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4071 Commits

Author SHA1 Message Date
Miriam Baglioni 0a5c6010b0 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-01-13 16:14:46 +01:00
dimitrispie 4d7553c9f1 Bug fixes 2023-01-12 17:19:19 +02:00
dimitrispie dd70c32ad7 Bug fixes 2023-01-12 17:18:05 +02:00
dimitrispie 51f7ab5864 Bug fixes 2023-01-12 17:15:06 +02:00
dimitrispie 34d4bf727c Bug fixes 2023-01-12 11:28:37 +02:00
dimitrispie 43f6d4f296 -Monitor DB workflow 2023-01-12 11:26:47 +02:00
dimitrispie 686580a220 - New Monitor DB workflow 
- New Organization added
 2023-01-12 11:18:03 +02:00
Claudio Atzori 0a58bc7ba7 [broker] prevent NPEs 2023-01-11 14:44:14 +01:00
Claudio Atzori 04cb96001c [broker] d40e20f437 adapted to the beta graph model 2023-01-11 10:10:12 +01:00
Michele Artini 91b845f611 Considering instance pids and alteternative identifiers 2023-01-11 09:58:54 +01:00
Miriam Baglioni 1f367122e4 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-01-11 09:47:44 +01:00
Michele Artini 7b7520850b fixed an invalid char 2023-01-11 09:22:18 +01:00
Miriam Baglioni d6895f0387 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-01-09 17:28:38 +01:00
dimitrispie becb242c17 Monitor DB only Workflow 2023-01-04 16:50:29 +02:00
dimitrispie dcb958e146 Changes to execute the stats wf only in hive 2023-01-04 11:39:01 +02:00
dimitrispie 592013d5dd Added more steps in decision node 2022-12-23 09:43:16 +02:00
dimitrispie 2a4bf32d4c Merge branch 'hive' of https://code-repo.d4science.org/antonis.lempesis/dnet-hadoop into hive 
# Conflicts:
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step13.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step14.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_1-definitions.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql
 2022-12-22 10:22:46 +02:00
dimitrispie 6449ff4207 1. Added a decision node to enables the workflow to make a selection on the execution path to follow 
2. Added new organization
3. Added 5 new tables from Eurostast
 2022-12-22 10:18:21 +02:00
Miriam Baglioni 8893389895 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-12-21 12:42:27 +01:00
Antonis Lempesis c8309fe18e addded command line params to allow hive actions to run 2022-12-21 12:41:33 +02:00
Antonis Lempesis 028873cc51 added new hive opts 2022-12-21 12:41:33 +02:00
Antonis Lempesis 1ddea4f442 removed 'stored as parquet' from views.. 2022-12-21 12:41:33 +02:00
Antonis Lempesis 2754c3dd62 moving data to impala cluster and creating shadow databases there 2022-12-21 12:41:29 +02:00
Antonis Lempesis 778a1a724f finished migration to hive only 2022-12-21 12:41:25 +02:00
Antonis Lempesis e84dd5fe26 first 2022-12-21 12:41:23 +02:00
Sandro La Bruzzo 3c9826f186 updated lines function to it's implementation linesWithSeparators.map(l => l.stripLineEnd) in this way we force scala plugin compiler to consider this pipeline scala code and not java.string.lines() pipeline 2022-12-21 11:21:17 +01:00
Claudio Atzori 6aa91204a5 [orcid propagation] skip empty directories 2022-12-20 14:15:46 +01:00
Miriam Baglioni 6674cccb94 [BulkTag] description of parameters more comprehensive for those who do not implement it 2022-12-16 15:33:20 +01:00
Miriam Baglioni f37113a941 [BulkTag] moving xquery to get community configuration in dedicated file 2022-12-16 15:32:26 +01:00
Miriam Baglioni 8685eaa706 [Clean Country] added test to verify remove of country 2022-12-16 15:31:25 +01:00
Miriam Baglioni dc0ec88a58 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-12-16 13:18:32 +01:00
