Claudio Atzori
2a233a89aa
[graph grouping] added isLookupUrl to the workflow definition, passed to the grouping spark aciton
2023-12-03 13:32:52 +01:00
Claudio Atzori
622fafbd2e
Merge branch 'beta' into orcid_import
2023-12-01 12:28:14 +01:00
bf0fd27c36
Removed unused function
...
Applied PR Comment of Giambattista in the PR
2023-12-01 12:16:42 +01:00
cdfb7588dd
code formatting
2023-11-30 15:31:42 +01:00
5e22b67b8a
Merge remote-tracking branch 'origin/beta' into orcid_import
2023-11-30 15:27:46 +01:00
f718caaac9
Added copy of the untouched entities of the graph
2023-11-30 14:51:00 +01:00
7b5e04f37e
removed Orcid intersection on DOIBoost
2023-11-30 14:36:50 +01:00
Claudio Atzori
4e1aac2e2f
resolved conflict in pom.xml before applying the changes from [COAR based resource types & Irish tender] #350
2023-11-29 14:37:52 +01:00
279100fa52
added test
2023-11-29 11:17:58 +01:00
59111713fa
added comment
2023-11-28 09:00:48 +01:00
6f4d0c05ea
Implemented Author MErger for ORCID that takes in account the case when name and surname are swapped
2023-11-28 08:43:56 +01:00
34a4b3cbdf
Implemented ORCID Enrichment
2023-11-24 12:39:58 +01:00
Claudio Atzori
2c77638bf5
Merge branch 'beta' into cleaning_8898
2023-11-22 14:00:10 +01:00
Claudio Atzori
11a1207f9c
[graph cleaning] applying coar based vocabularies in bulk
2023-11-22 12:22:14 +01:00
Claudio Atzori
262d7c581b
[graph cleaning] implemented further suggestions from https://support.openaire.eu/issues/8898
2023-10-31 14:34:10 +01:00
Claudio Atzori
b3a61ea955
Merge branch 'beta' into url_validation
2023-10-25 14:22:56 +02:00
Claudio Atzori
7fc621cdec
added defaults to the graph resolution workflow config-default.xml
2023-10-20 22:28:12 +02:00
Claudio Atzori
2b9d0416ec
[graph raw] URL Validator to accept double slashes
2023-10-19 16:26:37 +02:00
Claudio Atzori
6dfcd0c9a2
[raw graph] mapping original resource types
2023-10-16 12:57:18 +02:00
Claudio Atzori
54fbf09ac6
[raw graph] WIP: mapping original resource types
2023-10-16 08:57:47 +02:00
Claudio Atzori
554551682d
[raw graph] adopting the new COAR based vocabularies for the resource typing
2023-10-11 16:09:19 +02:00
Claudio Atzori
eed9fe0902
code formatting
2023-10-06 12:31:17 +02:00
Claudio Atzori
dc86018a5f
Merge branch 'merge_entities_job' into beta
2023-10-02 11:24:48 +02:00
Alessia Bardi
0935d7757c
Use v5 of the UNIBI Gold ISSN list in test
2023-09-20 15:41:35 +02:00
Alessia Bardi
cc7204a089
tests for d4science catalog
2023-09-20 15:38:32 +02:00
Claudio Atzori
5b06c9d06f
[graph raw] datainfo.invisible set as true only for entities
2023-09-04 15:15:24 +02:00
Giambattista Bloisi
6cc7d8ca7b
GroupEntities and DispatchEntites are now merged in GroupEntitiesSparkJob
2023-08-30 10:43:31 +02:00
Claudio Atzori
bf35280ea6
code formatting
2023-08-29 11:11:00 +02:00
Giambattista Bloisi
95cd2b9b1e
Make filterInvisible a mandatory parameter of DispathEntitiesSparkJob
...
Make filterInvisible a mandatory parameter of both dedup/consistency and graph/group oozie workflows
2023-08-10 11:53:48 +02:00
Giambattista Bloisi
fab9920271
DispatchEntitiesSparkJob: manage all entity types together, support filtering by dataInfo.invisible flag
2023-08-09 15:41:43 +02:00
Miriam Baglioni
c25ac21e5e
Merge pull request 'graph cleaning, suggestions from ticket 8898' ( #325 ) from cleaning_8898 into beta
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Reviewed-on: #325
2023-08-08 11:14:19 +02:00
Claudio Atzori
11ffb9bd68
rule out records with NULL dataInfo
2023-07-31 12:35:33 +02:00
Claudio Atzori
270df939c4
partial implementation of the suggestions from https://support.openaire.eu/issues/8898
2023-07-25 17:29:50 +02:00
Giambattista Bloisi
e64c2854a3
Refactor Dedup process to use Spark Dataframe API and intermediate representation with Row interface
...
