enrichment steps #38
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@ -11,7 +11,7 @@ import org.apache.spark.api.java.function.MapFunction;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.SaveMode;
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import org.apache.spark.sql.expressions.Aggregator;
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import org.apache.spark.sql.TypedColumn;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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@ -22,15 +22,15 @@ import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedProject;
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import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedProjectAggregator;
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import scala.Tuple2;
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public class JoinEntitiesJob {
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public class JoinStep1Job {
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private static final Logger log = LoggerFactory.getLogger(JoinEntitiesJob.class);
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private static final Logger log = LoggerFactory.getLogger(JoinStep1Job.class);
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public static void main(final String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils
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.toString(
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JoinEntitiesJob.class
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JoinStep1Job.class
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.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json")));
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parser.parseArgument(args);
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@ -43,7 +43,7 @@ public class JoinEntitiesJob {
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final String workingPath = parser.get("workingPath");
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log.info("workingPath: {}", workingPath);
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final String joinedEntitiesPath = workingPath + "/joinedEntities";
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final String joinedEntitiesPath = workingPath + "/joinedEntities_step1";
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log.info("joinedEntitiesPath: {}", joinedEntitiesPath);
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final SparkConf conf = new SparkConf();
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@ -52,39 +52,28 @@ public class JoinEntitiesJob {
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ClusterUtils.removeDir(spark, joinedEntitiesPath);
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final Dataset<OaBrokerMainEntity> r0 = ClusterUtils
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final Dataset<OaBrokerMainEntity> sources = ClusterUtils
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.readPath(spark, workingPath + "/simpleEntities", OaBrokerMainEntity.class);
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final Dataset<OaBrokerMainEntity> r1 = join(
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r0, ClusterUtils.readPath(spark, workingPath + "/relatedProjects", RelatedProject.class),
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new RelatedProjectAggregator());
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// final Dataset<OaBrokerMainEntity> r2 = join(
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// r1, ClusterUtils.readPath(spark, workingPath + "/relatedDatasets", RelatedDataset.class), new
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// RelatedDatasetAggregator());
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// final Dataset<OaBrokerMainEntity> r3 = join(
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// r2, ClusterUtils.readPath(spark, workingPath + "/relatedPublications", RelatedPublication.class), new
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// RelatedPublicationAggregator());
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// final Dataset<OaBrokerMainEntity> r4 = join(
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// r3, ClusterUtils.readPath(spark, workingPath + "/relatedSoftwares", RelatedSoftware.class), new
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// RelatedSoftwareAggregator());
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final Dataset<RelatedProject> typedRels = ClusterUtils
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.readPath(spark, workingPath + "/relatedProjects", RelatedProject.class);
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r1.write().mode(SaveMode.Overwrite).json(joinedEntitiesPath);
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final TypedColumn<Tuple2<OaBrokerMainEntity, RelatedProject>, OaBrokerMainEntity> aggr = new RelatedProjectAggregator()
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.toColumn();
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sources
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.joinWith(typedRels, sources.col("openaireId").equalTo(typedRels.col("source")), "left_outer")
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.groupByKey(
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(MapFunction<Tuple2<OaBrokerMainEntity, RelatedProject>, String>) t -> t._1.getOpenaireId(),
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Encoders.STRING())
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.agg(aggr)
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.map(t -> t._2, Encoders.bean(OaBrokerMainEntity.class))
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.write()
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.mode(SaveMode.Overwrite)
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.json(joinedEntitiesPath);
