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Commit Graph

105 Commits

Author SHA1 Message Date
Miriam Baglioni c4b18e6ccb changed the download.sh, added skip step to allow to not execute one phase and changed the workflow sequence of steps 2021-07-16 15:01:25 +02:00
Miriam Baglioni acd6056330 added shell action to automatically download the new dump and put it in a specified hdfs location 2021-07-16 12:47:10 +02:00
Claudio Atzori bf9e0d2d4f Merge pull request 'orcid-no-doi' (#123) from enrico.ottonello/dnet-hadoop:orcid-no-doi into beta 
Reviewed-on: #123
 2021-07-15 17:59:41 +02:00
Sandro La Bruzzo 3d8e2aa146 Code refactor: 
- removed old workflows in doiboost
 - splitted workflow of doiboost in preprocess and process
 2021-07-14 14:37:06 +02:00
Sandro La Bruzzo c35c117601 fixed process doiboost workflow: 
- splitted OrcidToOAF into two phase preprocess and process
- updated workflow used in production
 2021-07-14 12:48:01 +02:00
Miriam Baglioni 13c96622c9 - 2021-06-18 09:45:16 +02:00
Miriam Baglioni 3585e53da3 changed to split in two steps the generation of the crossref dataset 2021-06-18 09:41:23 +02:00
Miriam Baglioni 95885bcf12 forces executor Executor memory and driver executor memory to be 7G (trying to avoid OOM) 2021-06-16 10:17:52 +02:00
Miriam Baglioni 2550a73981 - 2021-06-16 10:04:41 +02:00
Miriam Baglioni 1c47c0d786 modified the number of executors trying to avoid OOM exception 2021-06-15 21:05:39 +02:00
Miriam Baglioni 7deac55138 added one option for resume from in the wf 2021-06-15 18:38:20 +02:00
Miriam Baglioni 66e7ef892f changed the parameter name 2021-06-15 11:08:54 +02:00
Miriam Baglioni 4f47ad0891 no need to rename the folders, just write in overwrite mode, so I changed the name of the output folder 2021-06-15 09:28:31 +02:00
Miriam Baglioni 6ebc236657 added needed property: outputPath 2021-06-15 09:23:24 +02:00
Miriam Baglioni f7379255b6 changed the workflow to extract info from the dump 2021-06-15 09:22:54 +02:00
Miriam Baglioni 8873e6b6d1 workflow and parameter 2021-06-14 10:15:57 +02:00
Miriam Baglioni 0f1acdf6b6 workflow and parameter 2021-06-14 10:08:55 +02:00
Enrico Ottonello c537986b7c deleted folders with merged data immediately before merge phases 2021-04-28 11:25:25 +02:00
Claudio Atzori e5abbec2ba [orcid] download of the lambda file defined in a script 2021-04-22 11:22:10 +02:00
Claudio Atzori 55964cbd81 [orcid] large oozie workflow cleanup; updated workflow for the orcidnodoi actionset creation 2021-04-22 10:18:09 +02:00
Claudio Atzori 52244f813a merging from enrico.ottonello/dnet-hadoop:orcid-no-doi 2021-04-21 12:24:09 +02:00
Enrico Ottonello 27068aacd1 wf to move orcid-no-doi dataset on the folder ready the import 2021-04-16 17:17:47 +02:00
Sandro La Bruzzo 67085da305 fixed NPE 2021-04-16 11:05:58 +02:00
Sandro La Bruzzo 479abd10cb Add into ORCID workflow a method that extracts orcid directly to the dump generated by Enrico 2021-04-13 17:47:43 +02:00
Claudio Atzori ee34cc51c3 [ORCID-no-doi] integrating PR#98 #98 2021-04-01 17:07:49 +02:00
Enrico Ottonello ebd67b8c8f removed duplicates orcid data on authors set 2021-03-25 11:20:52 +01:00
Sandro La Bruzzo cc5bbafa5d some fix to make workflows runs 2021-03-17 12:12:56 +01:00
Enrico Ottonello 70cb100647 added updating last orcid dataset folders after completion 2021-03-01 10:17:04 +01:00
Enrico Ottonello bd3b16402b added result typologies 2021-03-01 10:16:02 +01:00
Enrico Ottonello 53d7023460 dateOfCollection taken from orcid last_update.txt on hdfs; cleaned wf parameters 2021-02-25 18:43:29 +01:00
Enrico Ottonello d43ea88caf aligned orcid result typologies with openaire vocabulary 2021-02-25 15:02:10 +01:00
Enrico Ottonello 975823b968 data from last updated orcid 2021-02-23 15:35:04 +01:00
Enrico Ottonello c238561001 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2021-02-04 10:44:21 +01:00
Enrico Ottonello 465ce39f75 job execution now based on file last_update.txt on hdfs 2021-02-04 10:44:04 +01:00
Claudio Atzori ab2fe9266a [DOIBoost] minor fixes in workflow definition 2021-01-05 10:26:39 +01:00
Claudio Atzori 7c722f3fdc [DOIBoost] fixed typo 2021-01-05 10:25:54 +01:00
Claudio Atzori 8879704ba0 [DOIBoost] configurable ES server url and index name in crossref importer 2021-01-05 10:00:13 +01:00
Sandro La Bruzzo e79445a8b4 minor fix for claudio polemica 2021-01-04 17:39:25 +01:00
Sandro La Bruzzo 8765020b85 minor fix 2021-01-04 17:37:08 +01:00
Sandro La Bruzzo b0dc92786f defined a single oozie workflow for the generation of doiboost 2021-01-04 17:01:35 +01:00
Enrico Ottonello b2de598c1a all actions from download lambda file to merge updated data into one wf 2020-12-15 10:42:55 +01:00
Enrico Ottonello efe4c2a9c5 authors and works are now updated in two separate spark actions of the wf 2020-12-12 02:06:21 +01:00
Enrico Ottonello 858efbfad1 fix dataset creation for downloaded works 2020-12-11 16:49:54 +01:00
Enrico Ottonello 2233750a37 original orcid xml data are stored in a field of the class that models orcid data 2020-12-09 09:45:19 +01:00
Sandro La Bruzzo 302baab67b fixed doiboost mapping and workflows 2020-12-07 19:59:33 +01:00
Enrico Ottonello 5c65e602d3 wf doi_authors generates one json data foreach row 2020-12-07 15:28:10 +01:00
Enrico Ottonello fa1855a4b8 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-12-07 11:02:59 +01:00
Enrico Ottonello b1b589ada1 wf to generate orcid dataset 2020-12-07 11:02:32 +01:00
Sandro La Bruzzo b31dd126fb fixed crossref workflow added common ORCID Class 2020-12-07 10:42:38 +01:00
Enrico Ottonello 8812ab65e1 completed download function to wf; added accumulators 2020-12-04 21:13:49 +01:00