{ "name" : "suffixprefix", "fields" : [ "title" ], "params" : { "max" : "1", "len" : "3" } },
{ "name" : "wordssuffixprefix", "fields" : [ "title" ], "params" : { "max" : "2", "len" : "3" } },
{ "name" : "lowercase", "fields" : [ "doi" ], "params" : { } }
],
"decisionTree" : {

7
dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/conf/orp.curr.conf.json
View File

@ -6,10 +6,10 @@
"subEntityType" : "resulttype",
"subEntityValue" : "otherresearchproduct",
"orderField" : "title",
"queueMaxSize" : "2000",
"queueMaxSize" : "800",
"groupMaxSize" : "100",
"maxChildren" : "100",
"slidingWindowSize" : "200",
"slidingWindowSize" : "80",
"rootBuilder" : [ "result", "resultProject_outcome_isProducedBy", "resultResult_publicationDataset_isRelatedTo", "resultResult_similarity_isAmongTopNSimilarDocuments", "resultResult_similarity_hasAmongTopNSimilarDocuments", "resultOrganization_affiliation_hasAuthorInstitution", "resultResult_part_hasPart", "resultResult_part_isPartOf", "resultResult_supplement_isSupplementTo", "resultResult_supplement_isSupplementedBy", "resultResult_version_isVersionOf" ],
"includeChildren" : "true",
"idPath" : "$.id",
@ -17,8 +17,7 @@
},
"pace" : {
"clustering" : [
{ "name" : "ngrampairs", "fields" : [ "title" ], "params" : { "max" : "1", "ngramLen" : "3"} },
{ "name" : "suffixprefix", "fields" : [ "title" ], "params" : { "max" : "1", "len" : "3" } },
{ "name" : "wordssuffixprefix", "fields" : [ "title" ], "params" : { "max" : "2", "len" : "3" } },
{ "name" : "lowercase", "fields" : [ "doi" ], "params" : { } }
],
"decisionTree" : {

7
dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/conf/pub.curr.conf.json
View File

@ -6,10 +6,10 @@
"subEntityType": "resulttype",
"subEntityValue": "publication",
"orderField": "title",
"queueMaxSize": "2000",
"queueMaxSize": "800",
"groupMaxSize": "100",
"maxChildren": "100",
"slidingWindowSize": "200",
"slidingWindowSize": "80",
"rootBuilder": [
"result",
"resultProject_outcome_isProducedBy",
@ -29,8 +29,7 @@
},
"pace": {
"clustering" : [
{ "name" : "ngrampairs", "fields" : [ "title" ], "params" : { "max" : "1", "ngramLen" : "3"} },
{ "name" : "suffixprefix", "fields" : [ "title" ], "params" : { "max" : "1", "len" : "3" } },
{ "name" : "wordssuffixprefix", "fields" : [ "title" ], "params" : { "max" : "2", "len" : "3" } },
{ "name" : "lowercase", "fields" : [ "doi" ], "params" : { } }
],
"decisionTree": {

7
dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/conf/sw.curr.conf.json
View File

@ -6,10 +6,10 @@
"subEntityType" : "resulttype",
"subEntityValue" : "software",
"orderField" : "title",
"queueMaxSize" : "2000",
"queueMaxSize" : "800",
"groupMaxSize" : "100",
"maxChildren" : "100",
"slidingWindowSize" : "200",
"slidingWindowSize" : "80",
"rootBuilder" : [ "result", "resultProject_outcome_isProducedBy", "resultResult_publicationDataset_isRelatedTo", "resultResult_similarity_isAmongTopNSimilarDocuments", "resultResult_similarity_hasAmongTopNSimilarDocuments", "resultOrganization_affiliation_hasAuthorInstitution", "resultResult_part_hasPart", "resultResult_part_isPartOf", "resultResult_supplement_isSupplementTo", "resultResult_supplement_isSupplementedBy", "resultResult_version_isVersionOf" ],
"includeChildren" : "true",
"idPath" : "$.id",
@ -17,8 +17,7 @@
},
"pace" : {
"clustering" : [
{ "name" : "ngrampairs", "fields" : [ "title" ], "params" : { "max" : "1", "ngramLen" : "3"} },
{ "name" : "suffixprefix", "fields" : [ "title" ], "params" : { "max" : "1", "len" : "3" } },
{ "name" : "wordssuffixprefix", "fields" : [ "title" ], "params" : { "max" : "2", "len" : "3" } },
{ "name" : "lowercase", "fields" : [ "doi", "url" ], "params" : { } }
],
"decisionTree": {