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});
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}
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private static <T> Dataset<OaBrokerMainEntity> join(final Dataset<OaBrokerMainEntity> sources,
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final Dataset<T> typedRels,
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final Aggregator<Tuple2<OaBrokerMainEntity, T>, OaBrokerMainEntity, OaBrokerMainEntity> aggr) {
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return sources
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.joinWith(typedRels, sources.col("openaireId").equalTo(typedRels.col("source")), "left_outer")
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.groupByKey(
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(MapFunction<Tuple2<OaBrokerMainEntity, T>, String>) t -> t._1.getOpenaireId(), Encoders.STRING())
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.agg(aggr.toColumn())
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.map(t -> t._2, Encoders.bean(OaBrokerMainEntity.class));
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}
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}
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@ -0,0 +1,79 @@
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package eu.dnetlib.dhp.broker.oa;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import java.util.Optional;
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import org.apache.commons.io.IOUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.function.MapFunction;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.SaveMode;
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import org.apache.spark.sql.TypedColumn;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import eu.dnetlib.broker.objects.OaBrokerMainEntity;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
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import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedSoftware;
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import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedSoftwareAggregator;
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import scala.Tuple2;
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public class JoinStep2Job {
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private static final Logger log = LoggerFactory.getLogger(JoinStep2Job.class);
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public static void main(final String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils
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.toString(
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JoinStep2Job.class
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.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json")));
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parser.parseArgument(args);
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final Boolean isSparkSessionManaged = Optional
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.ofNullable(parser.get("isSparkSessionManaged"))
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.map(Boolean::valueOf)
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.orElse(Boolean.TRUE);
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log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
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final String workingPath = parser.get("workingPath");
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log.info("workingPath: {}", workingPath);
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final String joinedEntitiesPath = workingPath + "/joinedEntities_step2";
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log.info("joinedEntitiesPath: {}", joinedEntitiesPath);
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final SparkConf conf = new SparkConf();
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runWithSparkSession(conf, isSparkSessionManaged, spark -> {
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ClusterUtils.removeDir(spark, joinedEntitiesPath);
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final Dataset<OaBrokerMainEntity> sources = ClusterUtils
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.readPath(spark, workingPath + "/joinedEntities_step1", OaBrokerMainEntity.class);
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final Dataset<RelatedSoftware> typedRels = ClusterUtils
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.readPath(spark, workingPath + "/relatedSoftwares", RelatedSoftware.class);
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final TypedColumn<Tuple2<OaBrokerMainEntity, RelatedSoftware>, OaBrokerMainEntity> aggr = new RelatedSoftwareAggregator()
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.toColumn();
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sources
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.joinWith(typedRels, sources.col("openaireId").equalTo(typedRels.col("source")), "left_outer")
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.groupByKey(
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(MapFunction<Tuple2<OaBrokerMainEntity, RelatedSoftware>, String>) t -> t._1.getOpenaireId(),
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Encoders.STRING())
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.agg(aggr)
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.map(t -> t._2, Encoders.bean(OaBrokerMainEntity.class))
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.write()
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.mode(SaveMode.Overwrite)
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.json(joinedEntitiesPath);
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});
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}
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}
