Commit Graph

407 Commits

Author SHA1 Message Date
Miriam Baglioni 78fdb11c3f merge branch with master 2020-10-29 12:55:22 +01:00
Sandro La Bruzzo 1d9fdb7367 fixed spark memory issue in SparkSplitOafTODLIEntities 2020-10-28 12:30:32 +01:00
Miriam Baglioni d2374e3b9e added code to handle cases where the funding tree is not existing 2020-10-27 16:15:21 +01:00
Miriam Baglioni 5d3012eeb4 changed code to dump only the programme list and not the classification list 2020-10-27 16:14:18 +01:00
Miriam Baglioni 3241ec1777 added connection timeout and socket timeout 600 sec 2020-10-27 16:12:11 +01:00
Claudio Atzori 266bf1a221 common IdentifierFactory in use on the mapping from the aggregator data; merge the entities sharing the same id; code formatting 2020-10-16 17:02:10 +02:00
Claudio Atzori 34f1d0904b common IdentifierFactory in use on the mapping from the aggregator data 2020-10-16 16:00:19 +02:00
Sandro La Bruzzo fed711da80 Merge remote-tracking branch 'origin/master' into merge_record_to_common 2020-10-13 15:32:45 +02:00
Alessia Bardi 8775a64bc1 Merge pull request 'Merging different compatibility levels (pinocchio operator)' (#47) from merge_graph into master 2020-10-09 14:44:52 +02:00
Sandro La Bruzzo eec418cd26 moved AuthoreMerger into dhp-common 2020-10-08 10:33:55 +02:00
Sandro La Bruzzo cd9c377d18 adpted scholexplorer Dump generation to the new Dataset definition 2020-10-08 10:10:13 +02:00
Claudio Atzori a3f37a9414 javadoc 2020-10-07 16:44:22 +02:00
Claudio Atzori 8d85a2fced [BETA wf only] datasources involved in the merge operation doesn't obey to the infra precedence policy, but relies on a custom behaviour that, given two datasources from beta and prod returns the one from prod with the highest compatibility among the two 2020-10-07 16:28:52 +02:00
Miriam Baglioni ae08b3c0dd merge branch with master 2020-10-05 11:35:55 +02:00
Miriam Baglioni 32bffb0134 changed the name from communities_infrastructures to communities_infrastuctures.json 2020-10-05 11:24:17 +02:00
Miriam Baglioni 25cbcf6114 changed to solve issues about names. context renamed communities_infrastructure.json and removed the double json.gz extention to the name of the part in the tar 2020-10-02 12:17:46 +02:00
Claudio Atzori 49ae3450a9 code formatting 2020-10-02 09:43:24 +02:00
Claudio Atzori c2a6e2a9bf fixed mapping for datasource journal info (ISSNs) 2020-10-02 09:37:08 +02:00
Miriam Baglioni cfb5766c6b removed double json.gz from names of files in the tar 2020-10-01 17:18:34 +02:00
Miriam Baglioni fcaedac980 merge branch with master 2020-10-01 16:46:59 +02:00
Miriam Baglioni c6e6ed1bd8 merge branch with master 2020-10-01 16:24:41 +02:00
Claudio Atzori 2e9e13444d author pids made unique by value 2020-10-01 12:50:40 +02:00
Claudio Atzori e265c3e125 cleaning functions factored out in a dedicated class 2020-10-01 10:50:15 +02:00
Miriam Baglioni 7b6a7333e6 merge branch with master 2020-09-25 16:42:07 +02:00
Miriam Baglioni ed5239f9ec added new code to handle the new possibility to upload files to an already open deposition 2020-09-25 16:34:32 +02:00
Miriam Baglioni 3a8c524fce refactor 2020-09-25 16:34:02 +02:00
Miriam Baglioni de6c4d46d8 fixed conflicts 2020-09-24 15:35:01 +02:00
Claudio Atzori 9e3e93c6b6 setting the correct issn type in the datasource.journal element 2020-09-24 10:39:16 +02:00
