 Claudio Atzori
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4bcad1c9c3
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Merge branch 'graph_cleaning'
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2020-06-12 11:40:25 +02:00 |
 Alessia Bardi
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e79943965b
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Fixes #5604: field oamandatepublications in XML
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2020-06-11 12:49:31 +02:00 |
|
Claudio Atzori
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67c7b31ba6
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Merge branch 'master' into graph_cleaning
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2020-06-10 15:00:35 +02:00 |
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Claudio Atzori
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ce12f236bb
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disabled test, need to need to update the joined_entity.json file
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2020-06-09 20:07:36 +02:00 |
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Claudio Atzori
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a2fdf85ba1
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WIP: graph cleaner implementation
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2020-06-09 19:52:53 +02:00 |
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Claudio Atzori
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05f269a1c0
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kryo based parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob
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2020-06-01 00:32:42 +02:00 |
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Claudio Atzori
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6f5f498c78
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restored common properties driving executor-cores and executor-memory in join_organization_relations wf node
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2020-05-29 11:22:00 +02:00 |
|
Claudio Atzori
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b2f9564f13
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WIP: fixed PrepareRelationsJob; parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob
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2020-05-29 10:58:15 +02:00 |
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Claudio Atzori
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a57965a3ea
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limiting the dimensions of outliers
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2020-05-28 17:36:37 +02:00 |
|
Claudio Atzori
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821be1f8b6
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experimental implementation of custom aggregation using kryo encoders
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2020-05-28 13:53:13 +02:00 |
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Claudio Atzori
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83504ecace
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limiting the maximum number of authors allowed in XML records to MAX_AUTHORS = 200; authors with ORCID can exceed that limit
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2020-05-28 13:52:30 +02:00 |
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Claudio Atzori
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ef11593068
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JoinedEntity.links defined as empty list by default
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2020-05-28 13:50:44 +02:00 |
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Claudio Atzori
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5dea155a87
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increased number of partitions produced by the join_all_entities phase as well as spark.sql.shuffle.partitions in adjancency_lists phase
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2020-05-28 13:49:59 +02:00 |
|
Claudio Atzori
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fdd54bad1c
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code formatting
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2020-05-27 19:31:54 +02:00 |
|
Claudio Atzori
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cfd753217c
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repartition the join_entities in 24k files
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2020-05-27 12:44:01 +02:00 |
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Claudio Atzori
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2f1a623d09
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sync from master branch
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2020-05-27 12:39:58 +02:00 |
|
Claudio Atzori
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9e4ec1543b
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updated test
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2020-05-27 12:38:42 +02:00 |
|
Claudio Atzori
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8047d16dd9
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added RDD based adjacency list creation procedure
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2020-05-27 12:38:12 +02:00 |
|
Claudio Atzori
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f057dcdf65
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limit the max number of externalreferences to MAX_EXTERNAL_ENTITIES
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2020-05-27 12:37:33 +02:00 |
|
Claudio Atzori
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4e36d689dd
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fixed XML serialization for children sub-elements (duplicates & externalreferences)
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2020-05-26 18:30:40 +02:00 |
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Claudio Atzori
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b8e541a454
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fixing repeated organization.websiteurl in organization entities (#5645) as well as project.ecinternationalorganizationeurinterests
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2020-05-26 10:30:09 +02:00 |
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Claudio Atzori
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7582532e73
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[maven-release-plugin] prepare for next development iteration
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2020-05-25 19:48:18 +02:00 |
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Claudio Atzori
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01c2e93395
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[maven-release-plugin] prepare release dhp-1.2.1
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2020-05-25 19:48:14 +02:00 |
|
Claudio Atzori
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925d933204
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making XmlRecordFactory immune to graph encoding changes (mostly to avoid NPEs)
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2020-05-22 08:50:44 +02:00 |
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Claudio Atzori
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b33dd58be4
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replaced parameter 'reuseRecords' with 'resumeFrom', allowing to restart the provision workflow execution from any step, useful for manual submissions or debugging
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2020-05-22 08:50:06 +02:00 |
|
Claudio Atzori
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dbfb9c19fe
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minor changes
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2020-05-21 10:00:14 +02:00 |
|
Claudio Atzori
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d7d2a0637f
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added extra parameters to the provision indexing workflow
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2020-05-20 14:55:38 +02:00 |
|
Claudio Atzori
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0bdfbb0a57
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reintroduced RDD based relation cut off procedure
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2020-05-19 15:02:21 +02:00 |
|
Claudio Atzori
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60c40618d3
|
[maven-release-plugin] prepare for next development iteration
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2020-05-11 10:17:14 +02:00 |
|
Claudio Atzori
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c267d958d5
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[maven-release-plugin] prepare release dhp-1.2.0
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2020-05-11 10:17:10 +02:00 |
|
Claudio Atzori
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42f1a2bf94
