 Alessia Bardi
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b924276e18
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tests to generate records for the EOSC-Future demo with the EOSC Jupyter Notebbok subject
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2021-09-24 17:11:56 +02:00 |
 Sandro La Bruzzo
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d4dadf6d77
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reduced max number of PID in Relatedentity
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2021-09-02 14:21:24 +02:00 |
|
Sandro La Bruzzo
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9f8a80deb7
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fixed wrong import of unresolved relation in openaire
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2021-09-01 14:16:27 +02:00 |
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Alessia Bardi
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3762b17f7b
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added VERSIOn and PART relationship and re-ordered according to my personal and obviously possibly biased
ordering
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2021-08-31 20:20:05 +02:00 |
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Alessia Bardi
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931f430129
|
Merge branch 'beta' into datasource_model_eosc_beta
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2021-08-23 11:57:21 +02:00 |
 Claudio Atzori
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9f4db73f30
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updated/fixed unit tests
|
2021-08-11 15:02:51 +02:00 |
|
Claudio Atzori
|
2ee21da43b
|
suggestions from SonarLint
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2021-08-11 12:13:22 +02:00 |
|
Sandro La Bruzzo
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6358f92c3a
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added sleep to solve problem of lost request of creating index
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2021-07-30 08:54:37 +02:00 |
|
Claudio Atzori
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c53d106e80
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[provision] lowercase relation filter
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2021-07-29 13:57:00 +02:00 |
|
Sandro La Bruzzo
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3721df7aa6
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refactoring create actionset of scholexplorer, moved on package dhp-aggregation
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2021-07-29 10:45:35 +02:00 |
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Sandro La Bruzzo
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3d8f0f629b
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implemented workflow of creation action set for scholexplorer
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2021-07-28 16:15:34 +02:00 |
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Alessia Bardi
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df8715a1ec
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format code after mvn compile
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2021-07-28 11:58:26 +02:00 |
 Michele Artini
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3e2a2d6e71
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added new fields in xml
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2021-07-28 11:56:55 +02:00 |
|
Alessia Bardi
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c806387d4b
|
tests for enermaps
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2021-07-28 11:54:36 +02:00 |
|
Claudio Atzori
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2fff24df55
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code formatting
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2021-07-28 11:34:19 +02:00 |
|
Sandro La Bruzzo
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16c91203bd
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implemented workflow of creation action set for scholexplorer
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2021-07-28 10:30:49 +02:00 |
|
Michele Artini
