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188 Commits

Author SHA1 Message Date
Miriam Baglioni 80d5b3b4de DoiBoost AccessRigh #4362 - removing commented code 2021-07-28 11:16:49 +02:00
Miriam Baglioni 5fe016dcbc DoiBoost AccessRigh #4362 - related to https://code-repo.d4science.org/D-Net/dnet-hadoop/pulls/126/files#issuecomment-4194 2021-07-28 11:14:28 +02:00
Miriam Baglioni 43e62fcae9 DoiBoost AccessRigh #4362 - related to https://code-repo.d4science.org/D-Net/dnet-hadoop/pulls/126/files#issuecomment-4193 2021-07-28 11:04:55 +02:00
Miriam Baglioni 1a5b114906 DoiBoost AccessRigh #4362 - refactoring 2021-07-22 12:00:23 +02:00
Miriam Baglioni 59530a14fb DoiBoost AccessRigh #4362 - set BestAccessRight with the ususal comparator 2021-07-19 12:34:35 +02:00
Miriam Baglioni 199123b74b DoiBoost AccessRigh #4362 - Fixed issue on date formatting. Added test method and associated resource 2021-07-16 17:30:27 +02:00
Miriam Baglioni 3bc9a05bc9 mergin with branch beta 2021-07-16 10:32:27 +02:00
Miriam Baglioni 34506df1b6 DoiBoost AccessRigh #4362 - if the journal is open, the OPEN access right is set to all instances and color is GOLD (overwrite if the color was already set in one of the previous steps) 2021-07-16 10:29:51 +02:00
Claudio Atzori bf9e0d2d4f Merge pull request 'orcid-no-doi' (#123) from enrico.ottonello/dnet-hadoop:orcid-no-doi into beta 
Reviewed-on: #123
 2021-07-15 17:59:41 +02:00
Miriam Baglioni 4da46bb62f mergin with branch beta 2021-07-14 15:08:52 +02:00
Miriam Baglioni 09ad7b2a9e DoiBoost AccessRigh #4362 - Unpaywall mapped to OAF with OPEN instance (non oa are filtered out) (unknown hostedby) + map the color as it is 2021-07-14 14:45:21 +02:00
Miriam Baglioni f4f7c6f9d3 DoiBoost AccessRigh #4362 - Unpaywall mapped to OAF with OPEN instance (non oa are filtered out) (unknown hostedby) + map the color as it is 2021-07-14 14:44:54 +02:00
Miriam Baglioni 981b1018f6 DoiBoost AccessRigh #4362 - decide access right according to licence. Default access right is Unknown 2021-07-14 14:42:06 +02:00
Sandro La Bruzzo 3d8e2aa146 Code refactor: 
- removed old workflows in doiboost
 - splitted workflow of doiboost in preprocess and process
 2021-07-14 14:37:06 +02:00
Miriam Baglioni 441701c85c DoiBoost AccessRigh #4362 - If multiple licenses are available, take the one applied to 'vor' 2021-07-14 14:14:50 +02:00
Sandro La Bruzzo c35c117601 fixed process doiboost workflow: 
- splitted OrcidToOAF into two phase preprocess and process
- updated workflow used in production
 2021-07-14 12:48:01 +02:00
Sandro La Bruzzo bbe8193930 merged stable ids 2021-07-12 17:00:43 +02:00
Miriam Baglioni 7177c25261 added check for null value during doi normalization 2021-07-05 16:22:38 +02:00
Miriam Baglioni 0892cad4e8 the normalization of the content of value was not visible outside the block. Moved doi normalization operation while returning value 2021-07-05 16:21:42 +02:00
Sandro La Bruzzo c6fa8598e1 massive code refactor: 
removed modules dhp-*-scholexplorer
 2021-07-01 22:13:45 +02:00
Miriam Baglioni cf758f4f91 added normalization step for the doi 2021-06-30 10:03:15 +02:00
Miriam Baglioni 801763a0fa there is no more the need to lower case the doi since it is done in the first step. Also changed the creation of the id by using the factory 2021-06-29 19:07:23 +02:00
Miriam Baglioni a74de1cda2 added normalization step to the doi 2021-06-29 18:51:11 +02:00
