 Claudio Atzori
|
6cb0a9bff0
|
dedup wf directory structure aligned with project commons
|
2020-03-20 16:48:14 +01:00 |
miconis
|
e16e644faf
|
implementation of the workflow for entity update and for relations update
|
2020-03-20 13:01:56 +01:00 |
|
miconis
|
4e82a24af2
|
minor changes and implementation of the create connected components action
|
2020-03-19 15:01:07 +01:00 |
|
Claudio Atzori
|
36236dd1c1
|
action migration workflow produces eu.dnetlib.dhp.schema.action.AtomicAction(s)
|
2020-03-19 14:00:38 +01:00 |
|
Claudio Atzori
|
a0ab15a64c
|
need to stick on using guava:11.0.2 as it is the version used by the hadoop components (oozie client for sure). The last version (28.2-jre) breaks the oozie workflow submission
|
2020-03-19 13:58:58 +01:00 |
 Sandro La Bruzzo
|
0594b92a6d
|
implemented relation with dataset
|
2020-03-19 11:11:07 +01:00 |
|
miconis
|
679b5869e5
|
implementation of the lookup procedure to take dedup conf from the resource profiles
|
2020-03-18 17:41:56 +01:00 |
|
Claudio Atzori
|
abe8fb69a2
|
added global properties, moved postprocessing script inside the oozie_app directory
|
2020-03-18 15:43:54 +01:00 |
|
miconis
|
f32eae5ce9
|
implementation of the spark action for the simrel creation
|
2020-03-18 14:27:49 +01:00 |
|
Claudio Atzori
|
c7e0730720
|
compress the output produced by migration steps 1 and 2
|
2020-03-18 09:34:57 +01:00 |
|
Claudio Atzori
|
2f11e37602
|
fixed expansion of path variables
|
2020-03-17 19:41:07 +01:00 |
|
Claudio Atzori
|
2795b0b096
|
no need to mkdir a the all_entities file
|
2020-03-17 17:22:14 +01:00 |
|
Claudio Atzori
|
19746ad308
|
when reuseContent, reset ${workingPath}/all_entities
|
2020-03-17 17:17:06 +01:00 |
|
Claudio Atzori
|
2f0c85eeb3
|
updated parameters for regular_all_steps worfklow, introduced flag 'reuseContent'
|
2020-03-17 17:04:58 +01:00 |
|
Claudio Atzori
|
b8290b5851
|
updated parameters for regular_all_steps worfklow
|
2020-03-17 15:45:30 +01:00 |
|
Claudio Atzori
|
4706f24ec5
|
updated parameters for regular_all_steps worfklow
|
2020-03-17 15:23:54 +01:00 |
|
Claudio Atzori
|
aeb01fa353
|
reading from newline delimited json textfiles instead of sequence files
|
2020-03-17 11:57:24 +01:00 |
|
Claudio Atzori
|
af835f2f98
|
when migrating actionsets from DM cluster, populate the AtomicAction.targetValue when empty (dedup similarities)
|
2020-03-15 18:07:59 +01:00 |
|
Claudio Atzori
|
9c84e21b87
|
added workflow to migrate latest version of each actionset content from DM to OCEAN cluster, mapping the targetValues from the old protobuf data model to the dhp.OAF datamodel
|
2020-03-13 15:56:52 +01:00 |
|
Claudio Atzori
|
8fe7ae1482
|
xml formatting
|
2020-03-13 15:53:56 +01:00 |
|
Sandro La Bruzzo
|
addaaa091f
|
migrate relation from RDD to Dataset
|
2020-03-13 09:13:20 +01:00 |
|
Claudio Atzori
|
7b6f0c8756
|
reading graph dump as text files, encoded as newline-delimited JSON records, as indicated in the wiki
|
2020-03-10 17:19:17 +01:00 |
|
Claudio Atzori
|
60aedb1110
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-03-10 17:09:44 +01:00 |
|
Claudio Atzori
|
a3f184fd3f
|
added field websiteurl in related organizations
|
2020-03-10 17:08:58 +01:00 |
|
Claudio Atzori
|
0e95544495
|
fixed serialization for datasource subjects
|
2020-03-10 17:07:44 +01:00 |
|
Sandro La Bruzzo
|
7b28783fb4
|
updated unpaywall mapping
|
2020-03-08 17:00:19 +01:00 |
 Michele Artini
|
b6efa9d6ab
|
Configuration of the SequenceFile Writer
|
2020-03-05 15:49:14 +01:00 |
|
Claudio Atzori
|
5e342a555c
|
no need to compute the inverse relClass, fixed text() in xpath expressions
|
2020-03-05 12:51:48 +01:00 |
|
Claudio Atzori
|
6ec04d4e02
|
specified column used to perform the join operation in the javadoc
|
2020-03-05 12:50:38 +01:00 |
|
Michele Artini
|
7a2a466161
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-03-04 14:50:59 +01:00 |