|
bumped project version to 1.2.0-SNAPSHOT
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2020-05-11 10:05:57 +02:00 |
|
Claudio Atzori
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0ccc864ad9
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[maven-release-plugin] prepare for next development iteration
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2020-05-08 17:01:31 +02:00 |
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Claudio Atzori
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6e47c724c6
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[maven-release-plugin] prepare release dhp-1.1.7
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2020-05-08 17:01:27 +02:00 |
|
Claudio Atzori
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8c67073a07
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force speculative execution to false
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2020-05-08 09:42:21 +02:00 |
|
Claudio Atzori
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bac37b3973
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fixed children expansion in XML records
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2020-05-04 11:51:17 +02:00 |
|
Claudio Atzori
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077ccd8743
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stats wf properties cleanup
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2020-05-04 11:41:46 +02:00 |
|
Claudio Atzori
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439c6255a2
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cleanup
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2020-04-29 19:09:07 +02:00 |
|
Claudio Atzori
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6f5b899038
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reformatted code according to the updated style descriptor
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2020-04-28 11:23:29 +02:00 |
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Claudio Atzori
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a0bdbacdae
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switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin
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2020-04-27 14:52:31 +02:00 |
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Claudio Atzori
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7a3f8085f7
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switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin
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2020-04-27 14:45:40 +02:00 |
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Claudio Atzori
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1e7583c5a6
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filtered invisible records in data provision workflow
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2020-04-23 07:51:34 +02:00 |
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Claudio Atzori
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0b55795d4d
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small adjustments in the provisioning workflow
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2020-04-21 16:15:04 +02:00 |
|
Claudio Atzori
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d772d967aa
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restored changes from master branch
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2020-04-20 18:53:06 +02:00 |
miconis
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4da13e4570
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Revert "Merge branch 'master' into deduptesting"
This reverts commit 772f75d167, reversing
changes made to 5f45f2c77f.
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2020-04-20 16:04:49 +02:00 |
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Claudio Atzori
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d714bfb4d4
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collectedfrom field moved in common parent class Oaf.java
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2020-04-20 12:25:19 +02:00 |
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Claudio Atzori
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ad7a131b18
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introduced common project code formatting plugin, works on the commit hook, based on https://github.com/Cosium/git-code-format-maven-plugin, applied to each java class in the project
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2020-04-18 12:42:58 +02:00 |
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Claudio Atzori
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d74e128aa6
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Utility classes moved in dhp-common and dhp-schemas
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2020-04-07 11:56:22 +02:00 |
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Claudio Atzori
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1a1a026a18
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we do expect to find field bestaccessright already defined. No need to add it again
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2020-04-07 08:55:33 +02:00 |
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Claudio Atzori
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fbdd18a96b
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using dataset based relation preparation procedure
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2020-04-07 08:54:39 +02:00 |
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Claudio Atzori
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77f59b1b10
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dataset based provision WIP
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2020-04-06 19:37:27 +02:00 |
|
Claudio Atzori
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e355961997
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dataset based provision WIP
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2020-04-06 17:34:25 +02:00 |
|
Claudio Atzori
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ca345aaad3
|
dataset based provision WIP
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2020-04-06 15:33:31 +02:00 |
|
Claudio Atzori
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c8f4b95464
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dataset based provision WIP
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2020-04-06 08:59:58 +02:00 |
|
Claudio Atzori
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eb2f5f3198
|
dataset based provision WIP
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2020-04-04 17:41:31 +02:00 |
|
Claudio Atzori
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3d1b637cab
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dataset based provision WIP
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2020-04-04 14:03:43 +02:00 |
|
Claudio Atzori
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24b2c9012e
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dataset based provision WIP
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2020-04-02 18:44:09 +02:00 |
|
Claudio Atzori
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daa26acc9d
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dataset based provision WIP, fixed spark2EventLogDir
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2020-04-02 16:15:50 +02:00 |
|
Claudio Atzori
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9c7092416a
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dataset based provision WIP
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2020-04-01 19:07:30 +02:00 |
|
Claudio Atzori
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1402eb1fe7
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cleanup
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2020-04-01 15:38:50 +02:00 |
|
Claudio Atzori
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adcdd2d05e
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WIP: reimplementing the adjacency list construction process using spark Datasets
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2020-04-01 14:56:57 +02:00 |
|
Claudio Atzori
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377e1ba840
|
[maven-release-plugin] prepare for next development iteration
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2020-03-30 20:06:00 +02:00 |
|
Claudio Atzori
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76d9315129
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[maven-release-plugin] prepare release dhp-1.1.6
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2020-03-30 20:05:56 +02:00 |
|
Claudio Atzori
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ef429010ee
|
removed log file and job-override.properties
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2020-03-30 20:00:58 +02:00 |
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Claudio Atzori