Miriam Baglioni d791840b82 [Clean Country] added test to verify remove of country: 2022-12-16 13:18:29 +01:00
Claudio Atzori 7b80b24f82 [cleaning] country cleaning must use both PID and AlternateIdentifier fields 2022-12-15 14:49:04 +01:00
Claudio Atzori b8bafab8a0 [cleaning] improved vocabulary based mapping, specialization for the strict vocab cleaning 2022-12-12 14:43:03 +01:00
Sandro La Bruzzo 5e4866d033 implemented synch for single mdstore 2022-12-12 11:29:46 +01:00
Claudio Atzori c18b8048c3 [cleaning] avoid NPE 2022-12-10 11:41:38 +01:00
Claudio Atzori 8b44afe5e5 [cleaning] avoid NPE 2022-12-09 15:44:57 +01:00
Claudio Atzori 389dd25430 [cleaning] avoid NPE 2022-12-08 18:40:48 +01:00
Claudio Atzori 730228d73d [cleaning] align wf parameter names in test 2022-12-08 18:40:22 +01:00
Claudio Atzori 2094fa6db0 [cleaning] align wf parameter names 2022-12-08 17:22:26 +01:00
Miriam Baglioni a485a94956 [Cleaning] fixed parameter name in property file 2022-12-08 16:59:34 +01:00
Miriam Baglioni 3d99b78d94 [Cleaning] fixed error in parameter (workingPath to workingDir) 2022-12-08 10:25:02 +01:00
Claudio Atzori 1b8488976b code formatting 2022-12-07 10:45:38 +01:00
Claudio Atzori cd1b58483e [bulk tag] fixed Community configuration parsing to void NPE 2022-12-07 10:39:00 +01:00
Claudio Atzori 062abfd669 fixed NPE, removed unused stuff 2022-12-06 12:04:00 +01:00
dimitrispie 2a52a42169 Added 4 institutions: 
-University of Modena and Reggio Emilia
-Bilkent University
-Saints Cyril and Methodius University of Skopje
-University of Milan
 2022-12-06 10:10:21 +02:00
Claudio Atzori 8248da40d9 Merge branch 'beta' into graph_cleaning 2022-12-02 14:49:00 +01:00
Claudio Atzori ddf065756f Merge pull request 'Two organizations are added for monitor' (#258) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #258
 2022-12-02 14:45:27 +01:00
Sandro La Bruzzo 5a48a2fb18 implemented synch for single mdstore 2022-12-01 11:34:43 +01:00
Claudio Atzori a38116546d Merge branch 'beta' into deduptesting 2022-11-30 11:27:29 +01:00
Miriam Baglioni ce020f2c83 [EOSC FUTURE] added resources and test for review 2022-11-30 09:57:30 +01:00
Miriam Baglioni bb0ddc1c44 [BulkTag] adding verb starts_with 2022-11-30 09:56:24 +01:00
Claudio Atzori 8e3edba318 [graph cleaning] testing the collectedfron and hostedby patch procedure 2022-11-29 16:07:09 +01:00
Claudio Atzori 58c05731f9 [graph cleaning] WIP: testing the collectedfron and hostedby patch procedure 2022-11-29 11:21:51 +01:00
Miriam Baglioni 9c70c5dbd6 [Bulk Tag horizontal] added new path in definition of constraint (to recognize fos subjects) - changed test and resource class to test this new aspect 2022-11-28 14:51:20 +01:00
Miriam Baglioni 0628df7a3a resolving conflicts 2022-11-28 10:44:56 +01:00
Claudio Atzori 11695ba649 [graph cleaning] patch also the result's collectedfrom and hostedby datasource name according to the datasource master-duplicate mapping 2022-11-28 10:18:43 +01:00
Claudio Atzori 6082d235d3 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into graph_cleaning 2022-11-28 09:54:48 +01:00
Claudio Atzori 24ef301cc1 [graph cleaning] patch the result's collectedfrom and hostedby identifiers according to the datasource master-duplicate mapping 2022-11-28 09:54:18 +01:00
Alessia Bardi 90c8f9cb61 tests for EOSC Future 2022-11-23 12:18:44 +01:00
Miriam Baglioni 0e3edc5018 [Bulk Tag] fixed issue in verb name 2022-11-23 11:26:36 +01:00
Claudio Atzori a79c47522d updated ORCID datasource identifier 2022-11-23 10:17:49 +01:00
Alessia Bardi 2832117f23 added eoscifguidelines in test 2022-11-22 18:01:12 +01:00