Miriam Baglioni 39eb8ab25b changed the dump to move from h2020programme to h2020classification 2020-09-23 17:33:00 +02:00
Miriam Baglioni 1f893e63dc - 2020-09-14 14:33:10 +02:00
Claudio Atzori 8a523474b7 code formatting 2020-09-07 11:40:16 +02:00
Miriam Baglioni 8694bb9b31 refactoring due to compilation 2020-08-24 17:07:34 +02:00
Miriam Baglioni 8a069a4fea - 2020-08-24 17:01:30 +02:00
Miriam Baglioni 34fa96f3b1 - 2020-08-24 17:00:20 +02:00
Miriam Baglioni 5fb2949cb8 added utils methods 2020-08-24 17:00:09 +02:00
Miriam Baglioni 2a540b6c01 added constants for the pid graph dump 2020-08-24 16:55:35 +02:00
Miriam Baglioni bef79d3bdf first attempt to the dump of pids graph 2020-08-24 16:49:38 +02:00
Miriam Baglioni 85203c16e3 merge branch with master 2020-08-19 11:49:03 +02:00
Miriam Baglioni 1c593a9cfe - 2020-08-19 11:29:51 +02:00
Miriam Baglioni e42b2f5ae2 - 2020-08-19 11:29:09 +02:00
Miriam Baglioni f81ee22418 changed to mirror the changes in the model (Instance, CommunityInstance, GraphResult) 2020-08-19 11:28:26 +02:00
Miriam Baglioni 387be43fd4 changed to discriminate if dumping all the results type together or each one in its own archive 2020-08-19 11:25:27 +02:00
Miriam Baglioni dc5096a327 refactoring due to compilation 2020-08-19 10:57:36 +02:00
Miriam Baglioni 09f5b92763 added specific reference to class 2020-08-14 20:00:09 +02:00
Miriam Baglioni a5043de5da added method to get the mapped instance 2020-08-13 18:45:50 +02:00
Miriam Baglioni fcd10f452c changed because of #40 (comment) 2020-08-13 12:55:32 +02:00
Miriam Baglioni bfd1fcde6d removed not useful method and changed because of #40 (comment) and #40 (comment) 2020-08-13 12:14:37 +02:00
Miriam Baglioni 7fd8397123 apply changes in #40 (comment) 2020-08-13 12:13:15 +02:00
Miriam Baglioni 753d448cc9 apply changes in #40 (comment) 2020-08-13 12:12:58 +02:00
Miriam Baglioni c0e071fa26 apply changes in #40 (comment) 2020-08-13 12:12:40 +02:00
Miriam Baglioni 526db915bc apply changes in #40 (comment) 2020-08-13 12:12:16 +02:00
Miriam Baglioni b0fab0d138 apply changes in #40 (comment) 2020-08-13 12:11:57 +02:00
Miriam Baglioni 1b6320b251 apply changes in #40 (comment) 2020-08-13 12:11:41 +02:00
Miriam Baglioni 743d31be22 apply changes in #40 (comment) 2020-08-13 12:11:22 +02:00
Miriam Baglioni 65b48df652 apply changes in #40 (comment) 2020-08-13 12:11:06 +02:00
Miriam Baglioni 90b54d3efb apply changes in #40 (comment) 2020-08-13 12:08:24 +02:00
Miriam Baglioni 69bbb9592a apply changes in #40 (comment) 2020-08-13 12:07:39 +02:00
Miriam Baglioni 945323299a apply changes in #40 (comment) 2020-08-13 12:07:24 +02:00
Miriam Baglioni e04c993247 apply changes in #40 (comment) 2020-08-13 12:07:07 +02:00
Miriam Baglioni ed0812d0ce apply changes in #40 (comment) 2020-08-13 12:06:49 +02:00
Miriam Baglioni d55cfe0ea5 apply changes in #40 (comment) 2020-08-13 12:06:20 +02:00
Miriam Baglioni 80866bec7d apply changes in #40 (comment) 2020-08-13 12:06:05 +02:00
Miriam Baglioni 1400978c0a apply changes in #40 (comment) 2020-08-13 12:05:44 +02:00
Miriam Baglioni 7b941a2e0a apply changes in #40 (comment) 2020-08-13 12:05:17 +02:00
Miriam Baglioni f7474f50fe apply changes in #40 (comment) 2020-08-13 12:04:52 +02:00
Miriam Baglioni 367203f412 apply changes in #40 (comment) 2020-08-13 12:04:33 +02:00
Miriam Baglioni 3ab4809d31 apply changes in #40 (comment) 2020-08-13 12:04:10 +02:00
Miriam Baglioni 235d4e4d6e moved Context as relevant for Communities dump 2020-08-12 18:16:45 +02:00
