dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/config-default.xml

@@ -1,11 +1,12 @@
+
 <configuration>
     <property>
         <name>jobTracker</name>
-        <value>${jobTracker}</value>
+        <value>yarnRM</value>
     </property>
     <property>
         <name>nameNode</name>
-        <value>${nameNode}</value>
+        <value>hdfs://nameservice1</value>
     </property>
     <property>
         <name>oozie.use.system.libpath</name>
@@ -16,15 +17,22 @@
         <value>spark2</value>
     </property>
     <property>
-        <name>hiveMetastoreUris</name>
+        <name>hive_db_name</name>
+        <!-- <value>stats_wf_db_galexiou_oozie</value> -->
+        <value>stats_wf_db_galexiou_oozie_beta</value>
+    </property>
+    <property>
+        <name>hive_source_db_name</name>
+        <!-- <value>openaire_prod</value> -->
+        <value>openaire2</value>
+    </property>
+    <property>
+        <name>hive_metastore_uris</name>
         <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
     </property>
     <property>
-        <name>hiveJdbcUrl</name>
+        <name>hive_jdbc_url</name>
         <value>jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000</value>
     </property>
-	<property>
+
-		<name>oozie.wf.workflow.notification.url</name>
-		<value>{serviceUrl}/v1/oozieNotification/jobUpdate?jobId=$jobId%26status=$status</value>
-	</property>
 </configuration>

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/impala-shell.sh

@@ -0,0 +1,16 @@
+export PYTHON_EGG_CACHE=/home/giorgos.alexiou/.python-eggs
+export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
+if ! [ -L $link_folder ]
+then
+    rm -Rf "$link_folder"
+    ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
+fi
+
+echo "getting file from " $3
+
+hdfs dfs -copyToLocal $3
+
+echo "running impala shell now"
+impala-shell -d $1 -f $2
+echo "impala shell finished"
+rm $2

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/impala-stats.sql

@@ -0,0 +1,77 @@
+
+INVALIDATE METADATA;
+-- CREATE TABLE chart_country_year AS SELECT org.country AS country, r.year AS year, count(distinct r.id) AS publications FROM result r, result_datasources rd, datasource d, datasource_organizations dor, organization org WHERE r.id=rd.id AND rd.datasource=d.id AND rd.datasource=dor.id AND dor.organization=org.id AND r.type='publication' AND r.bestlicence='Open Access' and r.year>='1990' AND r.year<=CAST(date_part('year',now()) AS STRING) group by org.country, r.year ORDER BY org.country, r.year;
+-- CREATE TABLE chart_country_datasources AS SELECT org.country AS country, d.name AS datasource, count(distinct r.id) AS publications FROM result r, result_datasources rd, datasource d, datasource_organizations dor, organization org WHERE r.id=rd.id AND rd.datasource=d.id AND d.id=dor.id AND dor.organization=org.id AND r.type='publication' AND r.bestlicence='Open Access' GROUP BY org.country, d.name ORDER BY org.country, publications DESC;
+-- CREATE TABLE chart_country_type AS SELECT org.country AS country, rc.type AS type, count(distinct r.id) AS publications FROM result r, result_datasources rd, datasource d, result_classifications rc, datasource_organizations dor, organization org WHERE r.id=rd.id AND r.id=rc.id AND rd.datasource=d.id AND rd.datasource=dor.id AND dor.organization=org.id AND r.type='publication' AND r.bestlicence='Open Access' GROUP BY org.country, rc.type;
+-- CREATE TABLE chart_country_fp7 AS SELECT org.country AS country, r.year AS year, count(distinct r.id) AS publications FROM result r, result_datasources rd, datasource d, datasource_organizations dor, organization org, project_results pr, project p WHERE r.id=rd.id AND rd.datasource=d.id AND rd.datasource=dor.id AND dor.organization=org.id AND r.id=pr.result AND pr.id=p.id AND p.funding_lvl0='FP7' AND r.type='publication' AND r.year>='1990' AND r.year<=CAST(date_part('year',now()) AS STRING) GROUP BY org.country, r.year ORDER BY org.country, r.year;
+-- CREATE TABLE chart_datasource_type AS SELECT rd.datasource, rc.type, count(distinct rd.id) FROM result_datasources rd, result_classifications rc WHERE rd.id=rc.id GROUP BY rd.datasource, rc.type;
+-- CREATE TABLE chart_datasource_year AS SELECT rd.datasource, r.year, count(distinct rd.id) FROM result r, result_datasources rd WHERE rd.id=r.id GROUP By rd.datasource, r.year;
+-- CREATE TABLE chart_datasource_funders AS SELECT rd.datasource, p.funder, count(distinct rd.id) FROM result_datasources rd, project p, project_results pr WHERE p.id=pr.id AND pr.result=rd.id GROUP BY rd.datasource, p.funder;
+-- CREATE TABLE chart_datasource_projects_pubs AS SELECT rd.datasource, p.title, count(distinct rd.id) FROM result_datasources rd, project p, project_results pr, result r WHERE p.id=pr.id AND pr.result=rd.id AND pr.result=r.id AND r.type='publication' GROUP BY rd.datasource, p.title;
+-- CREATE TABLE chart_datasource_projects_data AS SELECT rd.datasource, p.title, count(distinct rd.id) FROM result_datasources rd, project p, project_results pr, result r WHERE p.id=pr.id AND pr.result=rd.id AND pr.result=r.id and r.type='dataset' GROUP BY rd.datasource, p.title;
+-- CREATE TABLE chart_project_year AS SELECT p.id, r.year, count( distinct r.id) FROM result r, project_results pr, project p WHERE r.id=pr.result AND p.id=pr.id AND r.year>=p.start_year GROUP BY p.id, r.year;
+-- CREATE TABLE chart_project_license AS SELECT pr.id, r.bestlicence, count(distinct r.id) FROM result r, project_results pr WHERE r.id=pr.result AND r.type='publication' GROUP BY pr.id, r.bestlicence;
+-- CREATE TABLE chart_project_repos AS SELECT pr.id, d.name, count (distinct r.id) FROM result r, project_results pr, datasource d, datasource_results dr WHERE r.id=dr.result AND d.id=dr.id AND r.id=pr.result AND r.type='publication' GROUP BY pr.id, d.name;
+-- CREATE TABLE rd_distinct AS SELECT DISTINCT * FROM result_datasources;
+-- DROP VIEW  result_datasources;
+-- ALTER TABLE rd_distinct RENAME TO result_datasources;
+-- COMPUTE STATS chart_country_datasources;
+-- COMPUTE STATS chart_country_fp7;
+-- COMPUTE STATS chart_country_type;
+-- COMPUTE STATS chart_country_year;
+-- COMPUTE STATS chart_datasource_funders;
+-- COMPUTE STATS chart_datasource_projects_data;
+-- COMPUTE STATS chart_datasource_projects_pubs;
+-- COMPUTE STATS chart_datasource_type;
+-- COMPUTE STATS chart_datasource_year;
+-- COMPUTE STATS chart_project_license;
+-- COMPUTE STATS chart_project_repos;
+-- COMPUTE STATS chart_project_year;
+COMPUTE STATS dataset;
+COMPUTE STATS dataset_citations;
+COMPUTE STATS dataset_classifications;
+COMPUTE STATS dataset_concepts;
+COMPUTE STATS dataset_datasources;
+COMPUTE STATS dataset_languages;
+COMPUTE STATS dataset_oids;
+COMPUTE STATS dataset_pids;
+COMPUTE STATS dataset_topics;
+COMPUTE STATS datasource;
+COMPUTE STATS datasource_languages;
+COMPUTE STATS datasource_oids;
+COMPUTE STATS datasource_organizations;
+COMPUTE STATS numbers_country;
+COMPUTE STATS organization;
+COMPUTE STATS otherresearchproduct;
+COMPUTE STATS otherresearchproduct_citations;
+COMPUTE STATS otherresearchproduct_classifications;
+COMPUTE STATS otherresearchproduct_concepts;
+COMPUTE STATS otherresearchproduct_datasources;
+COMPUTE STATS otherresearchproduct_languages;
+COMPUTE STATS otherresearchproduct_oids;
+COMPUTE STATS otherresearchproduct_pids;
+COMPUTE STATS otherresearchproduct_topics;
+COMPUTE STATS project;
+COMPUTE STATS project_oids;
+COMPUTE STATS project_organizations;
+COMPUTE STATS project_results;
+COMPUTE STATS publication;
+COMPUTE STATS publication_citations;
+COMPUTE STATS publication_classifications;
+COMPUTE STATS publication_concepts;
+COMPUTE STATS publication_datasources;
+COMPUTE STATS publication_languages;
+COMPUTE STATS publication_oids;
+COMPUTE STATS publication_pids;
+COMPUTE STATS publication_topics;
+COMPUTE STATS result_organization;
+COMPUTE STATS result_projects;
+COMPUTE STATS software;
+COMPUTE STATS software_citations;
+COMPUTE STATS software_classifications;
+COMPUTE STATS software_concepts;
+COMPUTE STATS software_datasources;
+COMPUTE STATS software_languages;
+COMPUTE STATS software_oids;
+COMPUTE STATS software_pids;
+COMPUTE STATS software_topic;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step1.sql