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0fbec69b82
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use oozie prepare statement to cleanup working directories
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2020-03-30 19:48:41 +02:00 |
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Claudio Atzori
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f3f9affd49
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allow dynamic executors to build XML records
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2020-03-30 13:12:11 +02:00 |
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Claudio Atzori
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2e2d4c4c68
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adjusted path to template resource
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2020-03-30 13:11:49 +02:00 |
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Claudio Atzori
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673e744649
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moved openaire specific implementations under dedicated package eu.dnetlib.dhp.oa
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2020-03-27 10:42:17 +01:00 |
 Michele Artini
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ebe45003d9
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fixed some junit packages
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2020-03-25 16:45:03 +01:00 |
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Claudio Atzori
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51d0c9bdd7
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integrated changes from branch dedupTest
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2020-03-25 15:15:41 +01:00 |
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Claudio Atzori
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6cb0a9bff0
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dedup wf directory structure aligned with project commons
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2020-03-20 16:48:14 +01:00 |
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Claudio Atzori
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abe8fb69a2
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added global properties, moved postprocessing script inside the oozie_app directory
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2020-03-18 15:43:54 +01:00 |
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Claudio Atzori
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aeb01fa353
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reading from newline delimited json textfiles instead of sequence files
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2020-03-17 11:57:24 +01:00 |
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Claudio Atzori
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a3f184fd3f
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added field websiteurl in related organizations
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2020-03-10 17:08:58 +01:00 |
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Claudio Atzori
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0e95544495
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fixed serialization for datasource subjects
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2020-03-10 17:07:44 +01:00 |
|
Claudio Atzori
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5e342a555c
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no need to compute the inverse relClass, fixed text() in xpath expressions
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2020-03-05 12:51:48 +01:00 |
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Claudio Atzori
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6ec04d4e02
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specified column used to perform the join operation in the javadoc
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2020-03-05 12:50:38 +01:00 |
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Claudio Atzori
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1e563bc15e
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introduced distinct properties driving the resouce usage for the XML record creation and the indexing phase
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2020-03-04 10:55:11 +01:00 |
|
Claudio Atzori
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bc7cfd5975
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indexing workflow WIP: fixed projects fundingtree xml conversion, prioritized links between results and projects when limiting them to 100 in the join procedure
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2020-03-02 17:03:07 +01:00 |
|
Claudio Atzori
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60bc2b1a20
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drop the hive DB before populating it from scratch
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2020-02-27 10:10:55 +01:00 |
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Claudio Atzori
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6a73fd5da5
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in order to reuse the same XmlRecordFactory across different tasks, the state of contexts must be one per record built
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2020-02-21 09:17:19 +01:00 |
|
Claudio Atzori
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33185fd0b7
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ISLookupClientFactory moved in dhp-common
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2020-02-19 16:56:38 +01:00 |
|
Claudio Atzori
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ed76521d9b
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removed stale test resources, will be re-added later on
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2020-02-18 11:51:08 +01:00 |
|
Claudio Atzori
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0f364605ff
|
removed stale tests, need to reimplemente them anyway
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2020-02-18 11:48:19 +01:00 |
|
Claudio Atzori
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56d1810a66
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working procedure for records indexing using Spark, via lib com.lucidworks.spark:spark-solr
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2020-02-14 12:28:52 +01:00 |
|
Claudio Atzori
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1fee6e2b7e
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implemented XML records construction and serialization, indexing WIP
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2020-02-13 16:53:27 +01:00 |
|
Claudio Atzori
|
7ba0f44d05
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WIP
|
2020-01-30 18:21:07 +01:00 |
|
Claudio Atzori
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49ef2f4eb1
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removed input parameter specification, SparkXmlRecordBuilderJob doesn't need hive
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2020-01-30 18:20:26 +01:00 |
|
Claudio Atzori
|
b5e1e2e5b2
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reintegrated changes from fcbc4ccd70
|
2020-01-30 18:11:04 +01:00 |
|
Claudio Atzori
|
7bacd6812e
|
Merge branch 'provision_indexing' of https://code-repo.d4science.org/D-Net/dnet-hadoop into HEAD
Conflicts:
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/GraphJoiner.java
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/MappingUtils.java
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/RelatedEntity.java
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/SparkXmlRecordBuilderJob.java
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2020-01-30 17:59:46 +01:00 |
|
Claudio Atzori
|
b2691a3b0a
|
save adjacency list as JoinedEntity
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2020-01-30 17:46:29 +01:00 |
|
Claudio Atzori
|
8c2aff99b0
|
joining entities using T x R x S, WIP: last representation based on LinkedEntity type
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2020-01-29 15:40:33 +01:00 |
|
Claudio Atzori
|
fcbc4ccd70
|
a bit of docs doesn't hurt
|
2020-01-24 08:43:23 +01:00 |
|
Claudio Atzori
|
a55f5fecc6
|
joining entities using T x R x S method with groupByKey, WIP: making target objects (T) have lower memory footprint
|
2020-01-24 08:17:53 +01:00 |
|
Claudio Atzori
|
799929c1e3
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joining entities using T x R x S method with groupByKey
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2020-01-21 16:35:44 +01:00 |
|
Claudio Atzori
|
97c239ee0d
|
WIP: trying to find a way to build the records for the index
|
2020-01-16 12:02:28 +02:00 |
|
Claudio Atzori
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7ba586d2e5
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oozie workflow aimed to build the adjacency lists representation of the graph, needed to build the records to be indexed
|
2019-12-17 16:24:49 +01:00 |