Miriam Baglioni 7400cd019d removed not needed variable 2020-08-12 10:03:33 +02:00
Miriam Baglioni 98d28bab5c fixed missing _ in context nsprefix 2020-08-12 10:00:18 +02:00
Miriam Baglioni 2d67476417 merge branch with master 2020-08-11 15:46:04 +02:00
Miriam Baglioni 0603ec4757 changed test to upload the dump for covid-19 community 2020-08-11 15:43:25 +02:00
Miriam Baglioni cf4d918787 added description, changed parameter name and added method 2020-08-11 15:27:31 +02:00
Miriam Baglioni dc5fc5366d Creation of an archive for each related dump part 2020-08-11 15:26:06 +02:00
Miriam Baglioni 0ce49049d6 added description 2020-08-11 15:25:11 +02:00
Miriam Baglioni 9bae991167 added description of the class 2020-08-11 11:20:43 +02:00
Miriam Baglioni 341dc59ead removed the repartition(1). Added code for the creation of an archive containing all the parts dumped for each community 2020-08-11 11:18:58 +02:00
Miriam Baglioni 1991a49f70 removed reference to isLookUp to get the communityMap 2020-08-10 18:02:56 +02:00
Miriam Baglioni fe88904df0 changed the wf definition 2020-08-10 12:01:14 +02:00
Miriam Baglioni 87856467e2 removed isLookUpUrl and added code to read from HDSF the communitymap 2020-08-10 11:38:41 +02:00
Miriam Baglioni 3aedfdf0d6 added option to do a new deposition or new version of an old deposition 2020-08-07 17:49:14 +02:00
Miriam Baglioni 1b3ad1bce6 filter out authors pid (only orcid). Added check to get unique provenance for context id. filtr out countries with code UNKNOWN 2020-08-07 17:48:18 +02:00
Miriam Baglioni 5ceb8c5f0a moved constants from graph.Constants 2020-08-07 17:46:47 +02:00
Miriam Baglioni 6c65c93c0e refactoring 2020-08-07 17:45:35 +02:00
Miriam Baglioni 68adf86fe4 refactoring 2020-08-07 17:43:20 +02:00
Miriam Baglioni 26d2ad6ebb refactoring 2020-08-07 17:41:56 +02:00
Miriam Baglioni 9675af7965 refactoring 2020-08-07 17:41:07 +02:00
Miriam Baglioni 346a91f4d9 Added constants 2020-08-07 17:35:39 +02:00
Miriam Baglioni d52b0e1797 no use of IsLookUp. The query is done once and its result stored on HDFS. The path to the result is given instead of the isLookUpUrl 2020-08-07 17:34:40 +02:00
Miriam Baglioni ae1b7fbfdb changed method signature from set of mapkey entries to String representing path on file system where to find the map 2020-08-07 17:32:27 +02:00
Miriam Baglioni 545ea9f77e moved in common. Zenodo response model and APIClient to deposit in Zenodo 2020-08-07 16:44:51 +02:00
Sandro La Bruzzo 4fb1821fab Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-08-06 10:28:31 +02:00
Sandro La Bruzzo 9d9e9edbd2 improved extractEntity Relation workflows using dataset 2020-08-06 10:28:24 +02:00
Miriam Baglioni 14eda4f46e added method to try to put inputstream to zenodo 2020-08-05 14:18:25 +02:00
Miriam Baglioni e737a47270 added classes to try to send input stream to zenodo for the upload 2020-08-05 14:17:40 +02:00
Miriam Baglioni 873e9cd50c changed hadoop setting to connect to s3 2020-08-04 15:37:25 +02:00
Alessia Bardi a29565ff57 code formatting 2020-08-04 12:55:27 +02:00
Alessia Bardi 01db29e208 fixes redmine issue #5846: datacite and its different namespace declarations 2020-08-04 12:53:48 +02:00
Alessia Bardi b4e4e5f858 do not duplicate result PIDs 2020-08-04 12:52:14 +02:00
Miriam Baglioni 5b651abf82 merge branch with master 2020-08-04 10:14:07 +02:00