Alessia Bardi 3c08269a4d Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-11-22 17:31:00 +01:00
Alessia Bardi 2687fc9f73 tests for EOSC Future review - ROhub 2022-11-22 17:30:56 +01:00
Claudio Atzori 1d5143b0b6 Merge branch 'beta' into deduptesting 2022-11-22 10:21:30 +01:00
Claudio Atzori 0aa725083f extended dedup testing 2022-11-17 16:13:43 +01:00
Claudio Atzori 3dbc637d3e code formatting 2022-11-17 09:55:41 +01:00
Claudio Atzori ddff0e8999 merging duplicates using IdentifierComparator 2022-11-11 16:10:25 +01:00
Claudio Atzori 5af5a8ae42 added IdentifierComparator 2022-11-09 14:20:59 +01:00
Claudio Atzori 7c3390ac10 Merge branch 'beta' into eoscifguidelines-from-mdstores 2022-11-07 12:18:40 +01:00
dimitrispie 992fc5b628 Added McMaster University Institution 2022-11-03 11:02:18 +02:00
dimitrispie 7fda05e380 Added Autonomous University of Barcelona 2022-11-01 13:59:40 +02:00
Claudio Atzori 22873c9172 Merge pull request 'Added fields: totalcost, fundedamount, currency, in project table' (#257) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #257
 2022-10-31 13:49:27 +01:00
dimitrispie 7861c472e0 Hive memory parameters 2022-10-28 19:00:32 +03:00
dimitrispie 5df9c63963 Added fields: totalcost, fundedamount, currency, in project table 2022-10-27 16:44:26 +03:00
Sandro La Bruzzo 2b9a20a4a3 Changed the way Scholexplorer filter the relationships, I found that filter all relation coming from openCitation is wrong, because we loose a lot of relation than intersect OpenCitation, but they don't come only from there 2022-10-24 12:53:47 +02:00
Alessia Bardi 208ed32315 fixed xpath for semantic relation 2022-10-23 18:18:13 +02:00
Alessia Bardi ee759ac92d file format after mvn compile 2022-10-23 18:09:47 +02:00
Alessia Bardi 31a10f000b Map the field oaf:eoscifguidelines from mdstores. Currently we can find it in ROHub metadata 2022-10-23 18:05:37 +02:00
Claudio Atzori ec39b84898 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-10-19 15:21:02 +02:00
Claudio Atzori bca4a61710 suppressing hyper verbose spark logs during unit test execution 2022-10-19 15:20:58 +02:00
Sandro La Bruzzo 72f0d88d6c formatted code 2022-10-19 14:18:42 +02:00
Claudio Atzori 9b449110c6 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-10-14 15:48:04 +02:00
Claudio Atzori ae7cd0735a [graph2hive] more partitions 2022-10-14 15:47:58 +02:00
Sandro La Bruzzo 135cf81151 Merge remote-tracking branch 'origin/beta' into beta 2022-10-13 11:47:25 +02:00
Sandro La Bruzzo a1f94530a3 added documentation 2022-10-13 11:47:11 +02:00
Claudio Atzori b47aaf4dd1 [cleaning] subjects declared as belonging to specific vocabularies whose values are not found in the vocab are set to type keyword 2022-10-13 11:23:43 +02:00
Claudio Atzori 6163ecbf63 [cleaning] renamed parameters in wf action 2022-10-11 11:20:03 +02:00
Claudio Atzori b301e9fdff [cleaning] renamed action name/description 2022-10-11 11:08:52 +02:00
Claudio Atzori ece40adc09 [cleaning] fixing NPE in the country cleaning phase 2022-10-11 10:10:20 +02:00
Claudio Atzori d51275a965 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-10-07 09:52:49 +02:00
Claudio Atzori 8d97949316 [cleaning] fixed loop in wf nodes 2022-10-07 09:52:45 +02:00
Miriam Baglioni a653e1b3ea [Enrichment - result to community through organization] reimplementation of the data preparation step using spark 2022-10-04 15:01:28 +02:00
Miriam Baglioni 4d8339614b Revert "[BipFinder] Fixed issue for wrong escaped char in doi" 
This reverts commit 188f25eefa.
 2022-10-04 14:29:47 +02:00
Miriam Baglioni 7324853a17 Revert "[BipFinder] refactoring" 
This reverts commit 28dc317350.
