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import_new_mdstores #112

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claudio.atzori merged 7 commits from import_new_mdstores into stable_ids 2021-06-14 09:23:56 +02:00
Conversation 0 Commits 7 Files Changed 10 +13 -8
2 changed files with 13 additions and 8 deletions
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Showing only changes of commit 03a510859a - Show all commits

2
dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateHdfsMdstoresApplication.java
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@ -100,7 +100,7 @@ public class MigrateHdfsMdstoresApplication extends AbstractMigrationApplication
.map((MapFunction<Row, String>) r -> enrichRecord(r), Encoders.STRING()) .map((MapFunction<Row, String>) r -> enrichRecord(r), Encoders.STRING())
.toJavaRDD() .toJavaRDD()
.mapToPair(xml -> new Tuple2<>(new Text(UUID.randomUUID() + ":" + type), new Text(xml))) .mapToPair(xml -> new Tuple2<>(new Text(UUID.randomUUID() + ":" + type), new Text(xml)))
.coalesce(1) // .coalesce(1)
.saveAsHadoopFile(outputPath, Text.class, Text.class, SequenceFileOutputFormat.class, GzipCodec.class); .saveAsHadoopFile(outputPath, Text.class, Text.class, SequenceFileOutputFormat.class, GzipCodec.class);
/* /*

19
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java
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@ -419,10 +419,12 @@ public class MappersTest {
assertNotNull(d.getTitle()); assertNotNull(d.getTitle());
assertEquals(1, d.getTitle().size()); assertEquals(1, d.getTitle().size());
assertEquals("Validation of the Goodstrength System for Assessment of Abdominal Wall Strength in Patients With Incisional Hernia", d assertEquals(
.getTitle() "Validation of the Goodstrength System for Assessment of Abdominal Wall Strength in Patients With Incisional Hernia",
.get(0) d
.getValue()); .getTitle()
.get(0)
.getValue());
assertNotNull(d.getDescription()); assertNotNull(d.getDescription());
assertEquals(1, d.getDescription().size()); assertEquals(1, d.getDescription().size());
@ -620,7 +622,8 @@ public class MappersTest {
assertEquals("OPEN", p.getInstance().get(0).getAccessright().getClassid()); assertEquals("OPEN", p.getInstance().get(0).getAccessright().getClassid());
assertValidId(p.getInstance().get(0).getCollectedfrom().getKey()); assertValidId(p.getInstance().get(0).getCollectedfrom().getKey());
assertValidId(p.getInstance().get(0).getHostedby().getKey()); assertValidId(p.getInstance().get(0).getHostedby().getKey());
assertEquals("http://creativecommons.org/licenses/by/3.0/de/legalcode", p.getInstance().get(0).getLicense().getValue()); assertEquals(
"http://creativecommons.org/licenses/by/3.0/de/legalcode", p.getInstance().get(0).getLicense().getValue());
assertEquals(1, p.getInstance().size()); assertEquals(1, p.getInstance().size());
assertNotNull(p.getInstance().get(0).getAlternateIdentifier()); assertNotNull(p.getInstance().get(0).getAlternateIdentifier());
@ -702,12 +705,14 @@ public class MappersTest {
private List<String> vocs() throws IOException { private List<String> vocs() throws IOException {
return IOUtils return IOUtils
.readLines(GraphCleaningFunctionsTest.class.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/clean/terms.txt")); .readLines(
GraphCleaningFunctionsTest.class.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/clean/terms.txt"));
} }
private List<String> synonyms() throws IOException { private List<String> synonyms() throws IOException {
return IOUtils return IOUtils
.readLines(GraphCleaningFunctionsTest.class.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/clean/synonyms.txt")); .readLines(
GraphCleaningFunctionsTest.class.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/clean/synonyms.txt"));
} }
} }