 Alessia Bardi
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32e81c2d89
|
non validated rel has null value in validated field
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2021-02-16 11:01:42 +01:00 |
|
Alessia Bardi
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09fc7e2f78
|
serialization of validated flag on relationships
|
2021-02-10 11:22:09 +01:00 |
 Claudio Atzori
|
62bd3c53ee
|
Merge branch 'master' into provision_indexing
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2021-02-09 15:46:26 +01:00 |
|
Claudio Atzori
|
1506f49052
|
Xml record serialization for author PIDs: 1) only one value per PID type is allowed; 2) orcid prevails over orcid_pending
|
2020-12-14 11:14:03 +01:00 |
|
Claudio Atzori
|
d9532446eb
|
imported more diffs from master branch; code formatting
|
2020-12-10 16:14:16 +01:00 |
|
Claudio Atzori
|
12e2f930c8
|
resolved conflicts
|
2020-12-10 10:57:39 +01:00 |
|
Claudio Atzori
|
ff72fcd91a
|
allow orcid_pending to be percolate to the XML graph serialization
|
2020-12-09 19:04:50 +01:00 |
|
Claudio Atzori
|
211aa04726
|
allow orcid_pending to be percolate to the XML graph serialization
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2020-12-09 18:08:51 +01:00 |
|
Claudio Atzori
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d48f388fb2
|
Merge branch 'provision_indexing'
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2020-11-19 15:59:55 +01:00 |
|
Claudio Atzori
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7c9feaf9e7
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project attributes removed from the XML record serialization: contactfullname, contactfax, contactphone, contactemail
|
2020-11-19 15:26:20 +01:00 |
|
Claudio Atzori
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3f34757c63
|
merged from master
|
2020-11-19 14:34:54 +01:00 |
|
Claudio Atzori
|
0374d34c3e
|
introduced configuration param outputFormat: HDFS | SOLR
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2020-11-19 10:34:28 +01:00 |
|
Claudio Atzori
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d9e07a242b
|
extended XmlIndexingJob to accept an optional parameter: outputPath. When present, forces the job to write its output on the specified HDFS location
|
2020-11-18 14:34:55 +01:00 |
|
Claudio Atzori
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29dcff0f34
|
spark complains about missing classes, so here they are again
|
2020-11-18 14:32:32 +01:00 |
|
Claudio Atzori
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8177ce7939
|
test for XmlIndexingJob based on a local miniSolrCluster
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2020-11-18 10:58:05 +01:00 |
|
Claudio Atzori
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2bed29eb09
|
WIP: added oozie workflow for grouping graph entities by id
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2020-11-13 10:05:12 +01:00 |
|
Claudio Atzori
|
9b0fb9e958
|
merged from master
|
2020-11-12 09:27:12 +01:00 |
|
Claudio Atzori
|
822971f54f
|
no need to filter relations in CreateRelatedEntitiesJob_phase1; replaced 'left outer' join with 'left' join in CreateRelatedEntitiesJob_phase2; cleanup;
|
2020-11-12 09:22:59 +01:00 |
|
Claudio Atzori
|
18d9aad70c
|
improved documentation in dhp-graph-provision
|
2020-11-10 11:48:55 +01:00 |
|
Claudio Atzori
|
58f28296ea
|
