[Graph DUMP] add code to produce the delta of new projects with respect to the previous delta/dump #221
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@ -1,8 +1,11 @@
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package eu.dnetlib.dhp.oa.graph.dump.projectssubset;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import java.util.HashMap;
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import org.apache.commons.io.FileUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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@ -15,104 +18,109 @@ import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.oa.graph.dump.funderresults.SparkResultLinkedToProject;
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import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
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import eu.dnetlib.dhp.schema.dump.oaf.graph.Project;
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public class ProjectSubsetTest {
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private static SparkSession spark;
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private static Path workingDir;
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private static final Logger log = LoggerFactory
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.getLogger(eu.dnetlib.dhp.oa.graph.dump.projectssubset.ProjectSubsetTest.class);
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private static final HashMap<String, String> map = new HashMap<>();
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files
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.createTempDirectory(
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eu.dnetlib.dhp.oa.graph.dump.projectssubset.ProjectSubsetTest.class.getSimpleName());
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log.info("using work dir {}", workingDir);
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SparkConf conf = new SparkConf();
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conf.setAppName(eu.dnetlib.dhp.oa.graph.dump.projectssubset.ProjectSubsetTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(eu.dnetlib.dhp.oa.graph.dump.projectssubset.ProjectSubsetTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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@Test
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void testAllNew() throws Exception {
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final String projectListPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/projectsubset/projectId")
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.getPath();
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/projectsubset/allnew/projects")
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.getPath();
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spark
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.read()
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.textFile(projectListPath)
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.write()
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.mode(SaveMode.Overwrite)
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.text(workingDir.toString() + "/projectIds");
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ProjectsSubsetSparkJob.main(new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-outputPath", workingDir.toString() + "/projects",
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"-sourcePath", sourcePath,
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"-projectListPath", workingDir.toString() + "/projectIds"
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<Project> tmp = sc
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.textFile(workingDir.toString() + "/projects")
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.map(item -> OBJECT_MAPPER.readValue(item, Project.class));
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Assertions.assertEquals(12, tmp.count());
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Assertions.assertEquals(2, tmp.filter(p -> p.getId().substring(3, 15).equals("aka_________")).count());
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Assertions.assertEquals(2, tmp.filter(p -> p.getId().substring(3, 15).equals("anr_________")).count());
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Assertions.assertEquals(4, tmp.filter(p -> p.getId().substring(3, 15).equals("arc_________")).count());
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Assertions.assertEquals(3, tmp.filter(p -> p.getId().substring(3, 15).equals("conicytf____")).count());
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Assertions.assertEquals(1, tmp.filter(p -> p.getId().substring(3, 15).equals("corda_______")).count());
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Assertions.assertEquals(40, sc.textFile(workingDir.toString() + "/projectIds").count());
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}
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@Test
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void testMatchOne() throws Exception {
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final String projectListPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/projectsubset/projectId")
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.getPath();
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/projectsubset/matchOne/projects")
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.getPath();
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spark
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.read()
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.textFile(projectListPath)
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.write()
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.mode(SaveMode.Overwrite)
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.text(workingDir.toString() + "/projectIds");
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ProjectsSubsetSparkJob.main(new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-outputPath", workingDir.toString() + "/projects",
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"-sourcePath", sourcePath,
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"-projectListPath", workingDir.toString() + "/projectIds"
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<Project> tmp = sc
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.textFile(workingDir.toString() + "/projects")
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.map(item -> OBJECT_MAPPER.readValue(item, Project.class));
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Assertions.assertEquals(11, tmp.count());
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Assertions.assertEquals(2, tmp.filter(p -> p.getId().substring(3, 15).equals("aka_________")).count());
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Assertions.assertEquals(2, tmp.filter(p -> p.getId().substring(3, 15).equals("anr_________")).count());
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Assertions.assertEquals(4, tmp.filter(p -> p.getId().substring(3, 15).equals("arc_________")).count());
