D-Net
/
dnet-hadoop
14
5
Fork 11
Code Issues 14 Pull Requests 11 Projects 2 Releases 2 Wiki Activity
5,098 Commits 98 Branches 20 Tags 658 MiB
Commit Graph

4231 Commits

Author SHA1 Message Date
Michele Artini da65728afe produce a parquet file 2024-02-15 14:04:17 +01:00
Michele Artini e254720377 fixed path reports 2024-02-15 08:52:28 +01:00
Michele Artini 8d85c1e97e used a parser STAX 2024-02-15 08:21:52 +01:00
Michele Artini b42e2b4d61 fixed log class 2024-02-14 15:52:31 +01:00
Michele Artini 773346f638 increased memory 2024-02-14 14:40:27 +01:00
Michele Artini 2e11197142 removed invalid deletion 2024-02-14 11:59:30 +01:00
Michele Artini ddd6a7ceb3 minor fixes 2024-02-14 11:39:37 +01:00
Michele Artini 963a2500be new reports in hadoop job 2024-02-14 10:37:39 +01:00
Michele Artini 4b1ecad4e2 prepared a job to analyze the BASE records 2024-02-13 13:48:26 +01:00
Michele Artini dd7350ecf2 fixed a problem with xpaths 2024-02-13 08:36:42 +01:00
Michele Artini 265bfd364d refactoing 2024-02-12 15:35:36 +01:00
Michele Artini 16766c514e refactoring 2024-02-12 12:19:57 +01:00
Michele Artini 5add433b74 partial refactoring 2024-02-09 14:33:04 +01:00
Michele Artini c974c75f83 partial refactoring 2024-02-09 12:36:20 +01:00
Michele Artini c6db6335b9 prepare filtering for base import 2024-02-06 15:10:29 +01:00
Michele Artini abcd81bba0 first implementation of the collection plugin for BASE 2024-02-05 15:19:41 +01:00
Claudio Atzori f28c63d5ef [orcid enrichment] fixed directory cleanup before distcp 2024-02-05 09:44:56 +02:00
Claudio Atzori 1a8b609ed2 code formatting 2024-01-30 11:34:16 +01:00
Miriam Baglioni 4c8706efee [orcid-enrichment] change the value of parameters. 2024-01-29 18:21:36 +01:00
Claudio Atzori 4d0c59669b merged changes from beta 2024-01-26 16:08:54 +01:00
Claudio Atzori ce3200263e Merge branch 'beta' into crossref_missing_author_fix 2024-01-26 15:57:04 +01:00
Sandro La Bruzzo e889808daa Fixed problem on missing author in crossref Mapping 2024-01-26 12:19:04 +01:00
Antonis Lempesis a7115cfa9e max mem of joins (hive.mapjoin.followby.gby.localtask.max.memory.usage) now 80%, up from 55%. 2024-01-25 15:13:16 +01:00
Claudio Atzori 9b13c22e5d [graph provision] retrieve all the context information by adding all=true to the requests issued to thr API 2024-01-23 15:36:08 +01:00
Claudio Atzori f87f3a6483 [graph provision] updated param specification for the XML converter job 2024-01-23 08:54:37 +01:00
Claudio Atzori 6fd25cf549 code formatting 2024-01-23 08:47:12 +01:00
Claudio Atzori f76852f385 Merge branch 'beta' into update_pivots_table 2024-01-22 16:37:22 +01:00
Claudio Atzori 1c6db320f4 [graph provision] obtain context info from the context API instead from the ISLookUp service 2024-01-22 15:53:17 +01:00
Claudio Atzori 2655eea5bc [orcid enrichment] drop paths before copying the non-modifyed contents 2024-01-19 16:28:05 +01:00
Claudio Atzori c6b3401596 increased shuffle partitions for publications in the country propagation workflow 2024-01-19 10:15:39 +01:00
Miriam Baglioni bcc0a13981 [enrichment single step] adding <end> element in wf definition 2024-01-18 17:39:14 +01:00
Miriam Baglioni 6af536541d [enrichment single step] moving parameter file in correct location 2024-01-18 15:35:40 +01:00
Miriam Baglioni a12a3eb143 - 2024-01-18 15:18:10 +01:00
Miriam Baglioni 82e9e262ee [enrichment single step] remove parameter from execution 2024-01-17 17:38:03 +01:00
Miriam Baglioni 67ce2d54be [enrichment single step] refactoring to fix issues in disappeared result type 2024-01-17 16:50:00 +01:00
Miriam Baglioni 59eaccbd87 [enrichment single step] refactoring to fix issue in disappeared result type 2024-01-15 17:49:54 +01:00
Giambattista Bloisi 21a14fcd80 Reusable RunSQLSparkJob for executing SQL in Spark through Oozie Spark Actions 
Implements pivots table update oozie workflow
 2024-01-15 10:18:14 +01:00
Miriam Baglioni f612125939 fix issue on FoS integration. Removing the null values from FoS 2024-01-12 10:20:28 +01:00
Claudio Atzori cb9e739484 Merge branch 'beta' into resource_types 2024-01-11 16:29:41 +01:00
Claudio Atzori 2753044d13 refined mapping for the extraction of the original resource type 2024-01-11 16:28:26 +01:00
Giambattista Bloisi 3c66e3bd7b Create dedup record for "merged" pivots 
Do not create dedup records for group that have more than 20 different acceptance date
 2024-01-10 22:59:52 +01:00
Giambattista Bloisi 10e135db1e Use dedup_wf_002 in place of dedup_wf_001 to make explicit a different algorithm has been used to generate those kind of ids 2024-01-10 22:59:52 +01:00
Giambattista Bloisi 831cc1fdde Generate "merged" dedup id relations also for records that are filtered out by the cut parameters 2024-01-10 22:59:52 +01:00
Giambattista Bloisi 1287315ffb Do no longer use dedupId information from pivotHistory Database 2024-01-10 22:59:52 +01:00
Giambattista Bloisi 02636e802c SparkCreateSimRels: 
- Create dedup blocks from the complete queue of records matching cluster key instead of truncating the results
- Clean titles once before clustering and similarity comparisons
- Added support for filtered fields in model
- Added support for sorting List fields in model
- Added new JSONListClustering and numAuthorsTitleSuffixPrefixChain clustering functions
- Added new maxLengthMatch comparator function
- Use reduced complexity Levenshtein with threshold in levensteinTitle
- Use reduced complexity AuthorsMatch with threshold early-quit
- Use incremental Connected Component to decrease comparisons in similarity match in BlockProcessor
- Use new clusterings configuration in Dedup tests