ProvisionConstants moved as ModelHardLimits in dhp-common and applied to truncate long abstracts (len > 150000). Further filtering for empty PID values
|
2020-10-30 10:56:42 +01:00 |
|
Claudio Atzori
|
1871d1c6f6
|
solve error java.lang.NoSuchFieldError: INSTANCE when instantiating Solr client
|
2020-08-14 11:18:30 +02:00 |
|
Claudio Atzori
|
3a11a387a9
|
data provision workflow enhancement: added nodes to perform DELETE BY QUERY before the indexing begins and COMMIT after the indexing is completed
|
2020-08-03 14:28:08 +02:00 |
|
Claudio Atzori
|
cc5d13da85
|
introduced parameter shouldIndex (true|false)
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2020-07-16 13:46:39 +02:00 |
|
Claudio Atzori
|
b098cc3cbe
|
avoid repeating identical values for fields: source, description
|
2020-07-16 13:45:53 +02:00 |
|
Claudio Atzori
|
7d6e269b40
|
reverted CreateRelatedEntitiesJob_phase1 to its previous state
|
2020-07-13 22:54:04 +02:00 |
|
Claudio Atzori
|
8e97598eb4
|
avoid to NPE in case of null instances
|
2020-07-13 20:46:14 +02:00 |
|
Claudio Atzori
|
06c1913062
|
added different limits for grouping by source and by target, incremented spark.sql.shuffle.partitions for the join operations
|
2020-07-10 19:03:33 +02:00 |
|
Claudio Atzori
|
4c3836f62e
|
materialize the related entities before joining them
|
2020-07-10 19:00:44 +02:00 |
|
Claudio Atzori
|
b21866a2da
|
allow to set different to relations cut points by source and by target; adjusted weight assigned to relationship types
|
2020-07-10 13:59:48 +02:00 |
|
Claudio Atzori
|
ff4d6214f1
|
experimenting with pruning of relations
|
2020-07-10 10:06:41 +02:00 |
|
Claudio Atzori
|
b383ed42fa
|
pass optional parameter relationFilter to the PrepareRelationJob implementation
|
2020-07-07 14:21:28 +02:00 |
|
Claudio Atzori
|
7817338e05
|
added test to verify the relation pre-processing
|
2020-06-26 17:58:33 +02:00 |
|
Claudio Atzori
|
8d59fdf34e
|
WIP: dataset based PrepareRelationsJob
|
2020-06-26 14:32:58 +02:00 |
|
Claudio Atzori
|
216975c4ec
|
restored complete provision workflow
|
2020-06-25 12:55:52 +02:00 |
|
Claudio Atzori
|
93f627ea51
|
code formatting
|
2020-06-25 12:54:21 +02:00 |
|
Claudio Atzori
|
e62333192c
|
WIP: prepare relation job
|
2020-06-25 12:22:18 +02:00 |
|
Claudio Atzori
|
6933ec11fb
|
WIP: prepare relation job
|
2020-06-25 11:04:12 +02:00 |
|
Claudio Atzori
|
69b0391708
|
WIP: prepare relation job
|
2020-06-25 10:19:56 +02:00 |
|
Claudio Atzori
|
46e76affeb
|
WIP: prepare relation job
|
2020-06-24 19:01:15 +02:00 |
|
Claudio Atzori
|
0e723d378b
|
added default from vocab for missing instance.refereed; remove spurious prefixes from orcid values; WIP: prepare relation job
|
2020-06-24 18:34:42 +02:00 |
|
Claudio Atzori
|
463489f59f
|
code formatting
|
2020-06-12 12:03:25 +02:00 |
|
Claudio Atzori
|
4bcad1c9c3
|
Merge branch 'graph_cleaning'
|
2020-06-12 11:40:25 +02:00 |
|
Alessia Bardi
|
e79943965b
|
Fixes #5604: field oamandatepublications in XML
|
2020-06-11 12:49:31 +02:00 |
|
Claudio Atzori
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a2fdf85ba1
|
WIP: graph cleaner implementation
|
2020-06-09 19:52:53 +02:00 |
|
Claudio Atzori
|
05f269a1c0
|
kryo based parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob
|
2020-06-01 00:32:42 +02:00 |
|
Claudio Atzori
|
6f5f498c78
|
restored common properties driving executor-cores and executor-memory in join_organization_relations wf node
|
2020-05-29 11:22:00 +02:00 |
|
Claudio Atzori
|
b2f9564f13
|
