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5505 Commits

Author SHA1 Message Date
Antonis Lempesis 15b54a345a added fos lvl4 2024-05-24 13:21:28 +03:00
Lampros Smyrnaios b48ed6e617 Change configuration in the copy-operation to Impala Cluster: 
Set the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" parameter to "false".
 2024-05-23 16:58:12 +03:00
Lampros Smyrnaios 68322843e2 Small updates to the copy-operation to Impala Cluster: 
- Add a configuration-"switch" to control whether the script exits upon an error or not.
- Allow the script to exit when a table could not be created.
- Show the elapsed time for processing each database.
 2024-05-23 15:07:49 +03:00
Lampros Smyrnaios c7b32bbacc Update CopyDataToImpalaCluster: 
Update the code of acquiring the entities from Ocean cluster, through hive, in order to optimize the process and account for additional reserved keywords in Impala.

Co-authored-by: Antonis Lempesis <antleb@di.uoa.gr>
 2024-05-23 13:00:19 +03:00
Claudio Atzori c3fe59bc78 fixed conflicts merging from beta, code formatting 2024-05-21 14:50:40 +02:00
Claudio Atzori 1ea67eba82 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2024-05-21 13:48:48 +02:00
Claudio Atzori f9fb2fef6e Merge pull request 'Modification of Microsoft Academic Graph Mapping' (#435) from mag_only_doi into beta 
Reviewed-on: #435
 2024-05-21 13:48:42 +02:00
Claudio Atzori 834461ba26 [graph provision]fixed wf definition, revised serialization of the usage counts measures 2024-05-21 13:48:06 +02:00
Sandro La Bruzzo 032bcc8279 since last beta workflow we decide to introduce in the graph only MAG item with DOI and set them invisible ( this should be the same behaviour of the previous DOIBoost mapping). 
This commit apply this type of mapping
 2024-05-20 09:24:15 +02:00
Claudio Atzori 92f018d196 [graph provision] fixed path pointing to an intermediate data store in the working directory 2024-05-15 15:39:18 +02:00
Claudio Atzori 0611c81a2f [graph provision] using Qualifier.classNames to populate the correponsing fields in the JSON payload 2024-05-15 15:33:10 +02:00
Michele Artini 2b3b5fe9a1 oai finalization and test 2024-05-15 14:13:16 +02:00
Claudio Atzori 1efe7f7e39 [graph provision] upgrade to dhp-schema:6.1.2, included project.oamandatepublications in the JSON payload mapping, fixed serialisation of the usageCounts measures 2024-05-14 12:39:31 +02:00
Claudio Atzori 53e7bb4336 Merge pull request 'rest-collector-plugin-with-retry' (#432) from rest-collector-plugin-with-retry into beta 
Reviewed-on: #432
 2024-05-10 09:02:33 +02:00
Claudio Atzori f7d56e2ef2 Merge branch 'beta' into rest-collector-plugin-with-retry 2024-05-10 09:02:21 +02:00
Claudio Atzori c1237ab39e Merge pull request 'Fixes in Graph Provision' (#434) from beta_provision_relation into beta 
Reviewed-on: #434
 2024-05-09 14:15:05 +02:00
Claudio Atzori dc3a5858f7 Merge branch 'beta' into beta_provision_relation 2024-05-09 14:14:43 +02:00
Claudio Atzori 55f39f7850 [graph provision] adds the possibility to validate the XML records before storing them via the validateXML parameter 2024-05-09 14:06:04 +02:00
Claudio Atzori 39a2afe8b5 [graph provision] fixed XML serialization of the usage counts measures, renamed workflow actions to better reflect their role 2024-05-09 13:54:42 +02:00
Claudio Atzori 908ed9da7a Merge pull request 'Various fixes in the stats wf' (#430) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #430
 2024-05-08 13:41:02 +02:00
Antonis Lempesis 0cada3cc8f every step is run in the analytics queue. Hardcoded for now, will make a parameter later 2024-05-08 13:42:53 +03:00
Antonis Lempesis 90a4fb3547 fixed typos 2024-05-08 13:17:58 +03:00
Claudio Atzori 18aa323ee9 cleanup unused classes, adjustments in the oozie wf definition 2024-05-08 11:36:46 +02:00