@@ -1,11 +1,11 @@
 -- DROP database if EXISTS ${hive_db_name} cascade;
 -- CREATE database ${hive_db_name};
--- 
+--
--- CREATE TABLE ${hive_db_name}.Persons ( 
+-- CREATE TABLE ${hive_db_name}.Persons (
--- PersonID int, 
+-- PersonID int,
 -- LastName varchar(255));
--- 
+--
--- INSERT INTO ${hive_db_name}.Persons VALUES (1, "test_db_spyros_rec_111"); 
+-- INSERT INTO ${hive_db_name}.Persons VALUES (1, "test_db_spyros_rec_111");
 
-DROP database IF EXISTS ${stats_db_name} CASCADE;
+drop database if exists ${hive_db_name} cascade;
-CREATE database ${stats_db_name};
+create database ${hive_db_name};

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10.sql

@@ -0,0 +1,10 @@
+----------------------------------------------------------------
+----------------------------------------------------------------
+-- Organization table/view and Organization related tables/views
+----------------------------------------------------------------
+----------------------------------------------------------------
+DROP TABLE IF EXISTS ${hive_db_name}.organization;
+CREATE TABLE ${hive_db_name}.organization AS SELECT substr(o.id, 4) as id, o.legalname.value as name, o.country.classid as country from ${hive_source_db_name}.organization o WHERE o.datainfo.deletedbyinference=false;
+
+CREATE OR REPLACE VIEW ${hive_db_name}.organization_datasources AS SELECT organization AS id, id AS datasource FROM ${hive_db_name}.datasource_organizations;
+CREATE OR REPLACE VIEW ${hive_db_name}.organization_projects AS SELECT id AS project, organization as id FROM ${hive_db_name}.project_organizations;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10_1.sql

@@ -1,7 +0,0 @@
-----------------------------------------------------------------
-----------------------------------------------------------------
--- Organization table/view and Organization related tables/views
-----------------------------------------------------------------
-----------------------------------------------------------------
-DROP TABLE IF EXISTS ${stats_db_name}.organization;
-CREATE TABLE ${stats_db_name}.organization AS SELECT substr(o.id, 4) as id, o.legalname.value as name, o.country.classid as country from ${openaire_db_name}.organization o WHERE o.datainfo.deletedbyinference=false;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10_2.sql

@@ -1 +0,0 @@
-CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS SELECT organization AS id, id AS datasource FROM ${stats_db_name}.datasource_organizations;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10_3.sql

@@ -1 +0,0 @@
-CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS SELECT id AS project, organization as id FROM ${stats_db_name}.project_organizations;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step11.sql

@@ -3,8 +3,8 @@
 -- Tables/views from external tables/views (Fundref, Country, CountyGDP, roarmap, rndexpediture)
 ------------------------------------------------------------------------------------------------
 ------------------------------------------------------------------------------------------------
-CREATE OR REPLACE VIEW  ${stats_db_name}.fundref AS SELECT * FROM ${external_stats_db_name}.fundref;
+CREATE OR REPLACE VIEW ${hive_db_name}.fundref AS SELECT * FROM stats_ext.fundref;
-CREATE OR REPLACE VIEW  ${stats_db_name}.country AS SELECT * FROM ${external_stats_db_name}.country;
+CREATE OR REPLACE VIEW ${hive_db_name}.country AS SELECT * FROM stats_ext.country;
-CREATE OR REPLACE VIEW  ${stats_db_name}.countrygdp AS SELECT * FROM ${external_stats_db_name}.countrygdp;
+CREATE OR REPLACE VIEW ${hive_db_name}.countrygdp AS SELECT * FROM stats_ext.countrygdp;
-CREATE OR REPLACE VIEW  ${stats_db_name}.roarmap AS SELECT * FROM ${external_stats_db_name}.roarmap;
+CREATE OR REPLACE VIEW ${hive_db_name}.roarmap AS SELECT * FROM stats_ext.roarmap;
-CREATE OR REPLACE VIEW  ${stats_db_name}.rndexpediture AS SELECT * FROM ${external_stats_db_name}.rndexpediture;
+CREATE OR REPLACE VIEW ${hive_db_name}.rndexpediture AS SELECT * FROM stats_ext.rndexpediture;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12.sql

@@ -0,0 +1,44 @@
+----------------------------
+-- Post processing - Updates
+----------------------------
+
+--Datasource temporary table updates
+UPDATE ${hive_db_name}.datasource_tmp set harvested ='true' WHERE datasource_tmp.id IN (SELECT DISTINCT d.id FROM ${hive_db_name}.datasource_tmp d, ${hive_db_name}.result_datasources rd where d.id=rd.datasource);
+
+-- Project temporary table update and final project table creation with final updates that can not be applied to ORC tables
+-- UPDATE ${hive_db_name}.project_tmp SET haspubs='yes' WHERE project_tmp.id IN (SELECT pr.id FROM ${hive_db_name}.project_results pr, ${hive_db_name}.result r WHERE pr.result=r.id AND r.type='publication');
+
+
+CREATE TABLE ${hive_db_name}.project stored as parquet as
+SELECT p.id , p.acronym, p.title, p.funder, p.funding_lvl0, p.funding_lvl1, p.funding_lvl2, p.ec39, p.type, p.startdate, p.enddate, p.start_year, p.end_year, p.duration,
+CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END as haspubs,
+CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END as numpubs,
+CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END as daysforlastpub,
+CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END as delayedpubs,
+p.callidentifier, p.code
+FROM ${hive_db_name}.project_tmp p
+LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
+        FROM ${hive_db_name}.project_results pr INNER JOIN ${hive_db_name}.result r ON pr.result=r.id
+        WHERE r.type='publication'
+        GROUP BY pr.id) AS prr1 on prr1.id = p.id
+LEFT JOIN (SELECT pp.id, max(datediff(to_date(r.date), to_date(pp.enddate)) ) as daysForlastPub , count(distinct r.id) as dp
+        FROM ${hive_db_name}.project_tmp pp, ${hive_db_name}.project_results pr, ${hive_db_name}.result r
+        WHERE pp.id=pr.id AND pr.result=r.id AND r.type='publication' AND datediff(to_date(r.date), to_date(pp.enddate)) > 0
+        GROUP BY pp.id) AS prr2
+        on prr2.id = p.id;
+
+
+-- Publication temporary table updates
+UPDATE ${hive_db_name}.publication_tmp SET delayed = 'yes' WHERE publication_tmp.id IN (SELECT distinct r.id FROM ${hive_db_name}.result r, ${hive_db_name}.project_results pr, ${hive_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
+
+-- Dataset temporary table updates
+UPDATE ${hive_db_name}.dataset_tmp SET delayed = 'yes' WHERE dataset_tmp.id IN (SELECT distinct r.id FROM ${hive_db_name}.result r, ${hive_db_name}.project_results pr, ${hive_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
+
+-- Software temporary table updates
+UPDATE ${hive_db_name}.software_tmp SET delayed = 'yes' WHERE software_tmp.id IN (SELECT distinct r.id FROM ${hive_db_name}.result r, ${hive_db_name}.project_results pr, ${hive_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
+
+-- Oherresearchproduct temporary table updates
+UPDATE ${hive_db_name}.otherresearchproduct_tmp SET delayed = 'yes' WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id FROM ${hive_db_name}.result r, ${hive_db_name}.project_results pr, ${hive_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
+
+
+CREATE OR REPLACE VIEW ${hive_db_name}.project_results_publication AS SELECT result_projects.id AS result, result_projects.project AS project_results, result.date as resultdate, project.enddate as projectenddate, result_projects.daysfromend as daysfromend FROM  ${hive_db_name}.result_projects, ${hive_db_name}.result, ${hive_db_name}.project WHERE result_projects.id=result.id and result.type='publication' and project.id=result_projects.project;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12_1.sql