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52e2315ba2
|
removed trick for datasourcetypeui
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2021-07-28 10:23:00 +02:00 |
|
Claudio Atzori
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10d7b4f0b4
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filtering 'old' OpenAIRE ids from the entity.originalId[] array in the OAF -> XML searialization procedure
|
2021-07-20 11:52:05 +02:00 |
|
Sandro La Bruzzo
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bbe8193930
|
merged stable ids
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2021-07-12 17:00:43 +02:00 |
|
Sandro La Bruzzo
|
57c74c73c6
|
fixed mistakes in oozie workflow
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2021-07-09 12:28:09 +02:00 |
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Sandro La Bruzzo
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61ccb54fde
|
removed wrong loop on oozie wf
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2021-07-09 12:17:57 +02:00 |
|
Sandro La Bruzzo
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9f5a0f3ab6
|
moved wf indexing of Scholexplorer in dhp-graph-provision
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2021-07-09 12:06:43 +02:00 |
|
Claudio Atzori
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96238152cb
|
added serialization for alternateIdentifiers and pids within each record instance
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2021-05-28 16:57:30 +02:00 |
|
Claudio Atzori
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23b8883ab1
|
applied intellij code cleanup
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2021-05-14 10:58:12 +02:00 |
|
Claudio Atzori
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609eb711b3
|
IndexRecordTransformerTest for producing a record that can be manually submitted to solr
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2021-05-13 16:13:28 +02:00 |
|
Claudio Atzori
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1517bf7c92
|
IndexRecordTransformerTest for producing a record that can be manually submitted to solr
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2021-05-13 16:11:22 +02:00 |
|
Claudio Atzori
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5afa7d3e0c
|
core utilities in dhp-common moved in external module dhp-schemas
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2021-04-27 15:44:01 +02:00 |
|
Claudio Atzori
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1e7e5180fa
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[Graph model] updated definition of ExternalReference: added alternateLabel, removed description (#6503)
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2021-04-02 12:32:12 +02:00 |
|
Claudio Atzori
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7941d7be29
|
WIP: using common definitions from ModelConstants
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2021-03-31 18:33:57 +02:00 |
|
Claudio Atzori
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72ce741ea6
|
WIP: using common definitions from ModelConstants
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2021-03-31 17:07:13 +02:00 |
|
Sandro La Bruzzo
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c73072079d
|
fix conflicts
|
2021-03-22 16:36:31 +01:00 |
|
Claudio Atzori
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8d2bb24512
|
merged from master
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2021-03-08 15:44:34 +01:00 |
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Alessia Bardi
|
32e81c2d89
|
non validated rel has null value in validated field
|
2021-02-16 11:01:42 +01:00 |
|
Claudio Atzori
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29c6f7e255
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classes related to the collection workflow moved into common package; implemented MongoDB collection plugins
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2021-02-12 12:31:02 +01:00 |
|
Claudio Atzori
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b34b5a39ca
|
index field authoridtypevalue mixes up different author id-type value pairs, dropped in favour of orcidtypevalue
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2021-02-11 09:36:04 +01:00 |
