D-Net
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dnet-hadoop
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Commit Graph

178 Commits

Author SHA1 Message Date
Claudio Atzori a8a758925e better logging, WIP: collectorWorker error reporting 2021-02-05 19:18:05 +01:00
Sandro La Bruzzo 4dae5e605d implemented messaging btween collection worker and Dnet 2021-02-04 15:51:15 +01:00
Claudio Atzori e04045089f better logging, WIP: collectorWorker error reporting 2021-02-03 17:58:22 +01:00
Claudio Atzori 53884d12c2 code formatting 2021-02-02 14:38:03 +01:00
Sandro La Bruzzo 0634674add implemented transformation test 2021-02-02 12:12:14 +01:00
Sandro La Bruzzo 6ff234d81b Implemented a first prototype of incremental harvesting and trasformation using readlock 2021-02-01 13:56:05 +01:00
Sandro La Bruzzo e423634cb6 RollBack in case of error WORKS!!! 2021-01-29 17:21:42 +01:00
Sandro La Bruzzo 0276180039 WIP mdstore 
transaction implemented on hadoop side
 2021-01-29 16:42:41 +01:00
Sandro La Bruzzo 0f8e2ecce6 Merged Datacite transfrom into this branch 2021-01-29 10:45:07 +01:00
Sandro La Bruzzo 99cf3a8ea4 Merged Datacite transfrom into this branch 2021-01-28 16:34:46 +01:00
Sandro La Bruzzo 98b9498b57 Removed old messaging system not quite used from collection and Transformation workflow 
code refactor
 2021-01-28 09:51:17 +01:00
Sandro La Bruzzo 184e7b3856 Implemented new Transformation using spark 2021-01-27 15:43:08 +01:00
Claudio Atzori 41500669e2 [BIP! Scores integration] merged missing classes from bipFinder branch 2021-01-11 14:39:47 +01:00
Claudio Atzori 03319d3bd9 Revert "Merge pull request 'Creation of the action set to include the bipFinder! score' (#62) from miriam.baglioni/dnet-hadoop:bipFinder into master" 
This reverts commit add7e1693b, reversing
changes made to f9a8fd8bbd.
 2020-12-17 12:23:58 +01:00
Miriam Baglioni 3d62d99d5d fixed issue in workflow variable 2020-12-01 15:02:49 +01:00
Miriam Baglioni 62ff4999e3 added workflow and last step of collection and save 2020-12-01 14:30:56 +01:00
Miriam Baglioni 45d06c45c7 collecting all the atoic actions for result type and save them all in the AS path 2020-12-01 14:29:18 +01:00
Miriam Baglioni db36e11912 classes test classes and resources for production of the actionset to include bipFinder score in results 2020-11-30 20:14:23 +01:00
Miriam Baglioni 43cbd62c2b added classpath.first in the configuration 2020-10-01 15:46:34 +02:00
Miriam Baglioni cd69c6b023 added dependency for the topic file path 2020-10-01 15:45:59 +02:00
Miriam Baglioni 0bf2d0db52 added to the workflow the download of the topic excel file and one property needed to get the input path of the topic file in the hdfs filesystem 2020-09-28 12:17:22 +02:00
Miriam Baglioni 782984d8e5 added needed parameter 2020-05-28 23:52:41 +02:00
Miriam Baglioni 773735f870 added the path to the file containing the projects code from the db 2020-05-28 17:30:45 +02:00
Miriam Baglioni 6a15067a64 added one step in the workflow 2020-05-28 17:30:09 +02:00
Miriam Baglioni b737ed8236 added part to read projects from the openaire db to filter out those in the csv file that are not in the db 2020-05-28 17:29:21 +02:00
Miriam Baglioni 1060977272 added fs actions to remove and the create the workingDir 2020-05-28 10:04:36 +02:00
Miriam Baglioni 1855453434 changed the outputdir of the last step 2020-05-27 17:59:36 +02:00
Miriam Baglioni 4589c428b1 generate action sets and saves them in the hdfs path for the actions sets 2020-05-21 16:30:39 +02:00
Miriam Baglioni eb0e47ba53 parameters for h2020 programme 2020-05-20 10:26:44 +02:00
Miriam Baglioni 08218d2f3f new workflow with added steps 2020-05-19 18:44:25 +02:00
Miriam Baglioni 9447d78ef3 added preparation classes 2020-05-19 18:42:50 +02:00
Miriam Baglioni f0f14caf99 removed script files for shell actions not performed 2020-05-18 13:06:16 +02:00
Miriam Baglioni 23bbac7d7c - 2020-05-18 13:05:03 +02:00
Miriam Baglioni abc45f2708 added dnet-45 HttpConnector and related Classes, produced the POJO for projects and programme 2020-05-18 13:04:06 +02:00
Miriam Baglioni 5a648016ef parameters from the GetFile class 2020-05-15 18:18:50 +02:00
Miriam Baglioni 83c262a483 workflow to download the files 2020-05-15 18:18:31 +02:00