@@ -1,6 +0,0 @@
-----------------------------
--- Post processing - Updates
-----------------------------
-
---Datasource temporary table updates
-UPDATE ${stats_db_name}.datasource_tmp set harvested ='true' WHERE datasource_tmp.id IN (SELECT DISTINCT d.id FROM ${stats_db_name}.datasource_tmp d, ${stats_db_name}.result_datasources rd where d.id=rd.datasource);

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12_2.sql

@@ -1,2 +0,0 @@
--- Project temporary table update and final project table creation with final updates that can not be applied to ORC tables
-UPDATE ${stats_db_name}.project_tmp SET haspubs='yes' WHERE project_tmp.id IN (SELECT pr.id FROM ${stats_db_name}.project_results pr, ${stats_db_name}.result r WHERE pr.result=r.id AND r.type='publication');

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12_3.sql

@@ -1,20 +0,0 @@
-DROP TABLE IF EXISTS ${stats_db_name}.project;
-
-CREATE TABLE ${stats_db_name}.project stored as parquet as
-SELECT p.id , p.acronym, p.title, p.funder, p.funding_lvl0, p.funding_lvl1, p.funding_lvl2, p.ec39, p.type, p.startdate, p.enddate, p.start_year, p.end_year, p.duration, 
-CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END as haspubs, 
-CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END as numpubs, 
-CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END as daysforlastpub, 
-CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END as delayedpubs,
-p.callidentifier, p.code
-FROM ${stats_db_name}.project_tmp p 
-LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
-        FROM ${stats_db_name}.project_results pr INNER JOIN ${stats_db_name}.result r ON pr.result=r.id 
-        WHERE r.type='publication' 
-        GROUP BY pr.id) AS prr1 on prr1.id = p.id
-LEFT JOIN (SELECT pp.id, max(datediff(to_date(r.date), to_date(pp.enddate)) ) as daysForlastPub , count(distinct r.id) as dp
-        FROM ${stats_db_name}.project_tmp pp, ${stats_db_name}.project_results pr, ${stats_db_name}.result r 
-        WHERE pp.id=pr.id AND pr.result=r.id AND r.type='publication' AND datediff(to_date(r.date), to_date(pp.enddate)) > 0 
-        GROUP BY pp.id) AS prr2
-        on prr2.id = p.id;
-        

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12_4.sql

@@ -1,2 +0,0 @@
--- Publication temporary table updates
-UPDATE ${stats_db_name}.publication_tmp SET delayed = 'yes' WHERE publication_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12_5.sql

@@ -1,2 +0,0 @@
--- Dataset temporary table updates
-UPDATE ${stats_db_name}.dataset_tmp SET delayed = 'yes' WHERE dataset_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12_6.sql

@@ -1,2 +0,0 @@
--- Software temporary table updates
-UPDATE ${stats_db_name}.software_tmp SET delayed = 'yes' WHERE software_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12_7.sql

@@ -1,2 +0,0 @@
--- Oherresearchproduct temporary table updates
-UPDATE ${stats_db_name}.otherresearchproduct_tmp SET delayed = 'yes' WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12_8.sql

@@ -1 +0,0 @@
-CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS SELECT result_projects.id AS result, result_projects.project AS project_results, result.date as resultdate, project.enddate as projectenddate, result_projects.daysfromend as daysfromend FROM  ${stats_db_name}.result_projects, ${stats_db_name}.result, ${stats_db_name}.project WHERE result_projects.id=result.id and result.type='publication' and project.id=result_projects.project;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step13.sql

@@ -1,26 +1,39 @@
 ------------------------------------------------------------------------------------------------------
 -- Creating parquet tables from the updated temporary tables and removing unnecessary temporary tables
 ------------------------------------------------------------------------------------------------------
+DROP TABLE IF EXISTS ${hive_db_name}.datasource;
+CREATE TABLE ${hive_db_name}.datasource stored as parquet as select * from ${hive_db_name}.datasource_tmp;
 
-DROP TABLE IF EXISTS ${stats_db_name}.datasource;
+DROP TABLE IF EXISTS  ${hive_db_name}.publication;
-CREATE TABLE ${stats_db_name}.datasource stored as parquet as select * from ${stats_db_name}.datasource_tmp;
+CREATE TABLE ${hive_db_name}.publication stored as parquet as select * from ${hive_db_name}.publication_tmp;
 
-DROP TABLE IF EXISTS  ${stats_db_name}.publication;
+DROP TABLE IF EXISTS ${hive_db_name}.dataset;
-CREATE TABLE ${stats_db_name}.publication stored as parquet as select * from ${stats_db_name}.publication_tmp;
+CREATE TABLE ${hive_db_name}.dataset stored as parquet as select * from ${hive_db_name}.dataset_tmp;
 
-DROP TABLE IF EXISTS ${stats_db_name}.dataset;
+DROP TABLE IF EXISTS ${hive_db_name}.software;
-CREATE TABLE ${stats_db_name}.dataset stored as parquet as select * from ${stats_db_name}.dataset_tmp;
+CREATE TABLE ${hive_db_name}.software stored as parquet as select * from ${hive_db_name}.software_tmp;
 
-DROP TABLE IF EXISTS ${stats_db_name}.software;
+DROP TABLE IF EXISTS ${hive_db_name}.otherresearchproduct;
-CREATE TABLE ${stats_db_name}.software stored as parquet as select * from ${stats_db_name}.software_tmp;
+CREATE TABLE ${hive_db_name}.otherresearchproduct stored as parquet as select * from ${hive_db_name}.otherresearchproduct_tmp;
 
-DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct;
+DROP TABLE ${hive_db_name}.project_tmp;
-CREATE TABLE ${stats_db_name}.otherresearchproduct stored as parquet as select * from ${stats_db_name}.otherresearchproduct_tmp;
+DROP TABLE ${hive_db_name}.datasource_tmp;
+DROP TABLE ${hive_db_name}.publication_tmp;
+DROP TABLE ${hive_db_name}.dataset_tmp;
+DROP TABLE ${hive_db_name}.software_tmp;
+DROP TABLE ${hive_db_name}.otherresearchproduct_tmp;
 
-DROP TABLE ${stats_db_name}.project_tmp;
+----------------------------------------------
-DROP TABLE ${stats_db_name}.datasource_tmp;
+-- Re-creating views from final parquet tables
-DROP TABLE ${stats_db_name}.publication_tmp;
+---------------------------------------------
-DROP TABLE ${stats_db_name}.dataset_tmp;
-DROP TABLE ${stats_db_name}.software_tmp;
-DROP TABLE ${stats_db_name}.otherresearchproduct_tmp;
 
+-- Result
+CREATE OR REPLACE VIEW ${hive_db_name}.result as SELECT *, bestlicence as access_mode FROM ${hive_db_name}.publication UNION ALL SELECT *, bestlicence as access_mode FROM ${hive_db_name}.software UNION ALL SELECT *, bestlicence as access_mode FROM ${hive_db_name}.dataset UNION ALL SELECT *, bestlicence as access_mode FROM ${hive_db_name}.otherresearchproduct;
+
+-- cleanup
+drop view if exists ${hive_db_name}.delayedpubs;
+drop view if exists ${hive_db_name}.project_pub_count;
+drop view if exists ${hive_db_name}.delayedpubs;
+drop view if exists ${hive_db_name}.project_results_publication;
+
+ CREATE TABLE ${hive_db_name}.numbers_country AS SELECT org.country AS country, count(distinct rd.datasource) AS datasources, count(distinct r.id) AS publications FROM ${hive_db_name}.result r, ${hive_db_name}.result_datasources rd, ${hive_db_name}.datasource d, ${hive_db_name}.datasource_organizations dor, ${hive_db_name}.organization org WHERE r.id=rd.id AND rd.datasource=d.id AND d.id=dor.id AND dor.organization=org.id AND r.type='publication' AND r.bestlicence='Open Access' GROUP BY org.country;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step14.sql