3
dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/software_merge.json Normal file
View File

File diff suppressed because one or more lines are too long

17
dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/CleanGraphSparkJob.java
View File

@ -8,6 +8,7 @@ import java.util.Objects;
import java.util.Optional;
import java.util.stream.Collectors;
import eu.dnetlib.dhp.oa.graph.raw.AbstractMdRecordToOafMapper;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.spark.SparkConf;
@ -97,7 +98,7 @@ public class CleanGraphSparkJob {
.json(outputPath);
}
private static <T extends Oaf> T fixDefaults(T value) {
protected static <T extends Oaf> T fixDefaults(T value) {
if (value instanceof Datasource) {
// nothing to clean here
} else if (value instanceof Project) {
@ -134,11 +135,6 @@ public class CleanGraphSparkJob {
.setResourcetype(
qualifier("UNKNOWN", "Unknown", ModelConstants.DNET_DATA_CITE_RESOURCE));
}
if (Objects.isNull(r.getBestaccessright()) || StringUtils.isBlank(r.getBestaccessright().getClassid())) {
r
.setBestaccessright(
qualifier("UNKNOWN", "not available", ModelConstants.DNET_ACCESS_MODES));
}
if (Objects.nonNull(r.getInstance())) {
for (Instance i : r.getInstance()) {
if (Objects.isNull(i.getAccessright()) || StringUtils.isBlank(i.getAccessright().getClassid())) {
@ -152,6 +148,15 @@ public class CleanGraphSparkJob {
}
}
}
if (Objects.isNull(r.getBestaccessright()) || StringUtils.isBlank(r.getBestaccessright().getClassid())) {
Qualifier bestaccessrights = AbstractMdRecordToOafMapper.createBestAccessRights(r.getInstance());
if (Objects.isNull(bestaccessrights)) {
r.setBestaccessright(
qualifier("UNKNOWN", "not available", ModelConstants.DNET_ACCESS_MODES));
} else {
r.setBestaccessright(bestaccessrights);
}
}
if (Objects.nonNull(r.getAuthor())) {
boolean nullRank = r
.getAuthor()

4
dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java
View File

@ -378,6 +378,10 @@ public abstract class AbstractMdRecordToOafMapper {
protected abstract Field<String> prepareDatasetStorageDate(Document doc, DataInfo info);
public static Qualifier createBestAccessRights(final List<Instance> instanceList) {
return getBestAccessRights(instanceList);
}
protected static Qualifier getBestAccessRights(final List<Instance> instanceList) {
if (instanceList != null) {
final Optional<Qualifier> min = instanceList

5
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/clean/CleaningFunctionTest.java
View File

@ -57,6 +57,8 @@ public class CleaningFunctionTest {
String json = IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/clean/result.json"));
Publication p_in = MAPPER.readValue(json, Publication.class);
assertNull(p_in.getBestaccessright());
assertTrue(p_in instanceof Result);
assertTrue(p_in instanceof Publication);
@ -84,6 +86,9 @@ public class CleaningFunctionTest {
.map(p -> p.getQualifier())
.allMatch(q -> pidTerms.contains(q.getClassid())));
Publication p_defaults = CleanGraphSparkJob.fixDefaults(p_out);
assertEquals("CLOSED", p_defaults.getBestaccessright().getClassid());
// TODO add more assertions to verity the cleaned values
System.out.println(MAPPER.writeValueAsString(p_out));

7
dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/clean/result.json
View File

@ -185,12 +185,7 @@
"surname": ""
}
],
"bestaccessright": {
"classid": "CLOSED",
"classname": "Closed Access",
"schemeid": "dnet:access_modes",
"schemename": "dnet:access_modes"
},
"bestaccessright": null,
"collectedfrom": [
{
"key": "10|CSC_________::a2b9ce8435390bcbfc05f3cae3948747",