SparkWhitelistSimRels: use left semi join for clarity and performance

SparkCreateMergeRels:
- Use new connected component algorithm that converge faster than Spark GraphX provided algorithm
- Refactored to use Windowing sorting rather than groupBy to reduce memory pressure
- Use historical pivot table to generate singleton rels, merged rels and keep continuity with dedupIds used in the past
- Comparator for pivot record selection now uses "tomorrow" as filler for missing or incorrect date instead of "2000-01-01"
- Changed generation of ids of type dedup_wf_001 to avoid collisions

DedupRecordFactory: use reduceGroups instead of mapGroups to decrease memory pressure
 2024-01-10 22:59:52 +01:00
Miriam Baglioni e711a05229 fixed conflicts 2024-01-10 11:03:42 +01:00
Miriam Baglioni 71d6f30711 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2024-01-10 10:59:58 +01:00
Miriam Baglioni cb14470ba6 added properties file in the forlder for the workflow of result to organization from inst repo propagation. Changes the path in the classes implementing the propagation 2023-12-22 14:50:05 +01:00
Miriam Baglioni 9f966b59d4 added properties file in the forlder for the workflow of result to community from semrel propagation. Changes the path in the classes implementing the propagation 2023-12-22 14:11:47 +01:00
Miriam Baglioni 2f3b5a133d added properties file in the forlder for the workflow of result to community from organization propagation. Changes the path in the classes implementing the propagation 2023-12-22 13:56:40 +01:00