@@ -1,7 +0,0 @@
-----------------------------------------------
--- Re-creating views from final parquet tables
----------------------------------------------
-
--- Result
-CREATE OR REPLACE VIEW ${stats_db_name}.result as SELECT *, bestlicence as access_mode FROM ${stats_db_name}.publication UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.software UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.dataset UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.otherresearchproduct;
-

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2.sql

@@ -0,0 +1,32 @@
+--------------------------------------------------------------
+--------------------------------------------------------------
+-- 2. Publication table/view and Publication related tables/views
+--------------------------------------------------------------
+--------------------------------------------------------------
+
+-- Publication temporary table
+DROP TABLE IF EXISTS ${hive_db_name}.publication_tmp;
+CREATE TABLE ${hive_db_name}.publication_tmp (id STRING,   title STRING,   publisher STRING,   journal STRING,   date STRING,   year STRING,   bestlicence STRING,   embargo_end_date STRING,   delayed BOOLEAN,   authors INT,   source STRING,   abstract BOOLEAN,   type STRING )  clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
+
+-- The following fails
+--
+INSERT INTO ${hive_db_name}.publication_tmp SELECT substr(p.id, 4) as id, p.title[0].value as title, p.publisher.value as publisher, p.journal.name as journal,
+p.dateofacceptance.value as date, date_format(p.dateofacceptance.value,'yyyy') as year, p.bestaccessright.classname as bestlicence,
+p.embargoenddate.value as embargo_end_date, false as delayed, size(p.author) as authors , concat_ws('\u003B',p.source.value) as source,
+case when size(p.description) > 0 then true else false end as abstract,
+'publication' as type
+from ${hive_source_db_name}.publication p
+where p.datainfo.deletedbyinference=false;
+
+
+CREATE TABLE ${hive_db_name}.publication_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${hive_source_db_name}.publication p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype;
+CREATE TABLE ${hive_db_name}.publication_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${hive_source_db_name}.publication p LATERAL VIEW explode(p.context) contexts as context;
+
+CREATE TABLE ${hive_db_name}.publication_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT  substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
+from ${hive_source_db_name}.publication p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN
+(SELECT substr(d.id, 4) id from ${hive_source_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
+
+CREATE TABLE ${hive_db_name}.publication_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${hive_source_db_name}.publication p;
+CREATE TABLE ${hive_db_name}.publication_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${hive_source_db_name}.publication p LATERAL VIEW explode(p.originalid) oids as ids;
+create table ${hive_db_name}.publication_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${hive_source_db_name}.publication p lateral view explode(p.pid) pids as ppid;
+create table ${hive_db_name}.publication_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${hive_source_db_name}.publication p lateral view explode(p.subject) subjects as subject;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2_1.sql

@@ -1,10 +0,0 @@
---------------------------------------------------------------
---------------------------------------------------------------
--- 2. Publication table/view and Publication related tables/views
---------------------------------------------------------------
---------------------------------------------------------------
-
--- Publication temporary table
-DROP TABLE IF EXISTS ${stats_db_name}.publication_tmp;
-
-CREATE TABLE ${stats_db_name}.publication_tmp (id STRING,   title STRING,   publisher STRING,   journal STRING,   date STRING,   year STRING,   bestlicence STRING,   embargo_end_date STRING,   delayed BOOLEAN,   authors INT,   source STRING,   abstract BOOLEAN,   type STRING )  clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2_2.sql

@@ -1,19 +0,0 @@
--- The following throws the following exception on CRN HUE Hive:
--- Error while compiling statement: FAILED: SemanticException [Error 10011]: Line 2:34 Invalid function 'date_format'
--- But runs OK on OCEAN HUE Hive
-
-INSERT INTO ${stats_db_name}.publication_tmp SELECT substr(p.id, 4) as id, p.title[0].value as title, p.publisher.value as publisher, p.journal.name as journal , 
-p.dateofacceptance.value as date, date_format(p.dateofacceptance.value,'yyyy') as year, p.bestaccessright.classname as bestlicence,
-p.embargoenddate.value as embargo_end_date, false as delayed, size(p.author) as authors , concat_ws('\u003B',p.source.value) as source,
-case when size(p.description) > 0 then true else false end as abstract,
-'publication' as type
-from ${openaire_db_name}.publication p
-where p.datainfo.deletedbyinference=false;
-
--- INSERT INTO ${hive_db_name}.publication_tmp SELECT substr(p.id, 4) as id, p.title[0].value as title, p.publisher.value as publisher, p.journal.name as journal,
--- p.dateofacceptance.value as date, date_format(p.dateofacceptance.value,'yyyy') as year, p.bestaccessright.classname as bestlicence,
--- p.embargoenddate.value as embargo_end_date, false as delayed, size(p.author) as authors , concat_ws('\u003B',p.source.value) as source,
--- case when size(p.description) > 0 then true else false end as abstract,
--- 'publication' as type
--- from openaire.publication p
--- where p.datainfo.deletedbyinference=false;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2_3.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.publication_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.publication p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2_4.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.publication_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.publication p LATERAL VIEW explode(p.context) contexts as context;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2_5.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.publication_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT  substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource from ${openaire_db_name}.publication p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN (SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2_6.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.publication_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${openaire_db_name}.publication p;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2_7.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.publication_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.publication p LATERAL VIEW explode(p.originalid) oids as ids;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2_8.sql

@@ -1 +0,0 @@
-create table ${stats_db_name}.publication_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${openaire_db_name}.publication p lateral view explode(p.pid) pids as ppid;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2_9.sql

@@ -1 +0,0 @@
-create table ${stats_db_name}.publication_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${openaire_db_name}.publication p lateral view explode(p.subject) subjects as subject;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step3.sql

@@ -1,2 +1,4 @@
+-- The following fails
+--
 -- 3. Publication_citations
-CREATE TABLE ${stats_db_name}.publication_citations AS SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.publication p lateral view explode(p.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";
+CREATE TABLE ${hive_db_name}.publication_citations AS SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result from ${hive_source_db_name}.publication p lateral view explode(p.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4.sql

@@ -0,0 +1,26 @@
+------------------------------------------------------
+------------------------------------------------------
+-- 4. Dataset table/view and Dataset related tables/views
+------------------------------------------------------
+------------------------------------------------------
+
+-- Dataset temporary table supporting updates
+DROP TABLE IF EXISTS ${hive_db_name}.dataset_tmp;
+CREATE TABLE ${hive_db_name}.dataset_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN,   authors INT,   source STRING,   abstract BOOLEAN,   type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
+
+INSERT INTO ${hive_db_name}.dataset_tmp SELECT substr(d.id, 4) as id, d.title[0].value as title, d.publisher.value as publisher, cast(null as string) as journal, d.dateofacceptance.value as date,
+date_format(d.dateofacceptance.value,'yyyy') as year, d.bestaccessright.classname as bestlicence, d.embargoenddate.value as embargo_end_date, false as delayed, size(d.author) as authors,
+concat_ws ('\u003B',d.source.value) as source,
+case when size(d.description) > 0 then true else false end as abstract, 'dataset' as type from ${hive_source_db_name}.dataset d where d.datainfo.deletedbyinference=false;
+
+
+-- Dataset_citations
+CREATE TABLE ${hive_db_name}.dataset_citations as select substr(d.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") as result from ${hive_source_db_name}.dataset d  lateral view explode(d.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";
+
+CREATE TABLE ${hive_db_name}.dataset_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${hive_source_db_name}.dataset p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype;
+CREATE TABLE ${hive_db_name}.dataset_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${hive_source_db_name}.dataset p LATERAL VIEW explode(p.context) contexts as context;
+CREATE TABLE ${hive_db_name}.dataset_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT  substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource from ${hive_source_db_name}.dataset p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN (SELECT substr(d.id, 4) id from ${hive_source_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
+CREATE TABLE ${hive_db_name}.dataset_languages AS SELECT substr(p.id, 4) as id, p.language.classname as language from ${hive_source_db_name}.dataset p;
+CREATE TABLE ${hive_db_name}.dataset_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${hive_source_db_name}.dataset p LATERAL VIEW explode(p.originalid) oids as ids;
+CREATE TABLE ${hive_db_name}.dataset_pids AS SELECT substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${hive_source_db_name}.dataset p lateral view explode(p.pid) pids as ppid;
+CREATE TABLE ${hive_db_name}.dataset_topics AS SELECT substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${hive_source_db_name}.dataset p lateral view explode(p.subject) subjects as subject;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4_1.sql