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@ -0,0 +1,79 @@
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package eu.dnetlib.dhp.broker.oa;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import java.util.Optional;
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import org.apache.commons.io.IOUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.function.MapFunction;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.SaveMode;
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import org.apache.spark.sql.TypedColumn;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import eu.dnetlib.broker.objects.OaBrokerMainEntity;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
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import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedDataset;
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import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedDatasetAggregator;
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import scala.Tuple2;
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public class JoinStep3Job {
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private static final Logger log = LoggerFactory.getLogger(JoinStep3Job.class);
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public static void main(final String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils
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.toString(
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JoinStep3Job.class
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.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json")));
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parser.parseArgument(args);
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final Boolean isSparkSessionManaged = Optional
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.ofNullable(parser.get("isSparkSessionManaged"))
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.map(Boolean::valueOf)
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.orElse(Boolean.TRUE);
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log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
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final String workingPath = parser.get("workingPath");
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log.info("workingPath: {}", workingPath);
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final String joinedEntitiesPath = workingPath + "/joinedEntities_step3";
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log.info("joinedEntitiesPath: {}", joinedEntitiesPath);
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final SparkConf conf = new SparkConf();
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runWithSparkSession(conf, isSparkSessionManaged, spark -> {
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ClusterUtils.removeDir(spark, joinedEntitiesPath);
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final Dataset<OaBrokerMainEntity> sources = ClusterUtils
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.readPath(spark, workingPath + "/joinedEntities_step2", OaBrokerMainEntity.class);
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final Dataset<RelatedDataset> typedRels = ClusterUtils
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.readPath(spark, workingPath + "/relatedDatasets", RelatedDataset.class);
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final TypedColumn<Tuple2<OaBrokerMainEntity, RelatedDataset>, OaBrokerMainEntity> aggr = new RelatedDatasetAggregator()
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.toColumn();
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sources
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.joinWith(typedRels, sources.col("openaireId").equalTo(typedRels.col("source")), "left_outer")
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.groupByKey(
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(MapFunction<Tuple2<OaBrokerMainEntity, RelatedDataset>, String>) t -> t._1.getOpenaireId(),
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Encoders.STRING())
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.agg(aggr)
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.map(t -> t._2, Encoders.bean(OaBrokerMainEntity.class))
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.write()
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.mode(SaveMode.Overwrite)
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.json(joinedEntitiesPath);
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});
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}
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}
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@ -0,0 +1,79 @@
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package eu.dnetlib.dhp.broker.oa;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import java.util.Optional;
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import org.apache.commons.io.IOUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.function.MapFunction;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.SaveMode;
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import org.apache.spark.sql.TypedColumn;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import eu.dnetlib.broker.objects.OaBrokerMainEntity;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
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import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedPublication;
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import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedPublicationAggregator;
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import scala.Tuple2;
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public class JoinStep4Job {
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private static final Logger log = LoggerFactory.getLogger(JoinStep4Job.class);