 2022-10-04 14:29:39 +02:00
Miriam Baglioni 28dc317350 [BipFinder] refactoring 2022-10-04 09:47:27 +02:00
Miriam Baglioni 188f25eefa [BipFinder] Fixed issue for wrong escaped char in doi 2022-10-03 12:42:52 +02:00
Claudio Atzori 89f7007080 Merge pull request '[stats wf] misc changes' (#254) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #254
 2022-10-03 10:32:05 +02:00
dimitrispie 2c0c3f1806 Cast amount to float for table result_apcs 2022-09-28 19:33:24 +03:00
Alessia Bardi 49360770d7 map w3id as instance url 2022-09-28 14:16:39 +02:00
dimitrispie bdc46e3eaa Remove denormalization of results to fix downloads numbers in monitor 2022-09-28 14:59:08 +03:00
dimitrispie 2ebb1459a9 Fixed type in no_downloads 2022-09-28 14:36:57 +03:00
Miriam Baglioni b5b5a4c192 [CleanCountry] fixed issue 2022-09-28 12:42:51 +02:00
Miriam Baglioni f1d7d45cf7 [BulkTag] fixed issue 2022-09-28 12:01:43 +02:00
Miriam Baglioni 3ec044600d [BulkTag] fixed conflicts 2022-09-28 11:58:28 +02:00
Miriam Baglioni 1cb79719a7 [BulkTag] fixed issues 2022-09-28 11:44:55 +02:00
Claudio Atzori f3f7604e6c trying to fix a test that fails only on Jenkins 2022-09-27 15:21:37 +02:00
Claudio Atzori 3f90d159e3 code formatting 2022-09-27 15:08:00 +02:00
Claudio Atzori 0b3e44e521 Merge branch 'beta' into relation-from-odf 2022-09-27 14:57:01 +02:00
Claudio Atzori 57dbeb08d2 code formatting 2022-09-27 14:55:10 +02:00
Claudio Atzori b60985cf68 Merge branch 'beta' into horizontalConstraints 2022-09-27 14:39:31 +02:00
Claudio Atzori 3b60642ef9 Merge pull request 'Synchronize indicators in stats-db with monitor-db' (#249) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #249
 2022-09-27 14:37:33 +02:00
Claudio Atzori 25e9d92aad Merge branch 'beta' into clean_country 2022-09-27 14:27:49 +02:00
Alessia Bardi fd63e9bfac Mapping all relationships supported in ModelConstants and ModelSupport 2022-09-26 11:24:13 +02:00
Miriam Baglioni ca216a92ad [BulkTagging] changed the query to the IS to insert values for FOS and SDG as subject in the configuration used for the tagging 2022-09-23 17:06:07 +02:00
Miriam Baglioni 3e6b0f58bb [BulkTagging] changed the query to the IS to get also the information for the advancedConstraint from the profile 2022-09-23 16:47:19 +02:00
Miriam Baglioni 4a3e119b73 mergin with branch beta 2022-09-23 16:16:06 +02:00
Miriam Baglioni f0e303abf9 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-09-23 16:15:32 +02:00
Miriam Baglioni 55da4d8715 [BulkTagging] modifying code to represent constraints horizontally on all the results. Added subject to the set of field used to express the constraint. Modified resorces to test the new approach. Modified test calss 2022-09-23 16:02:19 +02:00
Alessia Bardi c5eb722170 relationships from relatedIdentifier whose target id type is one of the pid type with an authority 2022-09-23 15:47:05 +02:00
Claudio Atzori c86cc53520 suppressing hyper verbose spark logs during unit test execution 2022-09-23 15:20:40 +02:00
Alessia Bardi ba33ff71fd refactoring for the generation of relationships from related identifier of type 'OPENAIRE' 2022-09-23 15:17:13 +02:00
Alessia Bardi 982bcc1e35 test wrid pid and record identifier 2022-09-23 12:06:06 +02:00
Miriam Baglioni 960cb861a0 refactoring 2022-09-23 11:14:04 +02:00
Claudio Atzori c42850328e fixed semantic (subreltype) for ServiceOrganization relations 2022-09-22 16:23:25 +02:00
Miriam Baglioni 33bb79459e Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-09-22 15:55:17 +02:00
dimitrispie dcd85f8cd7 - Synchronize indicators in stats-db with monitor-db 
- added new openorg id for Nanyang Technological University