@@ -1,9 +0,0 @@
-------------------------------------------------------
-------------------------------------------------------
--- 4. Dataset table/view and Dataset related tables/views
-------------------------------------------------------
-------------------------------------------------------
-
--- Dataset temporary table supporting updates
-DROP TABLE IF EXISTS ${stats_db_name}.dataset_tmp;
-CREATE TABLE ${stats_db_name}.dataset_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN,   authors INT,   source STRING,   abstract BOOLEAN,   type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4_10.sql

@@ -1 +0,0 @@
-create table ${stats_db_name}.dataset_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${openaire_db_name}.dataset p lateral view explode(p.subject) subjects as subject;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4_2.sql

@@ -1,7 +0,0 @@
-INSERT INTO ${stats_db_name}.dataset_tmp select substr(d.id, 4) as id, d.title[0].value as title, d.publisher.value as publisher, cast(null as string) as journal, 
-d.dateofacceptance.value as date, date_format(d.dateofacceptance.value,'yyyy') as year, d.bestaccessright.classname as bestlicence,
-d.embargoenddate.value as embargo_end_date, false as delayed, size(d.author) as authors , concat_ws('\u003B',d.source.value) as source,
- case when size(d.description) > 0 then true else false end as abstract,
-'dataset' as type
-from ${openaire_db_name}.dataset d
-where d.datainfo.deletedbyinference=false;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4_3.sql

@@ -1,2 +0,0 @@
--- Dataset_citations
-Create table ${stats_db_name}.dataset_citations as select substr(d.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") as result from ${openaire_db_name}.dataset d  lateral view explode(d.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4_4.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.dataset_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4_5.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.dataset_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.context) contexts as context;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4_6.sql

@@ -1,3 +0,0 @@
-CREATE TABLE ${stats_db_name}.dataset_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT  substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource 
-from ${openaire_db_name}.dataset p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN
-(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4_7.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.dataset_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${openaire_db_name}.dataset p;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4_8.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.dataset_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.originalid) oids as ids;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4_9.sql

@@ -1 +0,0 @@
-create table ${stats_db_name}.dataset_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${openaire_db_name}.dataset p lateral view explode(p.pid) pids as ppid;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5.sql

@@ -0,0 +1,32 @@
+--------------------------------------------------------
+--------------------------------------------------------
+-- 5. Software table/view and Software related tables/views
+--------------------------------------------------------
+--------------------------------------------------------
+
+-- Software temporary table supporting updates
+DROP TABLE IF EXISTS ${hive_db_name}.software_tmp;
+CREATE TABLE ${hive_db_name}.software_tmp (   id STRING,   title STRING,   publisher STRING,   journal STRING,   date STRING,   year STRING,   bestlicence STRING,   embargo_end_date STRING,   delayed BOOLEAN,   authors INT,   source STRING,   abstract BOOLEAN,   type STRING )  clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
+INSERT INTO ${hive_db_name}.software_tmp select substr(s.id, 4) as id, s.title[0].value as title, s.publisher.value as publisher, cast(null as string) as journal,
+s.dateofacceptance.value as date, date_format(s.dateofacceptance.value,'yyyy') as year, s.bestaccessright.classname as bestlicence,
+s.embargoenddate.value as embargo_end_date, false as delayed, size(s.author) as authors , concat_ws('\u003B',s.source.value) as source,
+ case when size(s.description) > 0 then true else false end as abstract,
+'software' as type
+from ${hive_source_db_name}.software s
+where s.datainfo.deletedbyinference=false;
+
+
+-- Software_citations
+Create table ${hive_db_name}.software_citations as select substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") as result from ${hive_source_db_name}.software s  lateral view explode(s.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";
+
+CREATE TABLE ${hive_db_name}.software_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${hive_source_db_name}.software p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype;
+CREATE TABLE ${hive_db_name}.software_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${hive_source_db_name}.software p LATERAL VIEW explode(p.context) contexts as context;
+
+CREATE TABLE ${hive_db_name}.software_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT  substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
+from ${hive_source_db_name}.software p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN
+(SELECT substr(d.id, 4) id from ${hive_source_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
+
+CREATE TABLE ${hive_db_name}.software_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${hive_source_db_name}.software p;
+CREATE TABLE ${hive_db_name}.software_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${hive_source_db_name}.software p LATERAL VIEW explode(p.originalid) oids as ids;
+create table ${hive_db_name}.software_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${hive_source_db_name}.software p lateral view explode(p.pid) pids as ppid;
+create table ${hive_db_name}.software_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${hive_source_db_name}.software p lateral view explode(p.subject) subjects as subject;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5_1.sql

@@ -1,9 +0,0 @@
---------------------------------------------------------
---------------------------------------------------------
--- 5. Software table/view and Software related tables/views
---------------------------------------------------------
---------------------------------------------------------
-
--- Software temporary table supporting updates
-DROP TABLE IF EXISTS ${stats_db_name}.software_tmp;
-CREATE TABLE ${stats_db_name}.software_tmp (id STRING,   title STRING,   publisher STRING,   journal STRING,   date STRING,   year STRING,   bestlicence STRING,   embargo_end_date STRING,   delayed BOOLEAN,   authors INT,   source STRING,   abstract BOOLEAN,   type STRING )  clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5_10.sql

@@ -1 +0,0 @@
-create table ${stats_db_name}.software_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${openaire_db_name}.software p lateral view explode(p.subject) subjects as subject;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5_2.sql

@@ -1,7 +0,0 @@
-INSERT INTO ${stats_db_name}.software_tmp select substr(s.id, 4) as id, s.title[0].value as title, s.publisher.value as publisher, cast(null as string) as journal, 
-s.dateofacceptance.value as date, date_format(s.dateofacceptance.value,'yyyy') as year, s.bestaccessright.classname as bestlicence,
-s.embargoenddate.value as embargo_end_date, false as delayed, size(s.author) as authors , concat_ws('\u003B',s.source.value) as source,
- case when size(s.description) > 0 then true else false end as abstract,
-'software' as type
-from ${openaire_db_name}.software s
-where s.datainfo.deletedbyinference=false;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5_3.sql

@@ -1,2 +0,0 @@
--- Software_citations
-Create table ${stats_db_name}.software_citations as select substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") as result from ${openaire_db_name}.software s  lateral view explode(s.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5_4.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.software_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5_5.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.software_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.software p LATERAL VIEW explode(p.context) contexts as context;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5_6.sql

@@ -1,3 +0,0 @@
-CREATE TABLE ${stats_db_name}.software_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT  substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource 
-from ${openaire_db_name}.software p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN
-(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5_7.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.software_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${openaire_db_name}.software p;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5_8.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.software_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.software p LATERAL VIEW explode(p.originalid) oids as ids;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5_9.sql

@@ -1 +0,0 @@
-create table ${stats_db_name}.software_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${openaire_db_name}.software p lateral view explode(p.pid) pids as ppid;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6.sql