|
Michele Artini
|
755eade2fb
|
fix creation ids
|
2020-03-04 14:49:45 +01:00 |
|
Claudio Atzori
|
6379f32466
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-03-04 10:57:06 +01:00 |
|
Claudio Atzori
|
0233987603
|
introduced post processing step following the hive DB creation/population
|
2020-03-04 10:56:50 +01:00 |
|
Claudio Atzori
|
1e563bc15e
|
introduced distinct properties driving the resouce usage for the XML record creation and the indexing phase
|
2020-03-04 10:55:11 +01:00 |
|
Claudio Atzori
|
9af3e904be
|
close the SparkSession at the end
|
2020-03-04 10:53:31 +01:00 |
|
Michele Artini
|
e7167b996a
|
logs and closeable
|
2020-03-04 10:46:36 +01:00 |
|
Claudio Atzori
|
25ceec29ab
|
code formatting
|
2020-03-04 10:44:24 +01:00 |
|
Claudio Atzori
|
63c00c5e88
|
fixed typo
|
2020-03-04 10:43:44 +01:00 |
|
Claudio Atzori
|
9cf5ce2e66
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-03-02 17:03:10 +01:00 |
|
Claudio Atzori
|
bc7cfd5975
|
indexing workflow WIP: fixed projects fundingtree xml conversion, prioritized links between results and projects when limiting them to 100 in the join procedure
|
2020-03-02 17:03:07 +01:00 |
|
Michele Artini
|
4b29a121b0
|
migration using spark in step2
|
2020-03-02 16:12:14 +01:00 |
|
Michele Artini
|
5445a57102
|
migration using spark in step2
|
2020-03-02 16:11:59 +01:00 |
|
Sandro La Bruzzo
|
b32655e48e
|
changed code to save intermediate result
|
2020-02-27 10:18:46 +01:00 |
|
Claudio Atzori
|
60bc2b1a20
|
drop the hive DB before populating it from scratch
|
2020-02-27 10:10:55 +01:00 |
|
Sandro La Bruzzo
|
f09e065865
|
incremented number of repartition
|
2020-02-26 19:26:19 +01:00 |
|
Sandro La Bruzzo
|
071f5c3e52
|
fixed NPE
|
2020-02-26 15:42:20 +01:00 |
|
Sandro La Bruzzo
|
a1a6fc8315
|
fixed NPE
|
2020-02-26 15:42:13 +01:00 |
|
Sandro La Bruzzo
|
1edf02a3ce
|
added log
|
2020-02-26 15:25:03 +01:00 |
|
Sandro La Bruzzo
|
c3ecabd8e8
|
fixed NPE
|
2020-02-26 14:40:02 +01:00 |
|
Sandro La Bruzzo
|
5d0f46651b
|
fixed NPE
|
2020-02-26 14:31:34 +01:00 |
|
Sandro La Bruzzo
|
bc342bf73a
|
fixed wrong generation type in summary
|
2020-02-26 12:49:47 +01:00 |
|
Sandro La Bruzzo
|
3112e21858
|
fixed typo
|
2020-02-26 12:22:43 +01:00 |
|
Sandro La Bruzzo
|
119ae6eef5
|
fixed wrong loop in the workflow
|
2020-02-26 12:18:50 +01:00 |
|
Sandro La Bruzzo
|
7936583a3d
|
added generation of Scholix collection
|
2020-02-26 12:09:06 +01:00 |
|
Sandro La Bruzzo
|
2ef3705b2c
|
Added Provision workflow
|
2020-02-26 10:51:35 +01:00 |
|
Michele Artini
|
689908b2e9
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-02-25 16:00:51 +01:00 |
|
Michele Artini
|
93665773ea
|
Fixed a problem with JavaRDD Union
|
2020-02-25 15:59:21 +01:00 |
|
Sandro La Bruzzo
|
b021b8a2e1
|
Added index wf
|
2020-02-24 10:15:55 +01:00 |
|
Claudio Atzori
|
6a73fd5da5
|
in order to reuse the same XmlRecordFactory across different tasks, the state of contexts must be one per record built
|
2020-02-21 09:17:19 +01:00 |
|
Michele Artini
|
d49cd2fdc6
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-02-20 11:21:54 +01:00 |
|
Claudio Atzori
|
5e5e32cb48
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
|
2020-02-19 16:56:52 +01:00 |
|
Claudio Atzori
|
33185fd0b7
|
ISLookupClientFactory moved in dhp-common
|
2020-02-19 16:56:38 +01:00 |
|
Michele Artini
|
5d3739b5cf
|
migration of claims
|
2020-02-19 15:11:17 +01:00 |
|
Michele Artini
|
173f1df1e5
|
saved a query for openaire production database
|
2020-02-19 10:15:08 +01:00 |
|
Sandro La Bruzzo
|
9a2d74ac82
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-02-19 10:13:45 +01:00 |
|
Sandro La Bruzzo
|
e5d7cdf422
|
fixed sql query
|
2020-02-19 10:13:36 +01:00 |
|
Sandro La Bruzzo
|
2b8675462f
|
refactoring code
|
2020-02-19 10:07:08 +01:00 |
|
Claudio Atzori
|
ed76521d9b
|
