[stats wf] indicators across stats dbs & updates in the org ids #248
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@ -309,6 +309,8 @@ case object Crossref2Oaf {
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result
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}
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def generateAuhtor(given: String, family: String, orcid: String, index: Int): Author = {
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val a = new Author
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a.setName(given)
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@ -370,10 +372,57 @@ case object Crossref2Oaf {
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case dataset: Dataset => convertDataset(dataset)
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}
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val doisReference:List[String] = for {
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JObject(reference_json) <- json \ "reference"
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JField("DOI", JString(doi_json)) <- reference_json
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} yield doi_json
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if (doisReference!= null && doisReference.nonEmpty) {
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val citation_relations:List[Relation] = generateCitationRelations(doisReference, result)
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resultList = resultList ::: citation_relations
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}
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resultList = resultList ::: List(result)
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resultList
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}
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private def createCiteRelation(source:Result, targetPid:String, targetPidType:String) :List[Relation] = {
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val targetId = IdentifierFactory.idFromPid("50",targetPidType, targetPid, true)
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val from = new Relation
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from.setSource(source.getId)
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from.setTarget(targetId)
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from.setRelType(ModelConstants.RESULT_RESULT)
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from.setRelClass(ModelConstants.CITES)
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from.setSubRelType(ModelConstants.CITATION)
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from.setCollectedfrom(source.getCollectedfrom)
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from.setDataInfo(source.getDataInfo)
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from.setLastupdatetimestamp(source.getLastupdatetimestamp)
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val to = new Relation
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to.setTarget(source.getId)
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to.setSource(targetId)
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to.setRelType(ModelConstants.RESULT_RESULT)
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to.setRelClass(ModelConstants.IS_CITED_BY)
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to.setSubRelType(ModelConstants.CITATION)
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to.setCollectedfrom(source.getCollectedfrom)
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to.setDataInfo(source.getDataInfo)
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to.setLastupdatetimestamp(source.getLastupdatetimestamp)
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List(from,to)
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}
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def generateCitationRelations(dois:List[String], result:Result):List[Relation] = {
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dois.flatMap(d => createCiteRelation(result, d, "doi"))
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}
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def mappingFunderToRelations(
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funders: List[mappingFunder],
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sourceId: String,
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@ -94,7 +94,6 @@
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"family": "Stein",
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"sequence": "first",
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"affiliation": [
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]
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},
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{
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@ -104,7 +103,6 @@
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"family": "Velzen",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -114,7 +112,6 @@
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"family": "Kowalski",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -122,7 +119,6 @@
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"family": "Franckowiak",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -132,7 +128,6 @@
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"family": "Gezari",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -142,7 +137,6 @@
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"family": "Miller-Jones",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -150,7 +144,6 @@
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"family": "Frederick",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -160,7 +153,6 @@
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"family": "Sfaradi",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -168,7 +160,6 @@
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"family": "Bietenholz",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -178,7 +169,6 @@
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"family": "Horesh",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -186,7 +176,6 @@
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"family": "Fender",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -196,7 +185,6 @@
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"family": "Garrappa",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -206,7 +194,6 @@
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"family": "Ahumada",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -214,7 +201,6 @@
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"family": "Andreoni",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -222,7 +208,6 @@
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"family": "Belicki",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -232,7 +217,6 @@
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"family": "Bellm",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -240,7 +224,6 @@
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"family": "Böttcher",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -248,7 +231,6 @@
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"family": "Brinnel",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -256,7 +238,6 @@
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"family": "Burruss",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -266,7 +247,6 @@
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"family": "Cenko",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -276,7 +256,6 @@
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"family": "Coughlin",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -286,7 +265,6 @@
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"family": "Cunningham",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -294,7 +272,6 @@
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"family": "Drake",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -302,7 +279,6 @@
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"family": "Farrar",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -310,7 +286,6 @@
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"family": "Feeney",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -318,7 +293,6 @@
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"family": "Foley",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -328,7 +302,6 @@
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"family": "Gal-Yam",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -336,7 +309,6 @@
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"family": "Golkhou",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -346,7 +318,6 @@
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"family": "Goobar",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -356,7 +327,6 @@
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"family": "Graham",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -364,7 +334,6 @@
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"family": "Hammerstein",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -374,7 +343,6 @@
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"family": "Helou",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -384,7 +352,6 @@