WIP: fixed PrepareRelationsJob; parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob
|
2020-05-29 10:58:15 +02:00 |
|
Claudio Atzori
|
a57965a3ea
|
limiting the dimensions of outliers
|
2020-05-28 17:36:37 +02:00 |
|
Claudio Atzori
|
821be1f8b6
|
experimental implementation of custom aggregation using kryo encoders
|
2020-05-28 13:53:13 +02:00 |
|
Claudio Atzori
|
83504ecace
|
limiting the maximum number of authors allowed in XML records to MAX_AUTHORS = 200; authors with ORCID can exceed that limit
|
2020-05-28 13:52:30 +02:00 |
|
Claudio Atzori
|
ef11593068
|
JoinedEntity.links defined as empty list by default
|
2020-05-28 13:50:44 +02:00 |
|
Claudio Atzori
|
5dea155a87
|
increased number of partitions produced by the join_all_entities phase as well as spark.sql.shuffle.partitions in adjancency_lists phase
|
2020-05-28 13:49:59 +02:00 |
|
Claudio Atzori
|
cfd753217c
|
repartition the join_entities in 24k files
|
2020-05-27 12:44:01 +02:00 |
|
Claudio Atzori
|
2f1a623d09
|
sync from master branch
|
2020-05-27 12:39:58 +02:00 |
|
Claudio Atzori
|
8047d16dd9
|
added RDD based adjacency list creation procedure
|
2020-05-27 12:38:12 +02:00 |
|
Claudio Atzori
|
f057dcdf65
|
limit the max number of externalreferences to MAX_EXTERNAL_ENTITIES
|
2020-05-27 12:37:33 +02:00 |
|
Claudio Atzori
|
4e36d689dd
|
fixed XML serialization for children sub-elements (duplicates & externalreferences)
|
2020-05-26 18:30:40 +02:00 |
|
Claudio Atzori
|
b8e541a454
|
fixing repeated organization.websiteurl in organization entities (#5645) as well as project.ecinternationalorganizationeurinterests
|
2020-05-26 10:30:09 +02:00 |
|
Claudio Atzori
|
925d933204
|
making XmlRecordFactory immune to graph encoding changes (mostly to avoid NPEs)
|
2020-05-22 08:50:44 +02:00 |
|
Claudio Atzori
|
b33dd58be4
|
replaced parameter 'reuseRecords' with 'resumeFrom', allowing to restart the provision workflow execution from any step, useful for manual submissions or debugging
|
2020-05-22 08:50:06 +02:00 |
|
Claudio Atzori
|
dbfb9c19fe
|
minor changes
|
2020-05-21 10:00:14 +02:00 |
|
Claudio Atzori
|
d7d2a0637f
|
added extra parameters to the provision indexing workflow
|
2020-05-20 14:55:38 +02:00 |
|
Claudio Atzori
|
0bdfbb0a57
|
reintroduced RDD based relation cut off procedure
|
2020-05-19 15:02:21 +02:00 |
|
Claudio Atzori
|
8c67073a07
|
force speculative execution to false
|
2020-05-08 09:42:21 +02:00 |
|
Claudio Atzori
|
bac37b3973
|
fixed children expansion in XML records
|
2020-05-04 11:51:17 +02:00 |
|
Claudio Atzori
|
439c6255a2
|
cleanup
|
2020-04-29 19:09:07 +02:00 |
|
Claudio Atzori
|
6f5b899038
|
reformatted code according to the updated style descriptor
|
2020-04-28 11:23:29 +02:00 |
|
Claudio Atzori
|
a0bdbacdae
|
switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin
|
2020-04-27 14:52:31 +02:00 |
|
Claudio Atzori
|
7a3f8085f7
|
switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin
|
2020-04-27 14:45:40 +02:00 |
|
Claudio Atzori
|
1e7583c5a6
|
filtered invisible records in data provision workflow
|
2020-04-23 07:51:34 +02:00 |
|
Claudio Atzori
|
0b55795d4d
|
small adjustments in the provisioning workflow
|
2020-04-21 16:15:04 +02:00 |
|
Claudio Atzori
|
d772d967aa
|
restored changes from master branch
|
2020-04-20 18:53:06 +02:00 |
miconis
|
4da13e4570
|
Revert "Merge branch 'master' into deduptesting"
This reverts commit 772f75d167, reversing
changes made to 5f45f2c77f.