@@ -0,0 +1,31 @@
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+-- 6. Otherresearchproduct table/view and Otherresearchproduct related tables/views
+--------------------------------------------------------------------------------
+--------------------------------------------------------------------------------
+
+-- Otherresearchproduct temporary table supporting updates
+DROP TABLE IF EXISTS ${hive_db_name}.otherresearchproduct_tmp;
+CREATE TABLE ${hive_db_name}.otherresearchproduct_tmp (   id STRING,   title STRING,   publisher STRING,   journal STRING,   date STRING,   year STRING,   bestlicence STRING,   embargo_end_date STRING,   delayed BOOLEAN,   authors INT,   source STRING,   abstract BOOLEAN,   type STRING )  clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
+INSERT INTO ${hive_db_name}.otherresearchproduct_tmp select substr(o.id, 4) as id, o.title[0].value as title, o.publisher.value as publisher, cast(null as string) as journal,
+o.dateofacceptance.value as date, date_format(o.dateofacceptance.value,'yyyy') as year, o.bestaccessright.classname as bestlicence,
+o.embargoenddate.value as embargo_end_date, false as delayed, size(o.author) as authors , concat_ws('\u003B',o.source.value) as source,
+case when size(o.description) > 0 then true else false end as abstract,
+'other' as type
+from ${hive_source_db_name}.otherresearchproduct o
+where o.datainfo.deletedbyinference=false;
+
+-- Otherresearchproduct_citations
+Create table ${hive_db_name}.otherresearchproduct_citations as select substr(o.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") as result from ${hive_source_db_name}.otherresearchproduct o  lateral view explode(o.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";
+
+CREATE TABLE ${hive_db_name}.otherresearchproduct_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${hive_source_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype;
+CREATE TABLE ${hive_db_name}.otherresearchproduct_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${hive_source_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts as context;
+
+CREATE TABLE ${hive_db_name}.otherresearchproduct_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT  substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
+from ${hive_source_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN
+(SELECT substr(d.id, 4) id from ${hive_source_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
+
+CREATE TABLE ${hive_db_name}.otherresearchproduct_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${hive_source_db_name}.otherresearchproduct p;
+CREATE TABLE ${hive_db_name}.otherresearchproduct_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${hive_source_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids as ids;
+create table ${hive_db_name}.otherresearchproduct_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${hive_source_db_name}.otherresearchproduct p lateral view explode(p.pid) pids as ppid;
+create table ${hive_db_name}.otherresearchproduct_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${hive_source_db_name}.otherresearchproduct p lateral view explode(p.subject) subjects as subject;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6_1.sql

@@ -1,9 +0,0 @@
---------------------------------------------------------------------------------
---------------------------------------------------------------------------------
--- 6. Otherresearchproduct table/view and Otherresearchproduct related tables/views
---------------------------------------------------------------------------------
---------------------------------------------------------------------------------
-
--- Otherresearchproduct temporary table supporting updates
-DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_tmp;
-CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp (   id STRING,   title STRING,   publisher STRING,   journal STRING,   date STRING,   year STRING,   bestlicence STRING,   embargo_end_date STRING,   delayed BOOLEAN,   authors INT,   source STRING,   abstract BOOLEAN,   type STRING )  clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6_10.sql

@@ -1 +0,0 @@
-create table ${stats_db_name}.otherresearchproduct_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.subject) subjects as subject;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6_2.sql

@@ -1,7 +0,0 @@
-INSERT INTO ${stats_db_name}.otherresearchproduct_tmp select substr(o.id, 4) as id, o.title[0].value as title, o.publisher.value as publisher, cast(null as string) as journal, 
-o.dateofacceptance.value as date, date_format(o.dateofacceptance.value,'yyyy') as year, o.bestaccessright.classname as bestlicence,
-o.embargoenddate.value as embargo_end_date, false as delayed, size(o.author) as authors , concat_ws('\u003B',o.source.value) as source,
-case when size(o.description) > 0 then true else false end as abstract,
-'other' as type 
-from ${openaire_db_name}.otherresearchproduct o
-where o.datainfo.deletedbyinference=false;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6_3.sql

@@ -1,2 +0,0 @@
--- Otherresearchproduct_citations
-Create table ${stats_db_name}.otherresearchproduct_citations as select substr(o.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") as result from ${openaire_db_name}.otherresearchproduct o  lateral view explode(o.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6_4.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6_5.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts as context;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6_6.sql

@@ -1,3 +0,0 @@
-CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT  substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource 
-from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN
-(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6_7.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.otherresearchproduct_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${openaire_db_name}.otherresearchproduct p;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6_8.sql

@@ -1 +0,0 @@
-CREATE TABLE ${stats_db_name}.otherresearchproduct_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids as ids;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6_9.sql

@@ -1 +0,0 @@
-create table ${stats_db_name}.otherresearchproduct_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.pid) pids as ppid;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql

@@ -0,0 +1,21 @@
+------------------------------------------------------
+------------------------------------------------------
+-- 7. Project table/view and Project related tables/views
+------------------------------------------------------
+------------------------------------------------------
+-- Project_oids Table
+DROP TABLE IF EXISTS ${hive_db_name}.project_oids;
+CREATE TABLE ${hive_db_name}.project_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${hive_source_db_name}.project p LATERAL VIEW explode(p.originalid) oids as ids;
+-- Project_organizations Table
+DROP TABLE IF EXISTS ${hive_db_name}.project_organizations;
+CREATE TABLE ${hive_db_name}.project_organizations AS SELECT substr(r.source, 4) as id, substr(r.target, 4) AS organization from ${hive_source_db_name}.relation r WHERE r.reltype='projectOrganization';
+-- Project_results Table
+DROP TABLE IF EXISTS ${hive_db_name}.project_results;
+CREATE TABLE ${hive_db_name}.project_results AS SELECT substr(r.target, 4) as id, substr(r.source, 4) AS result from ${hive_source_db_name}.relation r WHERE r.reltype='resultProject';
+
+-- Project table
+----------------
+-- Creating and populating temporary Project table
+DROP TABLE IF EXISTS ${hive_db_name}.project_tmp;
+CREATE TABLE ${hive_db_name}.project_tmp (id STRING, acronym STRING, title STRING, funder STRING, funding_lvl0 STRING, funding_lvl1 STRING, funding_lvl2 STRING, ec39 STRING, type STRING, startdate STRING, enddate STRING, start_year STRING, end_year STRING, duration INT, haspubs STRING, numpubs INT, daysforlastpub INT, delayedpubs INT, callidentifier STRING, code STRING) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
+INSERT INTO ${hive_db_name}.project_tmp SELECT substr(p.id, 4) as id, p.acronym.value as acronym, p.title.value as title, xpath_string(p.fundingtree[0].value, '//funder/name') as funder, xpath_string(p.fundingtree[0].value, '//funding_level_0/name') as funding_lvl0, xpath_string(p.fundingtree[0].value, '//funding_level_1/name') as funding_lvl1, xpath_string(p.fundingtree[0].value, '//funding_level_2/name') as funding_lvl2, p.ecsc39.value as ec39, p.contracttype.classname as type, p.startdate.value as startdate, p.enddate.value as enddate,  date_format(p.startdate.value, 'yyyy') as start_year, date_format(p.enddate.value, 'yyyy') as end_year, 0 as duration, 'no' as haspubs, 0 as numpubs, 0 as daysforlastpub, 0 as delayedpubs, p.callidentifier.value as callidentifier, p.code.value as code from ${hive_source_db_name}.project p WHERE p.datainfo.deletedbyinference=false;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7_1.sql

@@ -1,8 +0,0 @@
-------------------------------------------------------
-------------------------------------------------------
--- 7. Project table/view and Project related tables/views
-------------------------------------------------------
-------------------------------------------------------
--- Project_oids Table
-DROP TABLE IF EXISTS ${stats_db_name}.project_oids;
-CREATE TABLE ${stats_db_name}.project_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids as ids;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7_2.sql

@@ -1,3 +0,0 @@
--- Project_organizations Table
-DROP TABLE IF EXISTS ${stats_db_name}.project_organizations;
-CREATE TABLE ${stats_db_name}.project_organizations AS SELECT substr(r.source, 4) as id, substr(r.target, 4) AS organization from ${openaire_db_name}.relation r WHERE r.reltype='projectOrganization';

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7_3.sql

@@ -1,3 +0,0 @@
--- Project_results Table
-DROP TABLE IF EXISTS ${stats_db_name}.project_results;
-CREATE TABLE ${stats_db_name}.project_results AS SELECT substr(r.target, 4) as id, substr(r.source, 4) AS result from ${openaire_db_name}.relation r WHERE r.reltype='resultProject';