- changed openorg id for University of Helsinki #8088 ticket
 2022-09-22 13:33:07 +03:00
Claudio Atzori e45ec15221 Merge branch 'beta' into clean_country 2022-09-19 11:34:02 +02:00
Claudio Atzori 26e1badded added instance.url syntactical validation, avoid creating multiple duplicated URLs 2022-09-19 11:19:10 +02:00
Miriam Baglioni 5240ac3d7b [EOSC Tag] remove addition of eosc context for result with eosc if guidelines set 2022-09-19 11:02:18 +02:00
Claudio Atzori 192215a18e merged from branch discard-non-wellformed 2022-09-19 10:17:10 +02:00
Claudio Atzori e370e940d8 [aggregator graph] save invalid records aside for further inspection 2022-09-16 14:06:28 +02:00
Claudio Atzori 465e941214 Merge pull request '[stats wf] Changes to indicators tables' (#244) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #244
 2022-09-16 10:13:58 +02:00
Claudio Atzori 1e42d984e1 [aggregator graph] save invalid records aside for further inspection 2022-09-15 10:49:42 +02:00
Alessia Bardi 9e7ec4198f fixed test 2022-09-14 18:08:56 +02:00
Claudio Atzori c48f6e9c57 [aggregator graph] save invalid records aside for further inspection 2022-09-14 17:11:26 +02:00
dimitrispie 3bf3127251 Changes to monitor and indicator scripts 2022-09-14 16:36:19 +03:00
Claudio Atzori a0919ed495 [aggregator graph] save invalid records aside for further inspection 2022-09-14 13:27:39 +02:00
Alessia Bardi b99a011345 return empty Oaf list if record cannot be parsed 2022-09-13 11:51:55 +02:00
Alessia Bardi 27af5122d2 logs for non well formed XML files 2022-09-12 14:25:23 +02:00
Claudio Atzori ff6f789b6d code formatting 2022-09-09 15:16:31 +02:00
Claudio Atzori b5d6966c01 Merge branch 'beta' into clean_country 2022-09-09 12:20:19 +02:00
Claudio Atzori b5f7bd30be Merge branch 'beta' into clean_subjects 2022-09-09 12:20:04 +02:00
Alessia Bardi f14107ad77 Merge branch 'handle_as_instance_urls' of https://code-repo.d4science.org/D-Net/dnet-hadoop into handle_as_instance_urls 2022-09-09 12:17:19 +02:00
Alessia Bardi a539c6ccaf https for handle URLs 2022-09-09 12:16:28 +02:00
dimitrispie 71b069ca90 Changes to indicator and monitor scripts 2022-09-09 13:15:58 +03:00
Claudio Atzori 1203378441 Merge branch 'beta' into clean_subjects 2022-09-09 10:38:47 +02:00
Claudio Atzori 14dc909a14 Merge branch 'beta' into clean_country 2022-09-09 10:38:17 +02:00
Claudio Atzori 853c996fa2 Merge branch 'beta' into handle_as_instance_urls 2022-09-09 09:47:16 +02:00
Claudio Atzori a431e01383 Merge pull request 'orcid_multipleworks_download' (#242) from enrico.ottonello/dnet-hadoop:orcid_multipleworks_download into beta 
Reviewed-on: #242
 2022-09-09 08:45:02 +02:00
Alessia Bardi 9ef063d502 #7861#note-8 instance url from handle 2022-09-07 17:29:54 +03:00
Alessia Bardi 5c45d52af3 testing for RiuNet 2022-09-07 15:40:57 +03:00
dimitrispie 2b5f8c9c9a comment out duplicate table creation 2022-09-06 12:27:53 +03:00
Alessia Bardi a11eb38065 testing for RO-Hub 2022-09-02 16:07:36 +02:00
Enrico Ottonello bfdf2dc390 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid_multipleworks_download 2022-08-25 12:07:54 +02:00
Enrico Ottonello da1cf561e6 alignment with beta 2022-08-25 11:57:20 +02:00
Enrico Ottonello 27445ccdaa cleaned log 2022-08-25 11:56:14 +02:00
Claudio Atzori b7c387c21f cleaning of subjects: avoid duplicated subjects, prioritise collected vs inferred or other sources 2022-08-12 15:09:16 +02:00
Claudio Atzori adb526b0e1 Merge branch 'beta' into clean_subjects 2022-08-12 10:51:17 +02:00
Claudio Atzori cb7c07c54e [scholix] added step to create tar archive 2022-08-11 11:25:24 +02:00