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"family": "Hung",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -392,7 +359,6 @@
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"family": "Kasliwal",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -402,7 +368,6 @@
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"family": "Kilpatrick",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -412,7 +377,6 @@
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"family": "Kong",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -422,7 +386,6 @@
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"family": "Kupfer",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -432,7 +395,6 @@
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"family": "Laher",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -442,7 +404,6 @@
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"family": "Mahabal",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -452,7 +413,6 @@
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"family": "Masci",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -462,7 +422,6 @@
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"family": "Necker",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -472,7 +431,6 @@
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"family": "Nordin",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -480,7 +438,6 @@
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"family": "Perley",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -490,7 +447,6 @@
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"family": "Rigault",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -500,7 +456,6 @@
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"family": "Reusch",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -508,7 +463,6 @@
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"family": "Rodriguez",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -518,7 +472,6 @@
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"family": "Rojas-Bravo",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -528,7 +481,6 @@
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"family": "Rusholme",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -538,7 +490,6 @@
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"family": "Shupe",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -548,7 +499,6 @@
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"family": "Singer",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -558,7 +508,6 @@
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"family": "Sollerman",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -566,7 +515,6 @@
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"family": "Soumagnac",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -574,7 +522,6 @@
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"family": "Stern",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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@ -582,7 +529,6 @@
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"family": "Taggart",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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||||
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@ -590,7 +536,6 @@
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"family": "van Santen",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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||||
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@ -598,7 +543,6 @@
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"family": "Ward",
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"sequence": "additional",
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"affiliation": [
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]
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},
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{
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||||
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@ -606,7 +550,6 @@
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"family": "Woudt",
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"sequence": "additional",
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"affiliation": [
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||||
]
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},
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{
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||||
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@ -616,7 +559,6 @@
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"family": "Yao",
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"sequence": "additional",
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||||
"affiliation": [
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||||
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||||
]
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||||
}
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],
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|
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@ -1412,7 +1354,6 @@
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"Nature Astronomy"
|
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],
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"original-title": [
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|
||||
],
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"language": "en",
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"link": [
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|
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@ -1448,10 +1389,8 @@
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},
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||||
"score": 1.0,
|
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"subtitle": [
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|
||||
],
|
||||
"short-title": [
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||||
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||||
],
|
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"issued": {
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"date-parts": [
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|
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@ -1480,7 +1419,6 @@
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"URL": "http://dx.doi.org/10.1038/s41550-020-01295-8",
|
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"relation": {
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"cites": [
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|
||||
]
|
||||
},
|
||||
"ISSN": [
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|
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|
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|
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@ -1,9 +1,14 @@
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package eu.dnetlib.dhp.doiboost.crossref
|
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|
||||
import eu.dnetlib.dhp.schema.common.ModelConstants
|
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import eu.dnetlib.dhp.schema.oaf._
|
||||
import eu.dnetlib.dhp.utils.DHPUtils
|
||||
import eu.dnetlib.doiboost.crossref.Crossref2Oaf
|
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import org.codehaus.jackson.map.{ObjectMapper, SerializationConfig}
|
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import org.json4s
|
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import org.json4s.JsonAST.{JField, JObject, JString}
|
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import org.json4s.{DefaultFormats, JValue}
|
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import org.json4s.jackson.JsonMethods
|
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import org.junit.jupiter.api.Assertions._
|
||||
import org.junit.jupiter.api.Test
|
||||
import org.slf4j.{Logger, LoggerFactory}
|
||||
|
|
@ -109,6 +114,44 @@ class CrossrefMappingTest {
|
|||
|
||||
}
|
||||
|
||||
|
||||
private def parseJson(input:String):JValue = {
|
||||
implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
|
||||
lazy val json: json4s.JValue = JsonMethods.parse(input)
|
||||
|
||||
json
|
||||
}
|
||||
|
||||
@Test
|
||||
def testCitationRelations():Unit = {
|
||||
val json = Source.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/doiboost/crossref/publication_license_embargo.json")).mkString
|
||||
|
||||
|
||||
assertNotNull(json)
|
||||
assertFalse(json.isEmpty)
|
||||
|
||||
val result:List[Oaf] = Crossref2Oaf.convert(json)
|
||||
|
||||
assertTrue(result.nonEmpty)
|
||||
|
||||
|
||||
val j = parseJson(json)
|
||||
|
||||
val doisReference: List[String] = for {
|
||||
JObject(reference_json) <- j \ "reference"
|
||||
JField("DOI", JString(doi_json)) <- reference_json
|
||||
} yield doi_json
|
||||
|
||||
|
||||
|
||||
val relationList:List[Relation] = result.filter(s => s.isInstanceOf[Relation]).map(r=> r.asInstanceOf[Relation]).filter(r => r.getSubRelType.equalsIgnoreCase(ModelConstants.CITATION))
|
||||
|
||||
assertNotNull(relationList)
|
||||
assertFalse(relationList.isEmpty)
|
||||
|
||||
assertEquals(doisReference.size*2, relationList.size)
|
||||
}
|
||||
|
||||
@Test
|
||||
def testEmptyTitle(): Unit = {
|
||||
val json = Source
|
||||
|
|
|
|||
Loading…
Reference in New Issue