removed stale test resources, will be re-added later on
|
2020-02-18 11:51:08 +01:00 |
|
Claudio Atzori
|
0f364605ff
|
removed stale tests, need to reimplemente them anyway
|
2020-02-18 11:48:19 +01:00 |
|
Claudio Atzori
|
6a288625e5
|
fixed workflow outgoing node
|
2020-02-17 15:04:33 +01:00 |
|
Claudio Atzori
|
1b18fd4d54
|
sync with master branch
|
2020-02-17 13:49:46 +01:00 |
|
Sandro La Bruzzo
|
4f04759738
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-02-17 12:31:58 +01:00 |
|
Sandro La Bruzzo
|
76ee85141a
|
added oozie job for DNET migration and implemented Spark job for extracting entities
|
2020-02-17 12:31:44 +01:00 |
|
Claudio Atzori
|
c460e2d281
|
Aggiornare 'dhp-workflows/docs/oozie-installer.markdown'
|
2020-02-17 11:54:48 +01:00 |
|
Michele Artini
|
176c5606bd
|
aligned with origin/master, aligned model and mapping
|
2020-02-17 10:40:53 +01:00 |
|
Claudio Atzori
|
56d1810a66
|
working procedure for records indexing using Spark, via lib com.lucidworks.spark:spark-solr
|
2020-02-14 12:28:52 +01:00 |
|
Claudio Atzori
|
1ee1baa8c0
|
Merge branch 'master' into provision_indexing
|
2020-02-13 18:17:07 +01:00 |
|
Claudio Atzori
|
a3d0b57b25
|
[maven-release-plugin] prepare for next development iteration
|
2020-02-13 18:11:33 +01:00 |
|
Claudio Atzori
|
6ed9a15bc8
|
[maven-release-plugin] prepare release dhp-1.1.5
|
2020-02-13 18:11:31 +01:00 |
|
Claudio Atzori
|
49e648f7c3
|
bumped version
|
2020-02-13 18:09:31 +01:00 |
|
Claudio Atzori
|
f9fae97e09
|
test json files aligned with the latest model changes
|
2020-02-13 18:05:59 +01:00 |
|
Claudio Atzori
|
1fee6e2b7e
|
implemented XML records construction and serialization, indexing WIP
|
2020-02-13 16:53:27 +01:00 |
|
Michele Artini
|
80cb52593f
|
bug fixing
|
2020-02-13 15:34:13 +01:00 |
|
Michele Artini
|
cdea0dae75
|
bug fixing
|
2020-02-12 16:34:00 +01:00 |
|
Michele Artini
|
69336195d3
|
simplifications
|
2020-02-12 11:12:38 +01:00 |
|
Michele Artini
|
06c2fd6df9
|
bug fixing
|
2020-02-11 15:29:50 +01:00 |
|
Michele Artini
|
5fc09b179c
|
bug fixing
|
2020-02-11 12:48:03 +01:00 |
|
Michele Artini
|
95740767e0
|
Ready for tests
|
2020-02-10 16:04:06 +01:00 |
|
Michele Artini
|
181e8498d4
|
...
|
2020-02-07 16:02:49 +01:00 |
|
Michele Artini
|
bb1533a07e
|
partial commit
|
2020-02-05 15:35:40 +01:00 |
|
Michele Artini
|
fbb0fc140b
|
partial implementation of migration
|
2020-02-04 15:25:47 +01:00 |
|
Claudio Atzori
|
7ba0f44d05
|
WIP
|
2020-01-30 18:21:07 +01:00 |
|
Claudio Atzori
|
49ef2f4eb1
|
removed input parameter specification, SparkXmlRecordBuilderJob doesn't need hive
|
2020-01-30 18:20:26 +01:00 |
|
Claudio Atzori
|
b5e1e2e5b2
|
reintegrated changes from fcbc4ccd70
|
2020-01-30 18:11:04 +01:00 |
|
Claudio Atzori
|
7bacd6812e
|
Merge branch 'provision_indexing' of https://code-repo.d4science.org/D-Net/dnet-hadoop into HEAD
Conflicts:
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/GraphJoiner.java
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/MappingUtils.java
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/RelatedEntity.java
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/SparkXmlRecordBuilderJob.java
|
2020-01-30 17:59:46 +01:00 |
|
Claudio Atzori
|
b2691a3b0a
|
save adjacency list as JoinedEntity
|
2020-01-30 17:46:29 +01:00 |
|
Claudio Atzori
|
8c2aff99b0
|
joining entities using T x R x S, WIP: last representation based on LinkedEntity type
|
2020-01-29 15:40:33 +01:00 |
|
Sandro La Bruzzo
|
19a80e4638
|
implemented workfow for aggregation and generation of infospace graph
|
2020-01-24 09:58:55 +01:00 |
|
Claudio Atzori
|
fcbc4ccd70
|
a bit of docs doesn't hurt
|
2020-01-24 08:43:23 +01:00 |
|
Claudio Atzori
|
a55f5fecc6
|
joining entities using T x R x S method with groupByKey, WIP: making target objects (T) have lower memory footprint
|
2020-01-24 08:17:53 +01:00 |