BipInstance #185

Merged
miriam.baglioni merged 4 commits from BipInstance into beta 2022-01-12 18:15:38 +01:00
4 changed files with 93 additions and 1 deletions

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@ -18,6 +18,7 @@ import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils;
public class Constants { public class Constants {
public static final String DOI = "doi"; public static final String DOI = "doi";
public static final String DOI_CLASSNAME = "Digital Object Identifier";
public static final String DEFAULT_DELIMITER = ","; public static final String DEFAULT_DELIMITER = ",";

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@ -33,6 +33,7 @@ import eu.dnetlib.dhp.schema.oaf.Instance;
import eu.dnetlib.dhp.schema.oaf.KeyValue; import eu.dnetlib.dhp.schema.oaf.KeyValue;
import eu.dnetlib.dhp.schema.oaf.Measure; import eu.dnetlib.dhp.schema.oaf.Measure;
import eu.dnetlib.dhp.schema.oaf.Result; import eu.dnetlib.dhp.schema.oaf.Result;
import eu.dnetlib.dhp.schema.oaf.utils.CleaningFunctions;
import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils; import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils;
import eu.dnetlib.dhp.utils.DHPUtils; import eu.dnetlib.dhp.utils.DHPUtils;
@ -95,11 +96,39 @@ public class PrepareBipFinder implements Serializable {
}).collect(Collectors.toList()).iterator()).rdd(), Encoders.bean(BipScore.class)) }).collect(Collectors.toList()).iterator()).rdd(), Encoders.bean(BipScore.class))
.map((MapFunction<BipScore, Result>) v -> { .map((MapFunction<BipScore, Result>) v -> {
Result r = new Result(); Result r = new Result();
final String cleanedPid = CleaningFunctions.normalizePidValue(DOI, v.getId());
r.setId(DHPUtils.generateUnresolvedIdentifier(v.getId(), DOI)); r.setId(DHPUtils.generateUnresolvedIdentifier(v.getId(), DOI));
Instance inst = new Instance(); Instance inst = new Instance();
inst.setMeasures(getMeasure(v)); inst.setMeasures(getMeasure(v));
inst
.setPid(
Arrays
.asList(
OafMapperUtils
.structuredProperty(
cleanedPid,
OafMapperUtils
.qualifier(
DOI, DOI_CLASSNAME,
ModelConstants.DNET_PID_TYPES,
ModelConstants.DNET_PID_TYPES),
null)));
r.setInstance(Arrays.asList(inst)); r.setInstance(Arrays.asList(inst));
r
.setDataInfo(
OafMapperUtils
.dataInfo(
false, null, true,
false,
OafMapperUtils
.qualifier(
ModelConstants.PROVENANCE_ENRICH,
null,
ModelConstants.DNET_PROVENANCE_ACTIONS,
ModelConstants.DNET_PROVENANCE_ACTIONS),
null));
return r; return r;
}, Encoders.bean(Result.class)) }, Encoders.bean(Result.class))
.write() .write()

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@ -245,6 +245,68 @@ public class ProduceTest {
.get(0) .get(0)
.getValue()); .getValue());
Assertions
.assertEquals(
"10.3390/s18072310",
tmp
.filter(row -> row.getId().equals(doi))
.collect()
.get(0)
.getInstance()
.get(0)
.getPid()
.get(0)
.getValue()
.toLowerCase());
Assertions
.assertEquals(
"doi",
tmp
.filter(row -> row.getId().equals(doi))
.collect()
.get(0)
.getInstance()
.get(0)
.getPid()
.get(0)
.getQualifier()
.getClassid());
Assertions
.assertEquals(
"Digital Object Identifier",
tmp
.filter(row -> row.getId().equals(doi))
.collect()
.get(0)
.getInstance()
.get(0)
.getPid()
.get(0)
.getQualifier()
.getClassname());
}
@Test
void produceTestMeasures() throws Exception {
final String doi = "unresolved::10.3390/s18072310::doi";
JavaRDD<Result> tmp = getResultJavaRDD();
List<StructuredProperty> mes = tmp
.filter(row -> row.getInstance() != null && row.getInstance().size() > 0)
.flatMap(row -> row.getInstance().iterator())
.flatMap(i -> i.getPid().iterator())
.collect();
Assertions.assertEquals(86, mes.size());
tmp
.filter(row -> row.getInstance() != null && row.getInstance().size() > 0)
.foreach(
e -> Assertions.assertEquals("sysimport:enrich", e.getDataInfo().getProvenanceaction().getClassid()));
} }
@Test @Test

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@ -797,7 +797,7 @@
<mockito-core.version>3.3.3</mockito-core.version> <mockito-core.version>3.3.3</mockito-core.version>
<mongodb.driver.version>3.4.2</mongodb.driver.version> <mongodb.driver.version>3.4.2</mongodb.driver.version>
<vtd.version>[2.12,3.0)</vtd.version> <vtd.version>[2.12,3.0)</vtd.version>
<dhp-schemas.version>[2.9.24]</dhp-schemas.version> <dhp-schemas.version>[2.10.24]</dhp-schemas.version>
<dnet-actionmanager-api.version>[4.0.3]</dnet-actionmanager-api.version> <dnet-actionmanager-api.version>[4.0.3]</dnet-actionmanager-api.version>
<dnet-actionmanager-common.version>[6.0.5]</dnet-actionmanager-common.version> <dnet-actionmanager-common.version>[6.0.5]</dnet-actionmanager-common.version>
<dnet-openaire-broker-common.version>[3.1.6]</dnet-openaire-broker-common.version> <dnet-openaire-broker-common.version>[3.1.6]</dnet-openaire-broker-common.version>