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ORCID Enrichment and Download #364

Merged
claudio.atzori merged 14 commits from orcid_import into beta 2023-12-01 15:05:45 +01:00
Conversation 0 Commits 14 Files Changed 43 +10 -10
4 changed files with 10 additions and 10 deletions
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10
dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/datacite/DataciteToOAFTransformation.scala
View File

@ -176,7 +176,8 @@ object DataciteToOAFTransformation {
vocabularies.getSynonymAsQualifier(
ModelConstants.DNET_RESULT_TYPOLOGIES,
typeQualifier.getClassid
), resourceType
),
resourceType
)
}
if (schemaOrg != null && schemaOrg.nonEmpty) {
@ -188,7 +189,8 @@ object DataciteToOAFTransformation {
vocabularies.getSynonymAsQualifier(
ModelConstants.DNET_RESULT_TYPOLOGIES,
typeQualifier.getClassid
), schemaOrg
),
schemaOrg
)
}
@ -203,7 +205,8 @@ object DataciteToOAFTransformation {
vocabularies.getSynonymAsQualifier(
ModelConstants.DNET_RESULT_TYPOLOGIES,
typeQualifier.getClassid
), resourceTypeGeneral
),
resourceTypeGeneral
)
}
@ -228,7 +231,6 @@ object DataciteToOAFTransformation {
itm.setVocabularyName(ModelConstants.OPENAIRE_COAR_RESOURCE_TYPES_3_1)
i.setInstanceTypeMapping(List(itm).asJava)
typeQualifiers._2.getClassname match {
case "dataset" =>
val r = new OafDataset

1
dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/sx/bio/BioDBToOAF.scala
View File

@ -593,7 +593,6 @@ object BioDBToOAF {
itm.setVocabularyName(ModelConstants.OPENAIRE_COAR_RESOURCE_TYPES_3_1)
i.setInstanceTypeMapping(List(itm).asJava)
i.setCollectedfrom(collectedFromMap("ebi"))
d.setInstance(List(i).asJava)
i.setDateofacceptance(

5
dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/sx/bio/pubmed/PubMedToOaf.scala
View File

@ -195,7 +195,7 @@ object PubMedToOaf {
pubmedInstance.setInstanceTypeMapping(List(itm).asJava)
} else {
val i_type = article.getPublicationTypes.asScala
.map(s => (s.getValue,getVocabularyTerm(ModelConstants.DNET_PUBLICATION_RESOURCE, vocabularies, s.getValue)))
.map(s => (s.getValue, getVocabularyTerm(ModelConstants.DNET_PUBLICATION_RESOURCE, vocabularies, s.getValue)))
.find(q => q._2 != null)
if (i_type.isDefined) {
@ -205,8 +205,7 @@ object PubMedToOaf {
itm.setOriginalType(i_type.get._1)
itm.setVocabularyName(ModelConstants.OPENAIRE_COAR_RESOURCE_TYPES_3_1)
pubmedInstance.setInstanceTypeMapping(List(itm).asJava)
}
else
} else
return null
}
val result = createResult(pubmedInstance.getInstancetype, vocabularies)

4
dhp-workflows/dhp-doiboost/src/main/scala/eu/dnetlib/doiboost/crossref/Crossref2Oaf.scala
View File

@ -107,7 +107,7 @@ case object Crossref2Oaf {
.map(f => f.id)
}
def mappingResult(result: Result, json: JValue, cobjCategory: String, originalType:String): Result = {
def mappingResult(result: Result, json: JValue, cobjCategory: String, originalType: String): Result = {
implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
//MAPPING Crossref DOI into PID
@ -372,7 +372,7 @@ case object Crossref2Oaf {
objectType,
mappingCrossrefSubType.getOrElse(objectSubType, "0038 Other literature type")
)
mappingResult(result, json, cOBJCategory, originalType)
mappingResult(result, json, cOBJCategory, objectSubType)
if (result == null || result.getId == null)
return List()