1
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/PrepareRelationsJob.java
View File

@ -156,6 +156,7 @@ public class PrepareRelationsJob {
.parquet(outputPath);
}
// experimental
private static void prepareRelationsDataset(
SparkSession spark, String inputRelationsPath, String outputPath, Set<String> relationFilter, int maxRelations,
int relPartitions) {

1
dhp-workflows/dhp-graph-provision/src/main/resources/eu/dnetlib/dhp/oa/provision/oozie_app/workflow.xml
View File

@ -134,6 +134,7 @@
<arg>--inputRelationsPath</arg><arg>${inputGraphRootPath}/relation</arg>
<arg>--outputPath</arg><arg>${workingDir}/relation</arg>
<arg>--maxRelations</arg><arg>${maxRelations}</arg>
<arg>--relationFilter</arg><arg>${relationFilter}</arg>
<arg>--relPartitions</arg><arg>5000</arg>
</spark>
<ok to="fork_join_related_entities"/>

159
dhp-workflows/dhp-worfklow-profiles/src/main/resources/eu/dnetlib/dhp/wf/profiles/graph_construction.xml
View File

@ -11,6 +11,29 @@
<WORKFLOW_TYPE>Data Provision</WORKFLOW_TYPE>
<WORKFLOW_PRIORITY>30</WORKFLOW_PRIORITY>
<CONFIGURATION start="manual">
<NODE isStart="true" name="setReuseContent" type="SetEnvParameter">
<DESCRIPTION>reuse cached content from the aggregation system</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">reuseContent</PARAM>
<PARAM function="validValues(['true', 'false'])" managedBy="user" name="parameterValue" required="true" type="string">true</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setContentPath" type="SetEnvParameter">
<DESCRIPTION>set the aggregator content path</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">contentPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_aggregator</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setAggregatorGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the path containing the AGGREGATOR graph</DESCRIPTION>
<PARAMETERS>
@ -62,87 +85,94 @@
</ARCS>
</NODE>
<NODE isStart="true" name="setCleanedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
<NODE isStart="true" name="setOrcidGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the ORCID enriched graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">cleanedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/05_graph_cleaned</PARAM>
<PARAM managedBy="system" name="parameterName" required="true" type="string">orcidGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/05_graph_orcid</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setOrcidGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the ORCID enriched graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">orcidGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/06_graph_orcid</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setBulkTaggingGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the BULK TAGGED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">bulkTaggingGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/07_graph_bulktagging</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/06_graph_bulktagging</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setAffiliationGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the AFFILIATION from INSTITUTIONAL REPOS graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">affiliationGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/08_graph_affiliation</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/07_graph_affiliation</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setCommunityOrganizationGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the COMMUNITY from SELECTED SOURCES graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">communityOrganizationGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/09_graph_comunity_organization</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/08_graph_comunity_organization</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setFundingGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the FUNDING from SEMANTIC RELATION graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">fundingGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/10_graph_funding</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/09_graph_funding</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setCommunitySemRelGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the