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public static void main(final String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils
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.toString(
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JoinStep4Job.class
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.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json")));
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parser.parseArgument(args);
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final Boolean isSparkSessionManaged = Optional
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.ofNullable(parser.get("isSparkSessionManaged"))
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.map(Boolean::valueOf)
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.orElse(Boolean.TRUE);
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log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
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final String workingPath = parser.get("workingPath");
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log.info("workingPath: {}", workingPath);
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final String joinedEntitiesPath = workingPath + "/joinedEntities_step4";
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log.info("joinedEntitiesPath: {}", joinedEntitiesPath);
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final SparkConf conf = new SparkConf();
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runWithSparkSession(conf, isSparkSessionManaged, spark -> {
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ClusterUtils.removeDir(spark, joinedEntitiesPath);
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final Dataset<OaBrokerMainEntity> sources = ClusterUtils
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.readPath(spark, workingPath + "/joinedEntities_step3", OaBrokerMainEntity.class);
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final Dataset<RelatedPublication> typedRels = ClusterUtils
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.readPath(spark, workingPath + "/relatedPublications", RelatedPublication.class);
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final TypedColumn<Tuple2<OaBrokerMainEntity, RelatedPublication>, OaBrokerMainEntity> aggr = new RelatedPublicationAggregator()
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.toColumn();
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sources
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.joinWith(typedRels, sources.col("openaireId").equalTo(typedRels.col("source")), "left_outer")
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.groupByKey(
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(MapFunction<Tuple2<OaBrokerMainEntity, RelatedPublication>, String>) t -> t._1.getOpenaireId(),
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Encoders.STRING())
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.agg(aggr)
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.map(t -> t._2, Encoders.bean(OaBrokerMainEntity.class))
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.write()
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.mode(SaveMode.Overwrite)
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.json(joinedEntitiesPath);
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});
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}
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}
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@ -32,7 +32,7 @@ public class PrepareGroupsJob {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils
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.toString(
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JoinEntitiesJob.class
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PrepareGroupsJob.class
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.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json")));
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parser.parseArgument(args);
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@ -58,7 +58,7 @@ public class PrepareGroupsJob {
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ClusterUtils.removeDir(spark, groupsPath);
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final Dataset<OaBrokerMainEntity> results = ClusterUtils
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.readPath(spark, workingPath + "/joinedEntities", OaBrokerMainEntity.class);
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.readPath(spark, workingPath + "/joinedEntities_step4", OaBrokerMainEntity.class);
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final Dataset<Relation> mergedRels = ClusterUtils
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.readPath(spark, graphPath + "/relation", Relation.class)
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|
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@ -61,6 +61,7 @@ public class PrepareRelatedDatasetsJob {
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final Dataset<Relation> rels = ClusterUtils
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.readPath(spark, graphPath + "/relation", Relation.class)
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.filter(r -> r.getDataInfo().getDeletedbyinference())
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.filter(r -> r.getRelType().equals(ModelConstants.RESULT_RESULT))
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.filter(r -> ClusterUtils.isValidResultResultClass(r.getRelClass()))
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.filter(r -> !ClusterUtils.isDedupRoot(r.getSource()))
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|
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@ -13,8 +13,6 @@ import org.apache.spark.sql.SaveMode;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.broker.objects.OaBrokerProject;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