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7_4.sql

@@ -1,5 +0,0 @@
--- Project table
-----------------
--- Creating and populating temporary Project table
-DROP TABLE IF EXISTS ${stats_db_name}.project_tmp;
-CREATE TABLE ${stats_db_name}.project_tmp (id STRING, acronym STRING, title STRING, funder STRING, funding_lvl0 STRING, funding_lvl1 STRING, funding_lvl2 STRING, ec39 STRING, type STRING, startdate STRING, enddate STRING, start_year STRING, end_year STRING, duration INT, haspubs STRING, numpubs INT, daysforlastpub INT, delayedpubs INT, callidentifier STRING, code STRING) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7_5.sql

@@ -1 +0,0 @@
-INSERT INTO ${stats_db_name}.project_tmp SELECT substr(p.id, 4) as id, p.acronym.value as acronym, p.title.value as title, xpath_string(p.fundingtree[0].value, '//funder/name') as funder, xpath_string(p.fundingtree[0].value, '//funding_level_0/name') as funding_lvl0, xpath_string(p.fundingtree[0].value, '//funding_level_1/name') as funding_lvl1, xpath_string(p.fundingtree[0].value, '//funding_level_2/name') as funding_lvl2, p.ecsc39.value as ec39, p.contracttype.classname as type, p.startdate.value as startdate, p.enddate.value as enddate,  date_format(p.startdate.value, 'yyyy') as start_year, date_format(p.enddate.value, 'yyyy') as end_year, 0 as duration, 'no' as haspubs, 0 as numpubs, 0 as daysforlastpub, 0 as delayedpubs, p.callidentifier.value as callidentifier, p.code.value as code from ${openaire_db_name}.project p WHERE p.datainfo.deletedbyinference=false;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8.sql

@@ -0,0 +1,24 @@
+----------------------------------------------------
+----------------------------------------------------
+-- 8. Result table/view and Result related tables/views
+----------------------------------------------------
+----------------------------------------------------
+
+-- Views on temporary tables that should be re-created in the end
+CREATE OR REPLACE VIEW ${hive_db_name}.result as SELECT *, bestlicence as access_mode FROM ${hive_db_name}.publication_tmp UNION ALL SELECT *,bestlicence as access_mode FROM ${hive_db_name}.software_tmp UNION ALL SELECT *,bestlicence as access_mode FROM ${hive_db_name}.dataset_tmp UNION ALL SELECT *,bestlicence as access_mode FROM ${hive_db_name}.otherresearchproduct_tmp;
+
+-- Views on final tables
+CREATE OR REPLACE VIEW ${hive_db_name}.result_datasources as SELECT * FROM ${hive_db_name}.publication_datasources UNION ALL SELECT * FROM ${hive_db_name}.software_datasources UNION ALL SELECT * FROM ${hive_db_name}.dataset_datasources UNION ALL SELECT * FROM ${hive_db_name}.otherresearchproduct_datasources;
+CREATE OR REPLACE VIEW ${hive_db_name}.result_citations as SELECT * FROM ${hive_db_name}.publication_citations UNION ALL SELECT * FROM ${hive_db_name}.software_citations UNION ALL SELECT * FROM ${hive_db_name}.dataset_citations UNION ALL SELECT * FROM ${hive_db_name}.otherresearchproduct_citations;
+CREATE OR REPLACE VIEW ${hive_db_name}.result_classifications as SELECT * FROM ${hive_db_name}.publication_classifications UNION ALL SELECT * FROM ${hive_db_name}.software_classifications UNION ALL SELECT * FROM ${hive_db_name}.dataset_classifications UNION ALL SELECT * FROM ${hive_db_name}.otherresearchproduct_classifications;
+CREATE OR REPLACE VIEW ${hive_db_name}.result_concepts as SELECT * FROM ${hive_db_name}.publication_concepts UNION ALL SELECT * FROM ${hive_db_name}.software_concepts UNION ALL SELECT * FROM ${hive_db_name}.dataset_concepts UNION ALL SELECT * FROM ${hive_db_name}.otherresearchproduct_concepts;
+CREATE OR REPLACE VIEW ${hive_db_name}.result_languages as SELECT * FROM ${hive_db_name}.publication_languages UNION ALL SELECT * FROM ${hive_db_name}.software_languages UNION ALL SELECT * FROM ${hive_db_name}.dataset_languages UNION ALL SELECT * FROM ${hive_db_name}.otherresearchproduct_languages;
+CREATE OR REPLACE VIEW ${hive_db_name}.result_oids as SELECT * FROM ${hive_db_name}.publication_oids UNION ALL SELECT * FROM ${hive_db_name}.software_oids UNION ALL SELECT * FROM ${hive_db_name}.dataset_oids UNION ALL SELECT * FROM ${hive_db_name}.otherresearchproduct_oids;
+CREATE OR REPLACE VIEW ${hive_db_name}.result_pids as SELECT * FROM ${hive_db_name}.publication_pids UNION ALL SELECT * FROM ${hive_db_name}.software_pids UNION ALL SELECT * FROM ${hive_db_name}.dataset_pids UNION ALL SELECT * FROM ${hive_db_name}.otherresearchproduct_pids;
+CREATE OR REPLACE VIEW ${hive_db_name}.result_topics as SELECT * FROM ${hive_db_name}.publication_topics UNION ALL SELECT * FROM ${hive_db_name}.software_topics UNION ALL SELECT * FROM ${hive_db_name}.dataset_topics UNION ALL SELECT * FROM ${hive_db_name}.otherresearchproduct_topics;
+
+DROP TABLE IF EXISTS ${hive_db_name}.result_organization;
+CREATE TABLE ${hive_db_name}.result_organization AS SELECT substr(r.target, 4) as id, substr(r.source, 4) as organization from ${hive_source_db_name}.relation r where r.reltype='resultOrganization';
+
+DROP TABLE IF EXISTS ${hive_db_name}.result_projects;
+CREATE TABLE ${hive_db_name}.result_projects AS select pr.result as id, pr.id as project, datediff(p.enddate, p.startdate) as daysfromend from ${hive_db_name}.result r join ${hive_db_name}.project_results pr on r.id=pr.result join ${hive_db_name}.project_tmp p on p.id=pr.id;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8_1.sql

@@ -1,8 +0,0 @@
-----------------------------------------------------
-----------------------------------------------------
--- 8. Result table/view and Result related tables/views
-----------------------------------------------------
-----------------------------------------------------
-
--- Views on temporary tables that should be re-created in the end
-CREATE OR REPLACE VIEW ${stats_db_name}.result as SELECT *, bestlicence as access_mode FROM ${stats_db_name}.publication_tmp UNION ALL SELECT *,bestlicence as access_mode FROM ${stats_db_name}.software_tmp UNION ALL SELECT *,bestlicence as access_mode FROM ${stats_db_name}.dataset_tmp UNION ALL SELECT *,bestlicence as access_mode FROM ${stats_db_name}.otherresearchproduct_tmp;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8_10.sql

@@ -1,2 +0,0 @@
-DROP TABLE IF EXISTS ${stats_db_name}.result_organization;
-CREATE TABLE ${stats_db_name}.result_organization AS SELECT substr(r.target, 4) as id, substr(r.source, 4) as organization from ${openaire_db_name}.relation r where r.reltype='resultOrganization';

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8_11.sql

@@ -1,2 +0,0 @@
-DROP TABLE IF EXISTS ${stats_db_name}.result_projects;
-CREATE TABLE ${stats_db_name}.result_projects AS select pr.result as id, pr.id as project, datediff(p.enddate, p.startdate) as daysfromend from ${stats_db_name}.result r join ${stats_db_name}.project_results pr on r.id=pr.result join ${stats_db_name}.project_tmp p on p.id=pr.id;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8_2.sql

@@ -1,2 +0,0 @@
--- Views on final tables
-CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources as SELECT * FROM ${stats_db_name}.publication_datasources UNION ALL SELECT * FROM ${stats_db_name}.software_datasources UNION ALL SELECT * FROM ${stats_db_name}.dataset_datasources UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8_3.sql