COMMUNITY from SEMANTIC RELATION graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">communitySemRelGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/11_graph_comunity_sem_rel</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/10_graph_comunity_sem_rel</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setCountryGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the COUNTRY enriched graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">countryGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/12_graph_country</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/11_graph_country</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setCleanedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">cleanedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/12_graph_cleaned</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setBlacklistedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the blacklisted graph</DESCRIPTION>
<PARAMETERS>
@ -153,6 +183,7 @@
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setIsLookUpUrl" type="SetEnvParameter">
<DESCRIPTION>Set the lookup address</DESCRIPTION>
<PARAMETERS>
@ -163,6 +194,7 @@
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setBulkTaggingPathMap" type="SetEnvParameter">
<DESCRIPTION>Set the map of paths for the Bulk Tagging</DESCRIPTION>
<PARAMETERS>
@ -173,6 +205,7 @@
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setPropagationOrganizationCommunityMap" type="SetEnvParameter">
<DESCRIPTION>Set the map of associations organization, community list for the propagation of community to result through organization</DESCRIPTION>
<PARAMETERS>
@ -185,6 +218,7 @@
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setDedupConfig" type="SetEnvParameter">
<DESCRIPTION>Set the dedup orchestrator name</DESCRIPTION>
<PARAMETERS>
@ -195,6 +229,7 @@
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="actionSetsRaw" type="SetEnvParameter">
<DESCRIPTION>declares the ActionSet ids to promote in the RAW graph</DESCRIPTION>
<PARAMETERS>
@ -205,6 +240,7 @@
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="actionSetsIIS" type="SetEnvParameter">
<DESCRIPTION>declares the ActionSet ids to promote in the INFERRED graph</DESCRIPTION>
<PARAMETERS>
@ -215,6 +251,7 @@
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isJoin="true" name="waitConfig">
<DESCRIPTION>wait configurations</DESCRIPTION>
<PARAMETERS/>
@ -222,6 +259,7 @@
<ARC to="aggregatorGraph"/>
</ARCS>
</NODE>
<NODE name="aggregatorGraph" type="SubmitHadoopJob">
<DESCRIPTION>create the AGGREGATOR graph</DESCRIPTION>
<PARAMETERS>
@ -230,7 +268,9 @@
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'graphOutputPath' : 'aggregatorGraphPath',
'isLookupUrl' : 'isLookUpUrl'
'isLookupUrl' : 'isLookUpUrl',
'reuseContent' : 'reuseContent',
'contentPath' : 'contentPath'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
@ -241,8 +281,6 @@
'postgresURL' : 'jdbc:postgresql://beta.services.openaire.eu:5432/dnet_openaireplus',
'postgresUser' : 'dnet',
'postgresPassword' : '',
'reuseContent' : 'false',
'contentPath' : '/tmp/beta_provision/aggregator',
'workingDir' : '/tmp/beta_provision/working_dir/aggregator'
}
</PARAM>
@ -252,6 +290,7 @@
<ARC to="promoteActionsRaw"/>
</ARCS>
</NODE>
<NODE name="promoteActionsRaw" type="SubmitHadoopJob">
<DESCRIPTION>create the RAW graph</DESCRIPTION>
<PARAMETERS>
@ -289,6 +328,7 @@
<ARC to="duplicateScan"/>
</ARCS>
</NODE>
<NODE name="duplicateScan" type="SubmitHadoopJob">
<DESCRIPTION>search for duplicates in the raw graph</DESCRIPTION>
<PARAMETERS>
@ -314,6 +354,7 @@
<ARC to="promoteActionsIIS"/>
</ARCS>
</NODE>
<NODE name="promoteActionsIIS" type="SubmitHadoopJob">
<DESCRIPTION>create the INFERRED graph</DESCRIPTION>
<PARAMETERS>
@ -351,6 +392,7 @@
<ARC to="dedupConsistency"/>
</ARCS>
</NODE>
<NODE name="dedupConsistency" type="SubmitHadoopJob">
<DESCRIPTION>mark duplicates as deleted and redistribute the relationships</DESCRIPTION>
<PARAMETERS>
@ -375,41 +417,6 @@
</ARCS>
</NODE>
<NODE name="graphCleaning" type="SubmitHadoopJob">