Miriam Baglioni 06074ea7d3 added normalization step to the doi 2021-06-29 18:46:08 +02:00
Miriam Baglioni 8b8ffe82dc added step of normalization for the doi 2021-06-29 18:41:39 +02:00
Miriam Baglioni 50cc21d92e Added method to normalize doi values (lower case, remove all preceeding 10., filtering out doi not starting with 10.) 2021-06-29 18:35:28 +02:00
Sandro La Bruzzo 80e15cc455 implemented mapping from uniprot, pdb and ebi links 2021-06-24 17:20:00 +02:00
Sandro La Bruzzo a167543637 Merge branch 'stable_ids' of code-repo.d4science.org:D-Net/dnet-hadoop into stable_id_scholexplorer 2021-06-21 09:14:11 +02:00
Miriam Baglioni 464c2ddde3 changed to split in two steps the generation of the crossref dataset 2021-06-18 09:42:31 +02:00
Miriam Baglioni 6aca0d8ebb added kryo encoding for input files 2021-06-18 09:42:07 +02:00
Sandro La Bruzzo 3100166d29 Merge remote-tracking branch 'origin/stable_ids' into stable_id_scholexplorer 2021-06-16 16:22:16 +02:00
Miriam Baglioni 9f9dd00b94 refactoring 2021-06-15 09:24:46 +02:00
Miriam Baglioni 63d74ee379 refactoring 2021-06-15 09:24:11 +02:00
Miriam Baglioni f7379255b6 changed the workflow to extract info from the dump 2021-06-15 09:22:54 +02:00
Miriam Baglioni d6e21bb6ea creates the crossref dataset used for doiboost together with unpacking part from tar 2021-06-14 17:27:19 +02:00
Miriam Baglioni ce0cfd79e0 creates the crossref dataset used for doiboost 2021-06-14 13:40:19 +02:00
Miriam Baglioni 93efe4de82 split the construction of crossref dataset in two parts. This one just unpacks the tar entries 2021-06-14 13:39:40 +02:00
Sandro La Bruzzo efbea1e01a minor fix 2021-06-14 09:45:14 +02:00
Miriam Baglioni 75780fc636 extraction of the tar for the dump of crossref, and creation of the dataset 2021-06-14 09:45:07 +02:00
Miriam Baglioni 8d2e086e48 changes to avoid reassignment to val 2021-06-07 17:50:37 +02:00
Miriam Baglioni f33521d338 Aggiornare 'dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala' 
to be able to replace the aboject assigned to author val has been replaced by var
 2021-06-07 17:27:07 +02:00
Miriam Baglioni bc12e9819e Aggiornare 'dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala' 
The change is to fix the issue that arises when the same work appears more than once on the same ORCID profile. The change avoid to replicate the association doi -> author when the orcid id is already associated to the doi.
 2021-06-07 16:37:01 +02:00
Claudio Atzori 5e4b91d9ef more pervasive use of constants from ModelConstants, especially for ORCID 2021-05-26 18:20:23 +02:00
Claudio Atzori c4a23c2f4d fix: preserving the old identifier among the originalIds in the doiboost construction process, trying to avoid UnsupportedOperationException while adding elements to the originalIds 2021-05-19 16:01:52 +02:00
Claudio Atzori ba03f549d7 fix: preserving the old identifier among the originalIds in the doiboost construction process 2021-05-19 15:43:26 +02:00
Claudio Atzori 2cbf15f4fb using ModelConstants 2021-05-17 09:54:45 +02:00
Claudio Atzori f19feceaf0 set the old identifier before switching to the new one 2021-05-14 12:53:40 +02:00
Claudio Atzori 1bd70fa2c6 preserving the old identifier among the originalIds in the doiboost construction process 2021-05-14 11:30:41 +02:00
Claudio Atzori ca3f3a7687 using ModelConstants 2021-05-14 11:29:49 +02:00
Claudio Atzori 23b8883ab1 applied intellij code cleanup 2021-05-14 10:58:12 +02:00