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Assertions.assertEquals(3, tmp.filter(p -> p.getId().substring(3, 15).equals("conicytf____")).count());
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Assertions.assertEquals(0, tmp.filter(p -> p.getId().substring(3, 15).equals("corda__h2020")).count());
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Assertions.assertEquals(39, sc.textFile(workingDir.toString() + "/projectIds").count());
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}
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private static SparkSession spark;
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private static Path workingDir;
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private static final Logger log = LoggerFactory
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.getLogger(eu.dnetlib.dhp.oa.graph.dump.projectssubset.ProjectSubsetTest.class);
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files
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.createTempDirectory(
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eu.dnetlib.dhp.oa.graph.dump.projectssubset.ProjectSubsetTest.class.getSimpleName());
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log.info("using work dir {}", workingDir);
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SparkConf conf = new SparkConf();
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conf.setAppName(eu.dnetlib.dhp.oa.graph.dump.projectssubset.ProjectSubsetTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(eu.dnetlib.dhp.oa.graph.dump.projectssubset.ProjectSubsetTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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@Test
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void testAllNew() throws Exception {
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final String projectListPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/projectsubset/projectId")
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.getPath();
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/projectsubset/allnew/projects")
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.getPath();
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spark
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.read()
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.textFile(projectListPath)
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.write()
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.mode(SaveMode.Overwrite)
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.text(workingDir.toString() + "/projectIds");
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ProjectsSubsetSparkJob.main(new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-outputPath", workingDir.toString() + "/projects",
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"-sourcePath", sourcePath,
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"-projectListPath", workingDir.toString() + "/projectIds"
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<Project> tmp = sc
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.textFile(workingDir.toString() + "/projects")
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.map(item -> OBJECT_MAPPER.readValue(item, Project.class));
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Assertions.assertEquals(12, tmp.count());
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Assertions.assertEquals(2, tmp.filter(p -> p.getId().substring(3, 15).equals("aka_________")).count());
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Assertions.assertEquals(2, tmp.filter(p -> p.getId().substring(3, 15).equals("anr_________")).count());
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Assertions.assertEquals(4, tmp.filter(p -> p.getId().substring(3, 15).equals("arc_________")).count());
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Assertions.assertEquals(3, tmp.filter(p -> p.getId().substring(3, 15).equals("conicytf____")).count());
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Assertions.assertEquals(1, tmp.filter(p -> p.getId().substring(3, 15).equals("corda_______")).count());
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Assertions.assertEquals(40, sc.textFile(workingDir.toString() + "/projectIds").count());
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}
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@Test
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void testMatchOne() throws Exception {
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final String projectListPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/projectsubset/projectId")
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.getPath();
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/projectsubset/matchOne/projects")
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.getPath();
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spark
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.read()
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.textFile(projectListPath)
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.write()
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.mode(SaveMode.Overwrite)
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.text(workingDir.toString() + "/projectIds");
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ProjectsSubsetSparkJob.main(new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-outputPath", workingDir.toString() + "/projects",
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"-sourcePath", sourcePath,
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"-projectListPath", workingDir.toString() + "/projectIds"
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<Project> tmp = sc
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.textFile(workingDir.toString() + "/projects")
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.map(item -> OBJECT_MAPPER.readValue(item, Project.class));
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Assertions.assertEquals(11, tmp.count());
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Assertions.assertEquals(2, tmp.filter(p -> p.getId().substring(3, 15).equals("aka_________")).count());
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Assertions.assertEquals(2, tmp.filter(p -> p.getId().substring(3, 15).equals("anr_________")).count());
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Assertions.assertEquals(4, tmp.filter(p -> p.getId().substring(3, 15).equals("arc_________")).count());
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Assertions.assertEquals(3, tmp.filter(p -> p.getId().substring(3, 15).equals("conicytf____")).count());
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Assertions.assertEquals(0, tmp.filter(p -> p.getId().substring(3, 15).equals("corda__h2020")).count());
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Assertions.assertEquals(39, sc.textFile(workingDir.toString() + "/projectIds").count());
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}
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}
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