|
Alessia Bardi
|
986dd969d3
|
use the proper import for Lists
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2021-02-10 12:03:54 +01:00 |
|
Alessia Bardi
|
09fc7e2f78
|
serialization of validated flag on relationships
|
2021-02-10 11:22:09 +01:00 |
|
Claudio Atzori
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82e6c50f3f
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updated solr fields (authoridtypevalue, resultsubject, resultresourcetypename)
|
2021-02-09 16:27:04 +01:00 |
|
Claudio Atzori
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62bd3c53ee
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Merge branch 'master' into provision_indexing
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2021-02-09 15:46:26 +01:00 |
|
Claudio Atzori
|
1506f49052
|
Xml record serialization for author PIDs: 1) only one value per PID type is allowed; 2) orcid prevails over orcid_pending
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2020-12-14 11:14:03 +01:00 |
|
Claudio Atzori
|
61cd129ded
|
XML serialisation test
|
2020-12-11 12:44:53 +01:00 |
|
Claudio Atzori
|
ce7a319e01
|
using the correct assertion import
|
2020-12-11 12:44:17 +01:00 |
|
Claudio Atzori
|
d9532446eb
|
imported more diffs from master branch; code formatting
|
2020-12-10 16:14:16 +01:00 |
|
Claudio Atzori
|
12e2f930c8
|
resolved conflicts
|
2020-12-10 10:57:39 +01:00 |
|
Claudio Atzori
|
ff72fcd91a
|
allow orcid_pending to be percolate to the XML graph serialization
|
2020-12-09 19:04:50 +01:00 |
|
Claudio Atzori
|
211aa04726
|
allow orcid_pending to be percolate to the XML graph serialization
|
2020-12-09 18:08:51 +01:00 |
|
Claudio Atzori
|
026ad40633
|
disabled test
|
2020-12-07 13:50:01 +01:00 |
|
Claudio Atzori
|
cfb55effd9
|
code formatting
|
2020-12-02 11:23:49 +01:00 |
|
Alessia Bardi
|
2d15667b4a
|
testing XML generation from json object (case AMS ACTA)
|
2020-12-02 10:16:26 +01:00 |
|
Claudio Atzori
|
d48f388fb2
|
Merge branch 'provision_indexing'
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2020-11-19 15:59:55 +01:00 |
|
Claudio Atzori
|
7c9feaf9e7
|
project attributes removed from the XML record serialization: contactfullname, contactfax, contactphone, contactemail
|
2020-11-19 15:26:20 +01:00 |
|
Claudio Atzori
|
3f34757c63
|
merged from master
|
2020-11-19 14:34:54 +01:00 |
|
Claudio Atzori
|
0374d34c3e
|
introduced configuration param outputFormat: HDFS | SOLR
|
2020-11-19 10:34:28 +01:00 |
|
Claudio Atzori
|
5218718e8b
|
updated set of fields from the MDFormatDSResourceType on PROD
|
2020-11-18 15:00:41 +01:00 |
|
Claudio Atzori
|
d9e07a242b
|
extended XmlIndexingJob to accept an optional parameter: outputPath. When present, forces the job to write its output on the specified HDFS location
|
2020-11-18 14:34:55 +01:00 |
|
Claudio Atzori
|
29dcff0f34
|
spark complains about missing classes, so here they are again
|
2020-11-18 14:32:32 +01:00 |
|
Claudio Atzori
|
8177ce7939
|
test for XmlIndexingJob based on a local miniSolrCluster
|
2020-11-18 10:58:05 +01:00 |
|
Claudio Atzori
|
2bed29eb09
|
WIP: added oozie workflow for grouping graph entities by id
|
2020-11-13 10:05:12 +01:00 |
|
Claudio Atzori
|
9b0fb9e958
|
merged from master
|
2020-11-12 09:27:12 +01:00 |
|
Claudio Atzori
|
822971f54f
|
no need to filter relations in CreateRelatedEntitiesJob_phase1; replaced 'left outer' join with 'left' join in CreateRelatedEntitiesJob_phase2; cleanup;
|
2020-11-12 09:22:59 +01:00 |
|
Claudio Atzori
|
18d9aad70c
|
improved documentation in dhp-graph-provision
|
2020-11-10 11:48:55 +01:00 |
|
Claudio Atzori
|
58f28296ea
|
ProvisionConstants moved as ModelHardLimits in dhp-common and applied to truncate long abstracts (len > 150000). Further filtering for empty PID values
|
2020-10-30 10:56:42 +01:00 |
|
Claudio Atzori
|
1871d1c6f6
|
solve error java.lang.NoSuchFieldError: INSTANCE when instantiating Solr client
|
2020-08-14 11:18:30 +02:00 |
|
Claudio Atzori
|
3a11a387a9
|
data provision workflow enhancement: added nodes to perform DELETE BY QUERY before the indexing begins and COMMIT after the indexing is completed
|
2020-08-03 14:28:08 +02:00 |
|
Claudio Atzori
|
cc5d13da85
|
introduced parameter shouldIndex (true|false)
|
2020-07-16 13:46:39 +02:00 |