@@ -1 +0,0 @@
-CREATE OR REPLACE VIEW ${stats_db_name}.result_citations as SELECT * FROM ${stats_db_name}.publication_citations UNION ALL SELECT * FROM ${stats_db_name}.software_citations UNION ALL SELECT * FROM ${stats_db_name}.dataset_citations UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8_4.sql

@@ -1 +0,0 @@
-CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications as SELECT * FROM ${stats_db_name}.publication_classifications UNION ALL SELECT * FROM ${stats_db_name}.software_classifications UNION ALL SELECT * FROM ${stats_db_name}.dataset_classifications UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8_5.sql

@@ -1 +0,0 @@
-CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts as SELECT * FROM ${stats_db_name}.publication_concepts UNION ALL SELECT * FROM ${stats_db_name}.software_concepts UNION ALL SELECT * FROM ${stats_db_name}.dataset_concepts UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8_6.sql

@@ -1 +0,0 @@
-CREATE OR REPLACE VIEW ${stats_db_name}.result_languages as SELECT * FROM ${stats_db_name}.publication_languages UNION ALL SELECT * FROM ${stats_db_name}.software_languages UNION ALL SELECT * FROM ${stats_db_name}.dataset_languages UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8_7.sql

@@ -1 +0,0 @@
-CREATE OR REPLACE VIEW ${stats_db_name}.result_oids as SELECT * FROM ${stats_db_name}.publication_oids UNION ALL SELECT * FROM ${stats_db_name}.software_oids UNION ALL SELECT * FROM ${stats_db_name}.dataset_oids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8_8.sql

@@ -1 +0,0 @@
-CREATE OR REPLACE VIEW ${stats_db_name}.result_pids as SELECT * FROM ${stats_db_name}.publication_pids UNION ALL SELECT * FROM ${stats_db_name}.software_pids UNION ALL SELECT * FROM ${stats_db_name}.dataset_pids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8_9.sql

@@ -1 +0,0 @@
-CREATE OR REPLACE VIEW ${stats_db_name}.result_topics as SELECT * FROM ${stats_db_name}.publication_topics UNION ALL SELECT * FROM ${stats_db_name}.software_topics UNION ALL SELECT * FROM ${stats_db_name}.dataset_topics UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9.sql

@@ -0,0 +1,33 @@
+------------------------------------------------------------
+------------------------------------------------------------
+-- 9. Datasource table/view and Datasource related tables/views
+------------------------------------------------------------
+------------------------------------------------------------
+-- Datasource table creation & update
+-------------------------------------
+-- Creating and populating temporary datasource table
+DROP TABLE IF EXISTS ${hive_db_name}.datasource_tmp;
+create table ${hive_db_name}.datasource_tmp(`id` string, `name` string, `type` string, `dateofvalidation` string, `yearofvalidation` string, `harvested` boolean, `piwik_id` int, `latitude` string, `longitude` string, `websiteurl` string, `compatibility` string) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
+insert into ${hive_db_name}.datasource_tmp SELECT substr(d.id, 4) as id, officialname.value as name, datasourcetype.classname as type, dateofvalidation.value as dateofvalidation, date_format(d.dateofvalidation.value,'yyyy') as yearofvalidation, false as harvested, 0 as piwik_id, d.latitude.value as latitude, d.longitude.value as longitude, d.websiteurl.value as websiteurl, d.openairecompatibility.classid as compatibility
+from ${hive_source_db_name}.datasource d
+WHERE d.datainfo.deletedbyinference=false;
+
+-- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table. To see if default values are there
+-- Creating a temporary dual table that will be removed after the following insert
+CREATE TABLE ${hive_db_name}.dual(dummy char(1));
+INSERT INTO ${hive_db_name}.dual values('X');
+INSERT INTO ${hive_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`, `piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`)
+SELECT 'other', 'Other', 'Repository', NULL, NULL, false, 0, NULL, NULL, NULL, 'unknown' FROM ${hive_db_name}.dual WHERE 'other' not in (SELECT id FROM ${hive_db_name}.datasource_tmp WHERE name='Unknown Repository');
+DROP TABLE ${hive_db_name}.dual;
+
+UPDATE ${hive_db_name}.datasource_tmp SET name='Other' where name='Unknown Repository';
+UPDATE ${hive_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation='-1';
+
+DROP TABLE IF EXISTS ${hive_db_name}.datasource_languages;
+CREATE TABLE ${hive_db_name}.datasource_languages AS SELECT substr(d.id, 4) as id, langs.languages as language from ${hive_source_db_name}.datasource d LATERAL VIEW explode(d.odlanguages.value) langs as languages;
+DROP TABLE IF EXISTS ${hive_db_name}.datasource_oids;
+CREATE TABLE ${hive_db_name}.datasource_oids AS SELECT substr(d.id, 4) as id, oids.ids as oid from ${hive_source_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids as ids;
+DROP TABLE IF EXISTS ${hive_db_name}.datasource_organizations;
+CREATE TABLE ${hive_db_name}.datasource_organizations AS select substr(r.target, 4) as id, substr(r.source, 4) as organization from ${hive_source_db_name}.relation r where r.reltype='datasourceOrganization';
+
+CREATE OR REPLACE VIEW ${hive_db_name}.datasource_results AS SELECT datasource AS id, id AS result FROM ${hive_db_name}.result_datasources;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9_1.sql

@@ -1,10 +0,0 @@
-------------------------------------------------------------
-------------------------------------------------------------
--- 9. Datasource table/view and Datasource related tables/views
-------------------------------------------------------------
-------------------------------------------------------------
--- Datasource table creation & update
--------------------------------------
--- Creating and populating temporary datasource table
-DROP TABLE IF EXISTS ${stats_db_name}.datasource_tmp;
-create table ${stats_db_name}.datasource_tmp(`id` string, `name` string, `type` string, `dateofvalidation` string, `yearofvalidation` string, `harvested` boolean, `piwik_id` int, `latitude` string, `longitude` string, `websiteurl` string, `compatibility` string) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9_2.sql

@@ -1,3 +0,0 @@
-insert into ${stats_db_name}.datasource_tmp SELECT substr(d.id, 4) as id, officialname.value as name, datasourcetype.classname as type, dateofvalidation.value as dateofvalidation, date_format(d.dateofvalidation.value,'yyyy') as yearofvalidation, false as harvested, 0 as piwik_id, d.latitude.value as latitude, d.longitude.value as longitude, d.websiteurl.value as websiteurl, d.openairecompatibility.classid as compatibility
-from ${openaire_db_name}.datasource d
-WHERE d.datainfo.deletedbyinference=false;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9_3.sql

@@ -1,7 +0,0 @@
--- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table. To see if default values are there
--- Creating a temporary dual table that will be removed after the following insert
-CREATE TABLE ${stats_db_name}.dual(dummy char(1));
-INSERT INTO ${stats_db_name}.dual values('X');
-INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`, `piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`) 
-SELECT 'other', 'Other', 'Repository', NULL, NULL, false, 0, NULL, NULL, NULL, 'unknown' FROM ${stats_db_name}.dual WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name='Unknown Repository');
-DROP TABLE ${stats_db_name}.dual;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9_4.sql

@@ -1 +0,0 @@
-UPDATE ${stats_db_name}.datasource_tmp SET name='Other' where name='Unknown Repository';

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9_5.sql

@@ -1 +0,0 @@
-UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation='-1';

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9_7.sql

@@ -1,2 +0,0 @@
-DROP TABLE IF EXISTS ${stats_db_name}.datasource_oids;
-CREATE TABLE ${stats_db_name}.datasource_oids AS SELECT substr(d.id, 4) as id, oids.ids as oid from ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids as ids;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9_8.sql

@@ -1,2 +0,0 @@
-DROP TABLE IF EXISTS ${stats_db_name}.datasource_organizations;
-CREATE TABLE ${stats_db_name}.datasource_organizations AS select substr(r.target, 4) as id, substr(r.source, 4) as organization from ${openaire_db_name}.relation r where r.reltype='datasourceOrganization';

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9_9.sql

@@ -1 +0,0 @@
-CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS SELECT datasource AS id, id AS result FROM ${stats_db_name}.result_datasources;