Claudio Atzori 2aa16d0432 [scholix] fixed OpenCitation dump procedure 2022-08-10 17:39:29 +02:00
Miriam Baglioni 7dbdd4a0fe [Clean Country]changes related to #241 (comment) 2022-08-10 15:13:10 +02:00
Claudio Atzori 51ad93e545 [scholix] fixed OpenCitation dump procedure 2022-08-10 11:57:56 +02:00
Miriam Baglioni 62d2138806 [Clean Context] changed a bit the logic. Added the check not to have result hosted by a datasource of type institutional repository from NL. Added also the check that the country should have been included in the result via propagation for it to be removed 2022-08-08 14:10:47 +02:00
Claudio Atzori 3418ce50ac cleaning of subjects: perform the cleaning when the given value is equivalent to one of the terms in the vocabulary 2022-08-08 12:48:47 +02:00
Claudio Atzori a78028dabc Merge branch 'beta' into clean_subjects 2022-08-08 12:34:33 +02:00
Miriam Baglioni 390013a4b2 mergin with branch beta 2022-08-08 12:30:31 +02:00
Claudio Atzori 3937ff04de Merge branch 'beta' into tagEosc 2022-08-08 09:57:23 +02:00
Claudio Atzori a4815f6bec Merge branch 'beta' into clean_subjects 2022-08-05 16:57:03 +02:00
Claudio Atzori 29c4cde42e Merge branch 'clean_subjects' of https://code-repo.d4science.org/D-Net/dnet-hadoop into clean_subjects 2022-08-05 16:56:37 +02:00
Claudio Atzori 4eaa063b1f cleaning of subjects 2022-08-05 16:56:09 +02:00
Claudio Atzori 84598c7535 Merge pull request 'restored some collab indicators' (#240) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #240
 2022-08-05 15:50:39 +02:00
Antonis Lempesis fcef5294e2 restored some collab indicators 2022-08-05 13:45:01 +03:00
Claudio Atzori 844f6eb465 Merge branch 'beta' into clean_subjects 2022-08-05 12:39:05 +02:00
Claudio Atzori 32cee1f619 WIP: cleaning of subjects 2022-08-05 12:32:08 +02:00
Claudio Atzori c1f2ffc53d Merge pull request 'commenting out the collab indicators because they still fail' (#237) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #237
 2022-08-05 11:57:36 +02:00
Antonis Lempesis 227e10f4b3 commenting out the collab indicators because they still fail 2022-08-05 12:54:36 +03:00
Claudio Atzori 6c0fd9284b merge from beta 2022-08-05 10:42:53 +02:00
Claudio Atzori b78889a0ce WIP: cleaning of subjects 2022-08-05 09:11:37 +02:00
Miriam Baglioni a7a18d7630 [Graph Dump] removed code for the dump from the project. Fixed issues in tests when possible 2022-08-04 17:40:40 +02:00
Claudio Atzori 499826ead1 serialising field eoscifguidelines field in the Solr XML records 2022-08-04 12:40:48 +02:00
Claudio Atzori 27a91841e7 WIP: cleaning of subjects 2022-08-04 11:39:39 +02:00
Antonis Lempesis b09d7ddc74 fixed the datasourceOrganization relations 2022-08-03 12:26:50 +02:00
Claudio Atzori e62018e95d [aggregator graph] added more assertions in test 2022-08-03 12:26:05 +02:00
Claudio Atzori efd96e7e66 Merge pull request 'fixed the datasourceOrganization relations' (#233) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #233
 2022-08-03 12:25:05 +02:00
Antonis Lempesis 8b0407d8ec fixed the datasourceOrganization relations 2022-08-03 12:26:59 +03:00
Claudio Atzori eb53b52f7c code formatting 2022-08-02 13:24:47 +02:00
Claudio Atzori 27681cf6bf Merge pull request '[stats wf] latest version of indicators + added FOS classification' (#232) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #232
 2022-08-02 12:57:15 +02:00
Antonis Lempesis 1778d40c40 latest version of indicators 2022-08-02 13:39:34 +03:00
Claudio Atzori 209c7e9dab [datacite] avoid UnsupportedOperationException 2022-08-01 09:05:35 +02:00
Enrico Ottonello 64311b8be4 removed unuseful accumulator 2022-07-31 01:03:29 +02:00