Michele Artini c9a327bc50 refactoring of gzip method 2024-05-08 11:34:08 +02:00
Michele Artini e234848af8 oaf record: xpath for root 2024-05-08 10:00:53 +02:00
Claudio Atzori b4e3389432 fixed property mapping creating the RelatedEntity transient objects. spark cores & memory adjustments. Code formatting 2024-05-07 16:25:17 +02:00
Giambattista Bloisi 711048ceed PrepareRelationsJob rewritten to use Spark Dataframe API and Windowing functions 2024-05-07 15:44:33 +02:00
Michele Artini 70bf6ac415 oai exporter tests 2024-05-07 09:36:26 +02:00
Michele Artini aa40e53c19 oai exporter parameters 2024-05-07 08:01:19 +02:00
Michele Artini ed052a3476 job for the population of the oai database 2024-05-06 16:08:33 +02:00
Claudio Atzori 26363060ed fixed id prefix creation for the fosnodoi records, again 2024-05-03 15:53:52 +02:00
Claudio Atzori 0486227185 [cleaning] deactivating the cleaning of FOS subjects found in the metadata provided by repositories 2024-05-03 14:31:12 +02:00
Claudio Atzori a5d13d5d27 code formatting 2024-05-03 14:14:34 +02:00
Claudio Atzori e1a0fb8933 fixed id prefix creation for the fosnodoi records 2024-05-03 14:14:18 +02:00
Giambattista Bloisi 69c5efbd8b Fix: when applying enrichments with no instance information the resulting merge entity was generated with no instance instead of keeping the original information 2024-05-03 13:57:56 +02:00
Claudio Atzori 00ad21d814 Merge pull request 'preparations for dhp-common beta release 1.2.5' (#433) from beta-release-1.2.5 into beta 
Reviewed-on: #433
 2024-05-02 11:28:19 +02:00
Claudio Atzori 4355f64810 reverted to version 1.2.5-SNAPSHOT 2024-05-02 11:23:53 +02:00
Claudio Atzori 66680b8b9a refactoring of common utilities 2024-05-02 11:16:58 +02:00
Claudio Atzori dcf23b3d06 Merge branch 'beta' into beta-release-1.2.5 2024-05-02 10:01:49 +02:00
Michele Artini f4068de298 code reindent + tests 2024-05-02 09:51:33 +02:00
Claudio Atzori 11bd89e132 [enrichment] use sparkExecutorMemory to define also the memoryOverhead 2024-05-01 08:32:59 +02:00
Claudio Atzori e96c2c1606 [ranking wf] set spark.executor.memoryOverhead to fine tune the resource consumption 2024-04-30 16:23:25 +02:00
Claudio Atzori 50c18f7a0b [dedup wf] revised memory settings to address the increased volume of input contents 2024-04-30 12:34:16 +02:00
Michele Artini 2615136efc added a retry mechanism 2024-04-30 11:58:42 +02:00
Claudio Atzori c08a58bba8 Merge pull request 'Miscellaneous related to changes in MergeUtils' (#429) from misc_fixes_merge_entities into beta 
Reviewed-on: #429
 2024-04-24 08:55:37 +02:00
Claudio Atzori e2937db385 Merge branch 'beta' into misc_fixes_merge_entities 2024-04-24 08:55:28 +02:00
Giambattista Bloisi 1878199dae Miscellaneous fixes: 
- in Merge By ID pick by preference those records coming from delegated Authorities
- fix various tests
- close spark session in SparkCreateSimRels
 2024-04-24 08:12:45 +02:00
Lampros Smyrnaios 49af2e5740 Miscellaneous updates to the copying operation to Impala Cluster: 
- Update the algorithm for creating views that depend on other views; overcome some bash-instabilities.
- Upon any error, fail the whole process, not just the current DB-creation, as those errors usually indicate a bug in the initial DB-creation, that should be fixed immediately.
- Enhance parallel-copy of large files by "hadoop distcp" command.
- Reduce the "invalidate metadata" commands to just the current DB's tables, in order to eliminate the general overhead on Impala.
- Show the number of tables and views in the logs.
- Fix some log-messages.
 2024-04-23 17:15:04 +03:00
Antonis Lempesis d2649a1429 increased the jvm ram 2024-04-23 16:03:16 +03:00
Claudio Atzori c3053ef34d using version 1.2.5-beta for the release 2024-04-23 14:52:32 +02:00