|
Claudio Atzori
|
b098cc3cbe
|
avoid repeating identical values for fields: source, description
|
2020-07-16 13:45:53 +02:00 |
|
Claudio Atzori
|
7d6e269b40
|
reverted CreateRelatedEntitiesJob_phase1 to its previous state
|
2020-07-13 22:54:04 +02:00 |
|
Claudio Atzori
|
8e97598eb4
|
avoid to NPE in case of null instances
|
2020-07-13 20:46:14 +02:00 |
|
Claudio Atzori
|
06c1913062
|
added different limits for grouping by source and by target, incremented spark.sql.shuffle.partitions for the join operations
|
2020-07-10 19:03:33 +02:00 |
|
Claudio Atzori
|
4c3836f62e
|
materialize the related entities before joining them
|
2020-07-10 19:00:44 +02:00 |
|
Claudio Atzori
|
b21866a2da
|
allow to set different to relations cut points by source and by target; adjusted weight assigned to relationship types
|
2020-07-10 13:59:48 +02:00 |
|
Claudio Atzori
|
ff4d6214f1
|
experimenting with pruning of relations
|
2020-07-10 10:06:41 +02:00 |
|
Claudio Atzori
|
b383ed42fa
|
pass optional parameter relationFilter to the PrepareRelationJob implementation
|
2020-07-07 14:21:28 +02:00 |
|
Claudio Atzori
|
d380b85246
|
unit test for the preparation of the relations
|
2020-07-02 12:42:13 +02:00 |
|
Claudio Atzori
|
7817338e05
|
added test to verify the relation pre-processing
|
2020-06-26 17:58:33 +02:00 |
|
Claudio Atzori
|
8d59fdf34e
|
WIP: dataset based PrepareRelationsJob
|
2020-06-26 14:32:58 +02:00 |
|
Claudio Atzori
|
216975c4ec
|
restored complete provision workflow
|
2020-06-25 12:55:52 +02:00 |
|
Claudio Atzori
|
93f627ea51
|
code formatting
|
2020-06-25 12:54:21 +02:00 |
|
Claudio Atzori
|
e62333192c
|
WIP: prepare relation job
|
2020-06-25 12:22:18 +02:00 |
|
Claudio Atzori
|
6933ec11fb
|
WIP: prepare relation job
|
2020-06-25 11:04:12 +02:00 |
|
Sandro La Bruzzo
|
a6c0faac70
|
added test to verify secondary sorting
|
2020-06-25 10:48:15 +02:00 |
|
Claudio Atzori
|
69b0391708
|
WIP: prepare relation job
|
2020-06-25 10:19:56 +02:00 |
|
Claudio Atzori
|
46e76affeb
|
WIP: prepare relation job
|
2020-06-24 19:01:15 +02:00 |
|
Claudio Atzori
|
0e723d378b
|
added default from vocab for missing instance.refereed; remove spurious prefixes from orcid values; WIP: prepare relation job
|
2020-06-24 18:34:42 +02:00 |
|
Claudio Atzori
|
463489f59f
|
code formatting
|
2020-06-12 12:03:25 +02:00 |
|
Claudio Atzori
|
4bcad1c9c3
|
Merge branch 'graph_cleaning'
|
2020-06-12 11:40:25 +02:00 |
|
Alessia Bardi
|
e79943965b
|
Fixes #5604: field oamandatepublications in XML
|
2020-06-11 12:49:31 +02:00 |
|
Claudio Atzori
|
67c7b31ba6
|
Merge branch 'master' into graph_cleaning
|
2020-06-10 15:00:35 +02:00 |
|
Claudio Atzori
|
ce12f236bb
|
disabled test, need to need to update the joined_entity.json file
|
2020-06-09 20:07:36 +02:00 |
|
Claudio Atzori
|
a2fdf85ba1
|
WIP: graph cleaner implementation
|
2020-06-09 19:52:53 +02:00 |
|
Claudio Atzori
|
05f269a1c0
|
kryo based parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob
|
2020-06-01 00:32:42 +02:00 |
|
Claudio Atzori
|
6f5f498c78
|
restored common properties driving executor-cores and executor-memory in join_organization_relations wf node
|
2020-05-29 11:22:00 +02:00 |
|
Claudio Atzori
|
b2f9564f13
|
WIP: fixed PrepareRelationsJob; parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob
|
2020-05-29 10:58:15 +02:00 |
|
Claudio Atzori
|
a57965a3ea
|
limiting the dimensions of outliers
|
2020-05-28 17:36:37 +02:00 |
|
Claudio Atzori
|
821be1f8b6
|
experimental implementation of custom aggregation using kryo encoders
|
2020-05-28 13:53:13 +02:00 |
|
Claudio Atzori
|
83504ecace
|
limiting the maximum number of authors allowed in XML records to MAX_AUTHORS = 200; authors with ORCID can exceed that limit
|
2020-05-28 13:52:30 +02:00 |
|
Claudio Atzori
|
ef11593068
|
JoinedEntity.links defined as empty list by default
|
2020-05-28 13:50:44 +02:00 |
|
Claudio Atzori
|
5dea155a87
|
increased number of partitions produced by the join_all_entities phase as well as spark.sql.shuffle.partitions in adjancency_lists phase
|
2020-05-28 13:49:59 +02:00 |
|
Claudio Atzori
|
fdd54bad1c
|
code formatting
|
2020-05-27 19:31:54 +02:00 |
|
Claudio Atzori
|
cfd753217c
|
repartition the join_entities in 24k files
|
2020-05-27 12:44:01 +02:00 |