Antonis Lempesis 6fc9ef53f6 addded command line params to allow hive actions to run 2022-07-29 16:36:20 +03:00
Antonis Lempesis 9886fe87ec - Added FOS classification 
- Added extra orgs in monitor
- Fixed result-project and organization-project tables
 2022-07-29 16:34:50 +03:00
Claudio Atzori 92e48f12f7 [metadata collection] updated collector plugin name 2022-07-29 13:54:00 +02:00
Claudio Atzori f62c4e05cd code formatting 2022-07-29 11:56:01 +02:00
Claudio Atzori 0727f0ef48 [EOSC tag] avoid NPEs 2022-07-29 11:55:34 +02:00
Miriam Baglioni 3329b6ce6b [EOSC TAG] added fix for NPE on subjects 2022-07-29 10:54:20 +02:00
Claudio Atzori 1dd1e4fe3a extended test for mapping project_organization relations 2022-07-28 11:27:08 +02:00
Claudio Atzori 60e4fbd78b Merge branch 'beta' into project_organization_contribution 2022-07-28 10:15:43 +02:00
Claudio Atzori ed98a6d9d0 [Datacite mapping] include the older datacite prefixed OpenAIRE id among the originalId[] 2022-07-28 10:15:14 +02:00
Claudio Atzori 09ccc7b472 Merge branch 'beta' into project_organization_contribution 2022-07-28 09:49:59 +02:00
Sandro La Bruzzo 67525076ec fixed test, now it compiles after commit a6977197b3 2022-07-26 15:35:17 +02:00
Claudio Atzori 26104826c4 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-07-26 14:34:29 +02:00
Claudio Atzori d43663d30f adapted RorActionSet test, it should not create parent/child rels 2022-07-25 17:54:10 +02:00
Miriam Baglioni 35bcd9422d [EOSC Context Tagging] removed not needed specification in path 2022-07-25 15:45:22 +02:00
Miriam Baglioni 1c82acb168 [EOSC Context Tagging] refactoring: moved EOSC IF tagging in package eosc under bulkTag 2022-07-25 14:26:39 +02:00
Miriam Baglioni 68cb637832 merge with branch beta 2022-07-25 14:24:25 +02:00
Miriam Baglioni 0172bab251 [EOSC Context Tagging] refactoring 2022-07-25 14:16:45 +02:00
Claudio Atzori 612b7a5530 Merge branch 'beta' into tagEosc 2022-07-25 14:12:59 +02:00
Claudio Atzori c3ede1b379 Merge branch 'beta' into pubmed_update 2022-07-25 14:10:22 +02:00
Miriam Baglioni 144c103b67 [EOSC Context Tagging] add check to avoid the insertion of the context if already present 2022-07-25 13:52:45 +02:00
Enrico Ottonello 657b0208a2 multiple works download (<=100) for single request 2022-07-25 12:37:39 +02:00
Miriam Baglioni d091866e48 [EOSC Context Tagging] refactoring 2022-07-25 11:12:22 +02:00
Miriam Baglioni 5968ec018d [Clean Country] modified workflow and added param file 2022-07-22 16:48:38 +02:00
Miriam Baglioni a12d28c644 [Clean Country] added logic not to remove country from result if it exist a hosting datasource with that country. Moreover the country will be removed only if added with propagation 2022-07-22 16:23:12 +02:00
Miriam Baglioni 2c933f1158 mergin with branch beta 2022-07-22 14:57:41 +02:00
Miriam Baglioni 06a95daf60 [EOSC context TAG] refactoring after compilation 2022-07-22 14:57:06 +02:00
Miriam Baglioni ffb0ce3fb9 mergin with branch beta 2022-07-22 14:55:55 +02:00
Miriam Baglioni 627332526b [EOSC context TAG] workflow start from reset_outputpath action 2022-07-22 14:55:11 +02:00
Miriam Baglioni 7a1c1b6f53 [EOSC context TAG] Add test class and resourcesK 2022-07-22 14:36:02 +02:00
Sandro La Bruzzo ddc414b258 fixed wrong json param 2022-07-22 09:43:15 +02:00
Miriam Baglioni 317a4a56ef [EOSC context TAG] first implementation of the logic to tag results imported from datasources registered in the EOSC 2022-07-21 17:37:48 +02:00
Miriam Baglioni 3be036f290 [EOSC TAG] refactoring after compilation 2022-07-21 14:45:43 +02:00