<DESCRIPTION>clean the properties in the graph typed as Qualifier according to the vocabulary indicated in schemeid</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'graphInputPath' : 'consistentGraphPath',
'graphOutputPath': 'cleanedGraphPath',
'isLookupUrl': 'isLookUpUrl'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
{
'oozie.wf.application.path' : '/lib/dnet/oa/graph/clean/oozie_app',
'workingPath' : '/tmp/beta_provision/working_dir/clean'
}
</PARAM>
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="SKIP_ENRICHMENT"/>
</ARCS>
</NODE>
<NODE name="SKIP_ENRICHMENT" type="Selection">
<DESCRIPTION>Do we skip the graph enrichment steps? (Yes to prepare the graph for the IIS)</DESCRIPTION>
<PARAMETERS>
<PARAM function="validValues(['YES', 'NO'])" managedBy="user" name="selection" required="true" type="string">NO</PARAM>
</PARAMETERS>
<ARCS>
<ARC name="YES" to="success"/>
<ARC name="NO" to="orcidPropagation"/>
</ARCS>
</NODE>
<NODE name="orcidPropagation" type="SubmitHadoopJob">
<DESCRIPTION>propagates ORCID among results linked by allowedsemrels semantic relationships</DESCRIPTION>
<PARAMETERS>
@ -417,7 +424,7 @@
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'sourcePath' : 'cleanedGraphPath',
'sourcePath' : 'consistentGraphPath',
'outputPath': 'orcidGraphPath'
}
</PARAM>
@ -435,6 +442,7 @@
<ARC to="bulkTagging"/>
</ARCS>
</NODE>
<NODE name="bulkTagging" type="SubmitHadoopJob">
<DESCRIPTION>mark results respecting some rules as belonging to communities</DESCRIPTION>
<PARAMETERS>
@ -460,6 +468,7 @@
<ARC to="affiliationPropagation"/>
</ARCS>
</NODE>
<NODE name="affiliationPropagation" type="SubmitHadoopJob">
<DESCRIPTION>creates relashionships between results and organizations when the organizations are associated to institutional repositories</DESCRIPTION>
<PARAMETERS>
@ -484,6 +493,7 @@
<ARC to="communityOrganizationPropagation"/>
</ARCS>
</NODE>
<NODE name="communityOrganizationPropagation" type="SubmitHadoopJob">
<DESCRIPTION>marks as belonging to communities the result collected from datasources related to the organizations specified in the organizationCommunityMap</DESCRIPTION>
<PARAMETERS>
@ -509,6 +519,7 @@
<ARC to="resultProjectPropagation"/>
</ARCS>
</NODE>
<NODE name="resultProjectPropagation" type="SubmitHadoopJob">
<DESCRIPTION>created relation between projects and results linked to other results trough allowedsemrel semantic relations linked to projects</DESCRIPTION>
<PARAMETERS>
@ -534,6 +545,7 @@
<ARC to="communitySemrelPropagation"/>
</ARCS>
</NODE>
<NODE name="communitySemrelPropagation" type="SubmitHadoopJob">
<DESCRIPTION>tag as belonging to communitites result in in allowedsemrels relation with other result already linked to communities </DESCRIPTION>
<PARAMETERS>
@ -560,6 +572,7 @@
<ARC to="countryPropagation"/>
</ARCS>
</NODE>
<NODE name="countryPropagation" type="SubmitHadoopJob">
<DESCRIPTION>associated to results colleced from allowedtypes and those in the whithelist the country of the organization(s) handling the datasource it is collected from </DESCRIPTION>
<PARAMETERS>
@ -584,10 +597,36 @@
</PARAM>
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="graphCleaning"/>
</ARCS>
</NODE>
<NODE name="graphCleaning" type="SubmitHadoopJob">
<DESCRIPTION>clean the properties in the graph typed as Qualifier according to the vocabulary indicated in schemeid</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'graphInputPath' : 'countryGraphPath',
'graphOutputPath': 'cleanedGraphPath',
'isLookupUrl': 'isLookUpUrl'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
{
'oozie.wf.application.path' : '/lib/dnet/oa/graph/clean/oozie_app',
'workingPath' : '/tmp/beta_provision/working_dir/clean'
}
</PARAM>
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="blacklistRelations"/>
</ARCS>
</NODE>
<NODE name="blacklistRelations" type="SubmitHadoopJob">
<DESCRIPTION>removes blacklisted relations </DESCRIPTION>
<PARAMETERS>
@ -595,7 +634,7 @@
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'sourcePath' : 'countryGraphPath',
'sourcePath' : 'cleanedGraphPath',
'outputPath': 'blacklistedGraphPath'
}
</PARAM>

2
pom.xml
View File

@ -315,7 +315,7 @@
<dependency>
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-pace-core</artifactId>
<version>4.0.1</version>
<version>4.0.2</version>
</dependency>
<dependency>
<groupId>eu.dnetlib</groupId>