JsonPath cache contention fixed by using a ConcurrentHashMap
Blacklist filtering performance improvement
Minor performance improvements when evaluating similarity
Sorting in clustered elements is deterministic (by ordering and identity field, instead of ordering field only)
2023-07-24 15:36:24 +02:00
Giambattista Bloisi
bb5b845e3c
Use scala.binary.version property to resolve scala maven dependencies
...
Ensure consistent usage of maven properties
Profile for compiling with scala 2.12 and Spark 3.4
2023-07-24 11:13:48 +02:00
Claudio Atzori
b76a47b103
[aggregator graph] added column alias when mapping organization PIDs from the OpenOrgs database
2023-06-13 11:38:10 +02:00
Claudio Atzori
ad04f14b81
Merge branch 'beta' into distinct_pids_from_openorgs_beta
2023-06-12 09:58:21 +02:00
Claudio Atzori
e1409ffe80
update sql query to return distinct pids
2023-06-12 09:47:45 +02:00
Claudio Atzori
e45777e7e1
[aggregator graph] added validation for URLs mapped from oaf:fulltext
2023-05-26 11:33:42 +02:00
Claudio Atzori
8acad52a0c
Merge branch 'beta' into apc_affiliation
2023-05-15 15:47:33 +02:00
Claudio Atzori
8a463cc3e8
fixed organization id created when mapping APC affiliations. Factored out ROR constants in dhp-common
2023-05-15 15:44:46 +02:00
Miriam Baglioni
99ac5bab46
added check to avoid NPE when checking the organization country
2023-05-04 19:38:39 +02:00
Claudio Atzori
d8882c4481
extended mapping applied to datacite records to produce affiliations using the ROR ids. Inc ase of APCs it includes the amount and the currently in the relation
2023-05-02 11:56:51 +02:00
Claudio Atzori
851f664bd9
Merge branch 'beta' into graph_cleaning_refactoring
2023-05-02 09:55:40 +02:00
Claudio Atzori
a2dcb06daf
added eoscifguidelines in the result view; removed compute statistics statements
2023-04-11 10:43:32 +02:00
Claudio Atzori
864f4051d3
[graph cleaning] added missing case
2023-04-05 11:35:47 +02:00
Claudio Atzori
dead87917f
[graph cleaning] cleanup
2023-04-04 13:13:43 +02:00
Claudio Atzori
2a6ba29b64
[graph cleaning] unit tests & cleanup
2023-04-04 12:34:51 +02:00
Claudio Atzori
b502f86523
fixed input path supplemented to GetDatasourceFromCountry; adjusted the various spark.sql.shuffle.partitions
2023-03-24 13:09:12 +01:00
Claudio Atzori
c07857fa37
[graph cleaning] unit tests & cleanup
2023-03-23 15:57:47 +01:00
Claudio Atzori
90e61a8aba
[graph cleaning] WIP: refactoring of the cleaning stages, unit tests
2023-03-23 15:03:26 +01:00
Claudio Atzori
488d9a5eaa
[graph cleaning] WIP: refactoring of the cleaning stages, unit tests
2023-03-23 10:41:13 +01:00
Claudio Atzori
4f5ba0ed52
[graph cleaning] WIP: refactoring of the cleaning stages, unit tests
2023-03-21 14:41:20 +01:00
Claudio Atzori
6d3d18d8b5
[graph cleaning] WIP: refactoring of the cleaning stages
2023-03-16 17:23:36 +01:00
Claudio Atzori
518618f1a9
[graph cleaning] avoid to overwrite the subject class to 'keyword' for those with provenance 'subject:fos'
2023-03-14 15:22:47 +01:00
Claudio Atzori
e28d395e87
[aggregator graph] using dedicated path to sync claims, adjusted paths with wildcards
2023-03-08 21:16:52 +01:00
Claudio Atzori
5b8fd37314
[aggregator graph] using dedicated path to sync claims
2023-03-08 15:28:14 +01:00
Claudio Atzori
7fd89566c2
[aggregator graph] handle paths including wildcards
2023-03-08 12:43:00 +01:00
Claudio Atzori
8ec0d62d91
pre-group the records in each table before joning the contents from BETA and PROD together
2023-03-02 14:49:19 +01:00
Claudio Atzori
6f488547a7
ignore non processable records
2023-03-01 14:49:51 +01:00
Claudio Atzori
7d263f265e
adjusted logs
2023-03-01 11:58:07 +01:00
Claudio Atzori
9c59dac859
followup changes reorganising the mdstore synchronisation mechanism
2023-03-01 10:16:20 +01:00
78e51c182a
Added missing parametero to raw all workflow
2023-02-28 10:16:01 +01:00
Michele Artini
fddcf701e9
updated the order of the compatibilities
2023-02-22 12:07:09 +01:00
8920932dd8
Code formatted
2023-02-08 11:34:18 +01:00
6c81a161d2
Merge remote-tracking branch 'origin/beta' into 8231-mdstore-synch-improve
2023-02-08 10:29:09 +01:00
