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tolerant parsing of OAF-store-graph mdstores #180

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claudio.atzori merged 2 commits from graph_interpretation_mdstores into beta 2022-01-04 11:32:29 +01:00
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65
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafSparkApplicationTest.java Normal file
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package eu.dnetlib.dhp.oa.graph.raw;
import static org.junit.jupiter.api.Assertions.assertFalse;
import static org.junit.jupiter.api.Assertions.assertTrue;
import java.io.IOException;
import org.apache.commons.io.IOUtils;
import org.junit.jupiter.api.Test;
public class CopyHdfsOafSparkApplicationTest {
@Test
void testIsOafType() throws IOException {
assertTrue(
CopyHdfsOafSparkApplication
.isOafType(
IOUtils
.toString(
getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/raw/publication_1.json")),
"publication"));
assertTrue(
CopyHdfsOafSparkApplication
.isOafType(
IOUtils
.toString(
getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/raw/dataset_1.json")),
"dataset"));
assertTrue(
CopyHdfsOafSparkApplication
.isOafType(
IOUtils
.toString(
getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/raw/relation_1.json")),
"relation"));
assertFalse(
CopyHdfsOafSparkApplication
.isOafType(
IOUtils
.toString(
getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/raw/publication_1.json")),
"dataset"));
assertFalse(
CopyHdfsOafSparkApplication
.isOafType(
IOUtils
.toString(
getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/raw/dataset_1.json")),
"publication"));
assertTrue(
CopyHdfsOafSparkApplication
.isOafType(
IOUtils
.toString(
getClass()
.getResourceAsStream(
"/eu/dnetlib/dhp/oa/graph/raw/publication_2_unknownProperty.json")),
"publication"));
}
}

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dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/dataset_1.json Normal file
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dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/publication_1.json Normal file
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{"author":[{"fullname":"Makkonen, Lasse","name":"Lasse","pid":[],"rank":1,"surname":"Makkonen"}],"bestaccessright":{"classid":"RESTRICTED","classname":"Restricted","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":[{"key":"10|openaire____::4692342f0992d91f9e705c26959f09e0","value":"VTT Research Information System"}],"context":[],"contributor":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Watson, Rick"}],"country":[],"coverage":[],"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"1997-01-01"},"dateofcollection":"2021-10-04T12:42:57.502Z","dateoftransformation":"2021-10-04T15:32:51.877Z","description":[],"externalReference":[],"extraInfo":[],"format":[],"fulltext":[],"id":"50|355e65625b88::0b579a3501cf87921448e0a1c7fc8353","instance":[{"accessright":{"classid":"RESTRICTED","classname":"Restricted","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"alternateIdentifier":[],"collectedfrom":{"key":"10|openaire____::4692342f0992d91f9e705c26959f09e0","value":"VTT Research Information System"},"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"1997-01-01"},"distributionlocation":"","hostedby":{"key":"10|openaire____::4692342f0992d91f9e705c26959f09e0","value":"VTT Research Information System"},"instancetype":{"classid":"0005","classname":"Contribution for newspaper or weekly magazine","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"pid":[],"refereed":{"classid":"0000","classname":"Unknown","schemeid":"dnet:review_levels","schemename":"dnet:review_levels"},"url":["https://cris.vtt.fi/en/publications/5a6fbe30-2096-4106-96f4-ed36620d3f73"]}],"language":{"classid":"eng","classname":"English","schemeid":"dnet:languages","schemename":"dnet:languages"},"lastupdatetimestamp":1635433424020,"oaiprovenance":{"originDescription":{"altered":true,"baseURL":"https%3A%2F%2Fcris.vtt.fi%2Fws%2Foai","datestamp":"2020-10-26T12:07:44Z","harvestDate":"2021-10-04T12:42:57.502Z","identifier":"oai:cris.vtt.fi:publications/5a6fbe30-2096-4106-96f4-ed36620d3f73","metadataNamespace":"http://www.openarchives.org/OAI/2.0/oai_dc/"}},"originalId":["50|355e65625b88::0b579a3501cf87921448e0a1c7fc8353","oai:cris.vtt.fi:publications/5a6fbe30-2096-4106-96f4-ed36620d3f73"],"pid":[],"publisher":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Irish Wind Energy Association"},"relevantdate":[],"resourcetype":{"classid":"UNKNOWN","classname":"Unknown","schemeid":"dnet:dataCite_resource","schemename":"dnet:dataCite_resource"},"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"source":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Makkonen , L 1997 , Calculation of ice accretion on wind turbine blades . in R Watson (ed.) , EWEC '97: European Wind Energy Conference : Proceedings of the international conference . Irish Wind Energy Association , Slane , European Wind Energy Conference EWEC '97 , Dublin , Ireland , 6/10/97 ."}],"subject":[],"title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Calculation of ice accretion on wind turbine blades"}]}

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dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/publication_2_unknownProperty.json Normal file
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{"id":"50|355e65625b88::0b579a3501cf87921448e0a1c7fc8353", "resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"}, "unknownProperty": "asdasd"}

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dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/relation_1.json Normal file
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{"source":"1a","target":"10a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
{"source":"10a","target":"1a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
{"source":"2a","target":"20a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
{"source":"20a","target":"2a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
{"source":"15a","target":"25a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
{"source":"25a","target":"15a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}