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@ -29,8 +27,6 @@ public class PrepareRelatedProjectsJob {
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private static final Logger log = LoggerFactory.getLogger(PrepareRelatedProjectsJob.class);
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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public static void main(final String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils
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@ -67,6 +63,7 @@ public class PrepareRelatedProjectsJob {
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final Dataset<Relation> rels = ClusterUtils
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.readPath(spark, graphPath + "/relation", Relation.class)
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.filter(r -> r.getDataInfo().getDeletedbyinference())
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.filter(r -> r.getRelType().equals(ModelConstants.RESULT_PROJECT))
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.filter(r -> !r.getRelClass().equals(BrokerConstants.IS_MERGED_IN_CLASS))
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.filter(r -> !ClusterUtils.isDedupRoot(r.getSource()))
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|
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@ -13,8 +13,6 @@ import org.apache.spark.sql.SaveMode;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.broker.objects.OaBrokerRelatedPublication;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
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@ -28,8 +26,6 @@ public class PrepareRelatedPublicationsJob {
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private static final Logger log = LoggerFactory.getLogger(PrepareRelatedPublicationsJob.class);
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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|
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public static void main(final String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
|
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IOUtils
|
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|
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@ -68,6 +64,7 @@ public class PrepareRelatedPublicationsJob {
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final Dataset<Relation> rels = ClusterUtils
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.readPath(spark, graphPath + "/relation", Relation.class)
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.filter(r -> r.getDataInfo().getDeletedbyinference())
|
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.filter(r -> r.getRelType().equals(ModelConstants.RESULT_RESULT))
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.filter(r -> ClusterUtils.isValidResultResultClass(r.getRelClass()))
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.filter(r -> !ClusterUtils.isDedupRoot(r.getSource()))
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|
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|
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|
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@ -13,8 +13,6 @@ import org.apache.spark.sql.SaveMode;
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import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
|
||||
import eu.dnetlib.broker.objects.OaBrokerRelatedSoftware;
|
||||
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
|
||||
import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
|
||||
|
|
@ -29,8 +27,6 @@ public class PrepareRelatedSoftwaresJob {
|
|||
|
||||
private static final Logger log = LoggerFactory.getLogger(PrepareRelatedSoftwaresJob.class);
|
||||
|
||||
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
|
||||
|
||||
public static void main(final String[] args) throws Exception {
|
||||
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
|
||||
IOUtils
|
||||
|
|
@ -67,6 +63,7 @@ public class PrepareRelatedSoftwaresJob {
|
|||
|
||||
final Dataset<Relation> rels = ClusterUtils
|
||||
.readPath(spark, graphPath + "/relation", Relation.class)
|
||||
.filter(r -> r.getDataInfo().getDeletedbyinference())
|
||||
.filter(r -> r.getRelType().equals(ModelConstants.RESULT_RESULT))
|
||||
.filter(r -> !r.getRelClass().equals(BrokerConstants.IS_MERGED_IN_CLASS))
|
||||
.filter(r -> !ClusterUtils.isDedupRoot(r.getSource()))
|
||||
|
|
|
|||
|
|
@ -216,14 +216,86 @@
|
|||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<join name="wait_entities_and_rels" to="join_entities"/>
|
||||
<join name="wait_entities_and_rels" to="join_entities_step1"/>
|
||||
|
||||
<action name="join_entities">
|
||||
<action name="join_entities_step1">
|
||||
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||
<master>yarn</master>
|
||||
<mode>cluster</mode>
|
||||
<name>JoinEntitiesJob</name>
|
||||
<class>eu.dnetlib.dhp.broker.oa.JoinEntitiesJob</class>
|
||||
<name>JoinStep1</name>
|
||||
<class>eu.dnetlib.dhp.broker.oa.JoinStep1Job</class>
|
||||
<jar>dhp-broker-events-${projectVersion}.jar</jar>
|
||||
<spark-opts>
|
||||
--executor-cores=${sparkExecutorCores}
|
||||
--executor-memory=${sparkExecutorMemory}
|
||||
--driver-memory=${sparkDriverMemory}
|
||||
--conf spark.extraListeners=${spark2ExtraListeners}
|
||||
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
||||
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
||||
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
||||
--conf spark.sql.shuffle.partitions=3840
|
||||
</spark-opts>
|
||||
<arg>--graphPath</arg><arg>${graphInputPath}</arg>
|
||||
<arg>--workingPath</arg><arg>${workingPath}</arg>
|
||||
</spark>
|
||||
<ok to="join_entities_step2"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="join_entities_step2">
|
||||
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||
<master>yarn</master>
|
||||
<mode>cluster</mode>
|
||||
<name>JoinStep2</name>