Miriam Baglioni
d6895f0387
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2023-01-09 17:28:38 +01:00
3c9826f186
updated lines function to it's implementation linesWithSeparators.map(l => l.stripLineEnd) in this way we force scala plugin compiler to consider this pipeline scala code and not java.string.lines() pipeline
2022-12-21 11:21:17 +01:00
Miriam Baglioni
8685eaa706
[Clean Country] added test to verify remove of country
2022-12-16 15:31:25 +01:00
Miriam Baglioni
dc0ec88a58
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2022-12-16 13:18:32 +01:00
Miriam Baglioni
d791840b82
[Clean Country] added test to verify remove of country:
2022-12-16 13:18:29 +01:00
Claudio Atzori
7b80b24f82
[cleaning] country cleaning must use both PID and AlternateIdentifier fields
2022-12-15 14:49:04 +01:00
Claudio Atzori
b8bafab8a0
[cleaning] improved vocabulary based mapping, specialization for the strict vocab cleaning
2022-12-12 14:43:03 +01:00
5e4866d033
implemented synch for single mdstore
2022-12-12 11:29:46 +01:00
Claudio Atzori
c18b8048c3
[cleaning] avoid NPE
2022-12-10 11:41:38 +01:00
Claudio Atzori
8b44afe5e5
[cleaning] avoid NPE
2022-12-09 15:44:57 +01:00
Claudio Atzori
389dd25430
[cleaning] avoid NPE
2022-12-08 18:40:48 +01:00
Claudio Atzori
730228d73d
[cleaning] align wf parameter names in test
2022-12-08 18:40:22 +01:00
Claudio Atzori
2094fa6db0
[cleaning] align wf parameter names
2022-12-08 17:22:26 +01:00
Miriam Baglioni
a485a94956
[Cleaning] fixed parameter name in property file
2022-12-08 16:59:34 +01:00
Miriam Baglioni
3d99b78d94
[Cleaning] fixed error in parameter (workingPath to workingDir)
2022-12-08 10:25:02 +01:00
5a48a2fb18
implemented synch for single mdstore
2022-12-01 11:34:43 +01:00
Claudio Atzori
8e3edba318
[graph cleaning] testing the collectedfron and hostedby patch procedure
2022-11-29 16:07:09 +01:00
Claudio Atzori
58c05731f9
[graph cleaning] WIP: testing the collectedfron and hostedby patch procedure
2022-11-29 11:21:51 +01:00
Claudio Atzori
11695ba649
[graph cleaning] patch also the result's collectedfrom and hostedby datasource name according to the datasource master-duplicate mapping
2022-11-28 10:18:43 +01:00
Claudio Atzori
24ef301cc1
[graph cleaning] patch the result's collectedfrom and hostedby identifiers according to the datasource master-duplicate mapping
2022-11-28 09:54:18 +01:00
Alessia Bardi
3c08269a4d
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2022-11-22 17:31:00 +01:00
Alessia Bardi
2687fc9f73
tests for EOSC Future review - ROhub
2022-11-22 17:30:56 +01:00
Claudio Atzori
7c3390ac10
Merge branch 'beta' into eoscifguidelines-from-mdstores
2022-11-07 12:18:40 +01:00
2b9a20a4a3
Changed the way Scholexplorer filter the relationships, I found that filter all relation coming from openCitation is wrong, because we loose a lot of relation than intersect OpenCitation, but they don't come only from there
2022-10-24 12:53:47 +02:00
Alessia Bardi
208ed32315
fixed xpath for semantic relation
2022-10-23 18:18:13 +02:00
Alessia Bardi
ee759ac92d
file format after mvn compile
2022-10-23 18:09:47 +02:00
Alessia Bardi
31a10f000b
Map the field oaf:eoscifguidelines from mdstores. Currently we can find it in ROHub metadata
2022-10-23 18:05:37 +02:00
Claudio Atzori
ae7cd0735a
[graph2hive] more partitions
2022-10-14 15:47:58 +02:00
Claudio Atzori
b47aaf4dd1
[cleaning] subjects declared as belonging to specific vocabularies whose values are not found in the vocab are set to type keyword
2022-10-13 11:23:43 +02:00
Claudio Atzori
6163ecbf63
[cleaning] renamed parameters in wf action
2022-10-11 11:20:03 +02:00
Claudio Atzori
b301e9fdff
[cleaning] renamed action name/description
2022-10-11 11:08:52 +02:00
Claudio Atzori
ece40adc09
[cleaning] fixing NPE in the country cleaning phase
2022-10-11 10:10:20 +02:00
Claudio Atzori
8d97949316
[cleaning] fixed loop in wf nodes
2022-10-07 09:52:45 +02:00
Alessia Bardi
49360770d7
map w3id as instance url
2022-09-28 14:16:39 +02:00
Claudio Atzori
Sandro La Bruzzo
Alessia Bardi
Giambattista Bloisi
Miriam Baglioni
Michele Artini