Miriam Baglioni 22cb9e0da7 simple code to get file from URL 2020-05-15 18:18:01 +02:00
Claudio Atzori 0825321d0b improved unit tests in dhp-aggregation 2020-05-05 12:39:04 +02:00
Claudio Atzori 9147af7fed actionsets migration workflow moved in dhp-workflows/dhp-actionmanager 2020-04-20 15:24:33 +02:00
Claudio Atzori 6b5f9ca9cb raw graph creation workflow moved under dhp-graph-mapper, claims integration is included 2020-04-10 17:53:07 +02:00
Michele Artini fd57722c69 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-03-25 15:56:49 +01:00
Michele Artini 0fda2c3a30 some tests on db records 2020-03-25 09:43:58 +01:00
Michele Artini e3760c7f39 fix a bug with organization countries 2020-03-24 08:43:56 +01:00
Claudio Atzori 36236dd1c1 action migration workflow produces eu.dnetlib.dhp.schema.action.AtomicAction(s) 2020-03-19 14:00:38 +01:00
Claudio Atzori abe8fb69a2 added global properties, moved postprocessing script inside the oozie_app directory 2020-03-18 15:43:54 +01:00
Claudio Atzori 2f11e37602 fixed expansion of path variables 2020-03-17 19:41:07 +01:00
Claudio Atzori 2795b0b096 no need to mkdir a the all_entities file 2020-03-17 17:22:14 +01:00
Claudio Atzori 19746ad308 when reuseContent, reset ${workingPath}/all_entities 2020-03-17 17:17:06 +01:00
Claudio Atzori 2f0c85eeb3 updated parameters for regular_all_steps worfklow, introduced flag 'reuseContent' 2020-03-17 17:04:58 +01:00
Claudio Atzori b8290b5851 updated parameters for regular_all_steps worfklow 2020-03-17 15:45:30 +01:00
Claudio Atzori 4706f24ec5 updated parameters for regular_all_steps worfklow 2020-03-17 15:23:54 +01:00
Claudio Atzori 9c84e21b87 added workflow to migrate latest version of each actionset content from DM to OCEAN cluster, mapping the targetValues from the old protobuf data model to the dhp.OAF datamodel 2020-03-13 15:56:52 +01:00
Michele Artini b6efa9d6ab Configuration of the SequenceFile Writer 2020-03-05 15:49:14 +01:00
Michele Artini 4b29a121b0 migration using spark in step2 2020-03-02 16:12:14 +01:00
Michele Artini 5445a57102 migration using spark in step2 2020-03-02 16:11:59 +01:00
Michele Artini 93665773ea Fixed a problem with JavaRDD Union 2020-02-25 15:59:21 +01:00
Michele Artini 5d3739b5cf migration of claims 2020-02-19 15:11:17 +01:00
Michele Artini 173f1df1e5 saved a query for openaire production database 2020-02-19 10:15:08 +01:00
Sandro La Bruzzo 9a2d74ac82 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-02-19 10:13:45 +01:00
Sandro La Bruzzo e5d7cdf422 fixed sql query 2020-02-19 10:13:36 +01:00
Claudio Atzori 6a288625e5 fixed workflow outgoing node 2020-02-17 15:04:33 +01:00
Sandro La Bruzzo 76ee85141a added oozie job for DNET migration and implemented Spark job for extracting entities 2020-02-17 12:31:44 +01:00
Michele Artini cdea0dae75 bug fixing 2020-02-12 16:34:00 +01:00
Michele Artini 06c2fd6df9 bug fixing 2020-02-11 15:29:50 +01:00
Michele Artini 5fc09b179c bug fixing 2020-02-11 12:48:03 +01:00
Michele Artini 95740767e0 Ready for tests 2020-02-10 16:04:06 +01:00
Michele Artini 6bfe2dc96e partial implementation 2020-01-22 16:00:23 +01:00
Michele Artini cd114f1c3b partial update 2020-01-21 12:32:10 +01:00
Michele Artini 81f82b5d34 partial implementation of applications to migrate entities 2020-01-17 15:26:21 +01:00
Sandro La Bruzzo 5a8a323f2a dhp-collection-worker integrated in dhp-workflows 2019-10-24 11:36:59 +02:00
Claudio Atzori c7654b6fe3 renamed collection & transformation oozie workflow files 2019-10-18 09:42:20 +02:00
Claudio Atzori 27db5afdad integrating the oozie workflow build/deploy/run mechanism, took inspiration from iis 2019-10-17 18:38:30 +02:00
Sandro La Bruzzo bbb87d0e3d implemented saxonHE on transformation spark job 2019-10-10 11:33:51 +02:00
Sandro La Bruzzo 4b8c7c279d Added documentation on a class, and reused ArgumetApplicationParser on dhp-aggregation 2019-10-07 17:02:53 +02:00
Sandro La Bruzzo 403c13eebf Implemented message manager, Fixed bug on collection worker, implemented Collecion and Transform spark job 2019-04-11 15:39:29 +02:00
Sandro La Bruzzo ded6aef5e1 moved collector worker 2019-04-03 16:05:16 +02:00
Sandro La Bruzzo 12c65eab4c implemented command line 2019-03-25 15:18:31 +01:00
Sandro La Bruzzo e67d9ee1a9 added first implementation of dnet-workflows 2019-03-18 10:44:35 +01:00