|
2020-04-20 16:04:49 +02:00 |
|
Claudio Atzori
|
d714bfb4d4
|
collectedfrom field moved in common parent class Oaf.java
|
2020-04-20 12:25:19 +02:00 |
|
Claudio Atzori
|
ad7a131b18
|
introduced common project code formatting plugin, works on the commit hook, based on https://github.com/Cosium/git-code-format-maven-plugin, applied to each java class in the project
|
2020-04-18 12:42:58 +02:00 |
|
Claudio Atzori
|
d74e128aa6
|
Utility classes moved in dhp-common and dhp-schemas
|
2020-04-07 11:56:22 +02:00 |
|
Claudio Atzori
|
1a1a026a18
|
we do expect to find field bestaccessright already defined. No need to add it again
|
2020-04-07 08:55:33 +02:00 |
|
Claudio Atzori
|
fbdd18a96b
|
using dataset based relation preparation procedure
|
2020-04-07 08:54:39 +02:00 |
|
Claudio Atzori
|
77f59b1b10
|
dataset based provision WIP
|
2020-04-06 19:37:27 +02:00 |
|
Claudio Atzori
|
e355961997
|
dataset based provision WIP
|
2020-04-06 17:34:25 +02:00 |
|
Claudio Atzori
|
ca345aaad3
|
dataset based provision WIP
|
2020-04-06 15:33:31 +02:00 |
|
Claudio Atzori
|
c8f4b95464
|
dataset based provision WIP
|
2020-04-06 08:59:58 +02:00 |
|
Claudio Atzori
|
eb2f5f3198
|
dataset based provision WIP
|
2020-04-04 17:41:31 +02:00 |
|
Claudio Atzori
|
3d1b637cab
|
dataset based provision WIP
|
2020-04-04 14:03:43 +02:00 |
|
Claudio Atzori
|
24b2c9012e
|
dataset based provision WIP
|
2020-04-02 18:44:09 +02:00 |
|
Claudio Atzori
|
daa26acc9d
|
dataset based provision WIP, fixed spark2EventLogDir
|
2020-04-02 16:15:50 +02:00 |
|
Claudio Atzori
|
9c7092416a
|
dataset based provision WIP
|
2020-04-01 19:07:30 +02:00 |
|
Claudio Atzori
|
1402eb1fe7
|
cleanup
|
2020-04-01 15:38:50 +02:00 |
|
Claudio Atzori
|
adcdd2d05e
|
WIP: reimplementing the adjacency list construction process using spark Datasets
|
2020-04-01 14:56:57 +02:00 |
|
Claudio Atzori
|
0fbec69b82
|
use oozie prepare statement to cleanup working directories
|
2020-03-30 19:48:41 +02:00 |
|
Claudio Atzori
|
f3f9affd49
|
allow dynamic executors to build XML records
|
2020-03-30 13:12:11 +02:00 |
|
Claudio Atzori
|
2e2d4c4c68
|
adjusted path to template resource
|
2020-03-30 13:11:49 +02:00 |
|
Claudio Atzori
|
673e744649
|
moved openaire specific implementations under dedicated package eu.dnetlib.dhp.oa
|
2020-03-27 10:42:17 +01:00 |
|
Claudio Atzori
|
abe8fb69a2
|
added global properties, moved postprocessing script inside the oozie_app directory
|
2020-03-18 15:43:54 +01:00 |
|
Claudio Atzori
|
aeb01fa353
|
reading from newline delimited json textfiles instead of sequence files
|
2020-03-17 11:57:24 +01:00 |
|
Claudio Atzori
|
a3f184fd3f
|
added field websiteurl in related organizations
|
2020-03-10 17:08:58 +01:00 |
|
Claudio Atzori
|
0e95544495
|
fixed serialization for datasource subjects
|
2020-03-10 17:07:44 +01:00 |
|
Claudio Atzori
|
5e342a555c
|
no need to compute the inverse relClass, fixed text() in xpath expressions
|
2020-03-05 12:51:48 +01:00 |
|
Claudio Atzori
|
6ec04d4e02
|
specified column used to perform the join operation in the javadoc
|
2020-03-05 12:50:38 +01:00 |
|
Claudio Atzori
|
1e563bc15e
|
introduced distinct properties driving the resouce usage for the XML record creation and the indexing phase
|
2020-03-04 10:55:11 +01:00 |