|
||||
<class>eu.dnetlib.dhp.broker.oa.JoinStep2Job</class>
|
||||
<jar>dhp-broker-events-${projectVersion}.jar</jar>
|
||||
<spark-opts>
|
||||
--executor-cores=${sparkExecutorCores}
|
||||
--executor-memory=${sparkExecutorMemory}
|
||||
--driver-memory=${sparkDriverMemory}
|
||||
--conf spark.extraListeners=${spark2ExtraListeners}
|
||||
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
||||
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
||||
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
||||
--conf spark.sql.shuffle.partitions=3840
|
||||
</spark-opts>
|
||||
<arg>--graphPath</arg><arg>${graphInputPath}</arg>
|
||||
<arg>--workingPath</arg><arg>${workingPath}</arg>
|
||||
</spark>
|
||||
<ok to="join_entities_step3"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="join_entities_step3">
|
||||
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||
<master>yarn</master>
|
||||
<mode>cluster</mode>
|
||||
<name>JoinStep3</name>
|
||||
<class>eu.dnetlib.dhp.broker.oa.JoinStep3Job</class>
|
||||
<jar>dhp-broker-events-${projectVersion}.jar</jar>
|
||||
<spark-opts>
|
||||
--executor-cores=${sparkExecutorCores}
|
||||
--executor-memory=${sparkExecutorMemory}
|
||||
--driver-memory=${sparkDriverMemory}
|
||||
--conf spark.extraListeners=${spark2ExtraListeners}
|
||||
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
||||
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
||||
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
||||
--conf spark.sql.shuffle.partitions=3840
|
||||
</spark-opts>
|
||||
<arg>--graphPath</arg><arg>${graphInputPath}</arg>
|
||||
<arg>--workingPath</arg><arg>${workingPath}</arg>
|
||||
</spark>
|
||||
<ok to="join_entities_step4"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="join_entities_step4">
|
||||
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||
<master>yarn</master>
|
||||
<mode>cluster</mode>
|
||||
<name>JoinStep4</name>
|
||||
<class>eu.dnetlib.dhp.broker.oa.JoinStep4Job</class>
|
||||
<jar>dhp-broker-events-${projectVersion}.jar</jar>
|
||||
<spark-opts>
|
||||
--executor-cores=${sparkExecutorCores}
|
||||
|
|
|
|||
|
|
@ -73,19 +73,19 @@
|
|||
</configuration>
|
||||
</global>
|
||||
|
||||
<start to="join_entities"/>
|
||||
<start to="join_entities_step1"/>
|
||||
|
||||
<kill name="Kill">
|
||||
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
|
||||
</kill>
|
||||
|
||||
|
||||
<action name="join_entities">
|
||||
<action name="join_entities_step1">
|
||||
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||
<master>yarn</master>
|
||||
<mode>cluster</mode>
|
||||
<name>JoinEntitiesJob</name>
|
||||
<class>eu.dnetlib.dhp.broker.oa.JoinEntitiesJob</class>
|
||||
<name>JoinStep1</name>
|
||||
<class>eu.dnetlib.dhp.broker.oa.JoinStep1Job</class>
|
||||
<jar>dhp-broker-events-${projectVersion}.jar</jar>
|
||||
<spark-opts>
|
||||
--executor-cores=${sparkExecutorCores}
|
||||
|
|
@ -100,16 +100,16 @@
|
|||
<arg>--graphPath</arg><arg>${graphInputPath}</arg>
|
||||
<arg>--workingPath</arg><arg>${workingPath}</arg>
|
||||
</spark>
|
||||
<ok to="prepare_groups"/>
|
||||
<ok to="join_entities_step2"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="prepare_groups">
|
||||
|
||||
<action name="join_entities_step2">
|
||||
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||
<master>yarn</master>
|
||||
<mode>cluster</mode>
|
||||
<name>PrepareGroupsJob</name>
|
||||
<class>eu.dnetlib.dhp.broker.oa.PrepareGroupsJob</class>
|
||||
<name>JoinStep2</name>
|
||||
<class>eu.dnetlib.dhp.broker.oa.JoinStep2Job</class>
|
||||
<jar>dhp-broker-events-${projectVersion}.jar</jar>
|
||||
<spark-opts>
|
||||
--executor-cores=${sparkExecutorCores}
|
||||
|
|
@ -124,16 +124,16 @@
|
|||
<arg>--graphPath</arg><arg>${graphInputPath}</arg>
|
||||
<arg>--workingPath</arg><arg>${workingPath}</arg>
|
||||
</spark>
|
||||
<ok to="generate_events"/>
|
||||
<ok to="join_entities_step3"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="generate_events">
|
||||
|
||||
<action name="join_entities_step3">
|
||||
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||
<master>yarn</master>
|
||||
<mode>cluster</mode>
|
||||
<name>GenerateEventsJob</name>
|
||||
<class>eu.dnetlib.dhp.broker.oa.GenerateEventsJob</class>
|
||||
<name>JoinStep3</name>
|
||||
<class>eu.dnetlib.dhp.broker.oa.JoinStep3Job</class>
|
||||
<jar>dhp-broker-events-${projectVersion}.jar</jar>
|
||||
<spark-opts>
|
||||
--executor-cores=${sparkExecutorCores}
|
||||
|
|
@ -145,9 +145,32 @@
|
|||
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
||||
--conf spark.sql.shuffle.partitions=3840
|
||||
</spark-opts>
|
||||
<arg>--graphPath</arg><arg>${graphInputPath}</arg>
|
||||
<arg>--workingPath</arg><arg>${workingPath}</arg>
|
||||
</spark>
|
||||
<ok to="join_entities_step4"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="join_entities_step4">
|
||||
<spark xmlns="uri:oozie:spark-action:0.2">
|
||||
<master>yarn</master>
|
||||
<mode>cluster</mode>
|
||||
<name>JoinStep4</name>
|
||||
<class>eu.dnetlib.dhp.broker.oa.JoinStep4Job</class>
|
||||
<jar>dhp-broker-events-${projectVersion}.jar</jar>
|
||||
<spark-opts>
|
||||
--executor-cores=${sparkExecutorCores}
|
||||
--executor-memory=${sparkExecutorMemory}
|
||||
--driver-memory=${sparkDriverMemory}
|
||||
--conf spark.extraListeners=${spark2ExtraListeners}
|
||||
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
||||
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
||||
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
||||
--conf spark.sql.shuffle.partitions=3840
|
||||
</spark-opts>
|
||||
<arg>--graphPath</arg><arg>${graphInputPath}</arg>
|
||||
<arg>--workingPath</arg><arg>${workingPath}</arg>
|
||||
<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
|
||||
<arg>--dedupConfProfile</arg><arg>${dedupConfProfId}</arg>
|
||||
</spark>
|
||||
<ok to="End"/>
|
||||
<error to="Kill"/>
|
||||
|
|
|
|||
Loading…
Reference in New Issue