Miriam Baglioni e61b8e6b03 mergin with branch beta 2022-07-21 14:43:23 +02:00
Miriam Baglioni 56d09e6348 [EOSC TAG] before adding the tag added a step to verify the same tag is not already present 2022-07-21 14:36:48 +02:00
Miriam Baglioni 5143a80232 [EOSC TAG] modification of test class to align with new element 2022-07-21 11:56:51 +02:00
Sandro La Bruzzo 5f651f2316 changed filter relation on SubRelType 2022-07-21 10:11:48 +02:00
Miriam Baglioni 438abdf96f [EOSC TAG] adding eosc interoperability guidelines in the specific element in the result. Removed from subjects. Removed also the deletion of EOSC Jupyter Notebook from subject since now the criteria are searchd for in a different place 2022-07-20 18:07:54 +02:00
Miriam Baglioni 65cc736e2f [Clean Country] first implementation to remove country NL from results collected from NARCIS when doi starts with mendely prefix 2022-07-20 17:05:56 +02:00
Sandro La Bruzzo 5b76321d9c implemented oozie workflow to generate scholix dump filtering relclass semantic 2022-07-20 16:34:32 +02:00
Claudio Atzori 1138b2ac8e code formatting 2022-07-19 14:15:49 +02:00
Sandro La Bruzzo 00168303db Added unit test to verify the generation in the OriginalID the old openaire Identifier generated by OAI 2022-07-14 10:19:59 +02:00
Sandro La Bruzzo 0a4f4d98fa added PMCId to PmArticle 2022-07-13 15:27:17 +02:00
Claudio Atzori 0c1cfee396 mapping oaf:fulltext elements in the result.fulltext field 2022-07-11 17:34:59 +02:00
Miriam Baglioni fae681fea1 [Country Propagation] add check to avoid NPE on datasource.getDatasourceType().getClassis() 2022-07-03 17:39:58 +02:00
Miriam Baglioni c09fcdb40b Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-07-01 12:38:03 +02:00
Claudio Atzori 0cb1c70788 code formatting 2022-07-01 10:44:08 +02:00
Claudio Atzori 4ec13e2b66 Merge branch 'master' into dump_new_funded_products 2022-07-01 10:30:28 +02:00
Claudio Atzori 072f192853 include the class information in the measure XML serialization 2022-07-01 09:54:56 +02:00
Claudio Atzori a88103bcf9 [action manager] added more testing 2022-07-01 09:06:59 +02:00
Claudio Atzori 7da24c1dec added more logging 2022-06-28 13:47:49 +02:00
Miriam Baglioni ee1f1eeca2 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-06-28 11:06:32 +02:00
Miriam Baglioni 71744a1f52 [DUMP DELTA PROJECTS] refactoring 2022-06-27 18:07:58 +02:00
Miriam Baglioni 1d1fe3b151 [DUMP DELTA PROJECTS] refactoring 2022-06-27 18:04:59 +02:00
Claudio Atzori a8773af0cb Merge branch 'beta' into project_organization_contribution 2022-06-27 09:37:40 +02:00
Claudio Atzori 4829b96bb5 Merge branch 'beta' into author_name_particles 2022-06-27 09:37:03 +02:00
Claudio Atzori 5130eac247 mapping by participant project contribution 2022-06-24 17:16:42 +02:00
Claudio Atzori 929b145130 code formatting 2022-06-21 23:07:06 +02:00
Miriam Baglioni edddfc6c63 [DUMP DELTA PROJECTS] adding test and resource 2022-06-21 18:28:53 +02:00
Miriam Baglioni f561f13dd9 [Funder Products Dump] fixed names of parameters in workflow 2022-06-21 18:18:17 +02:00
Miriam Baglioni ff74e73369 [DUMP NEW FUNDED PRODUCTS] change in resources 2022-06-21 18:02:51 +02:00
Miriam Baglioni b98f904d48 [Funder Products Dump] new way to avoid using hive 2022-06-21 17:52:27 +02:00
Miriam Baglioni 7423577a08 [Graph DUMP] add code to produce the delta of new projects with respect to the previous delta/dump 2022-06-21 14:51:38 +02:00
Claudio Atzori b295a40d9c restored use of name_particles when parsing author names 2022-06-16 12:20:43 +02:00
Claudio Atzori c7b09c6225 Merge branch 'beta' into 7096-fileGZip-collector-plugin 2022-06-16 09:28:50 +02:00
Claudio Atzori e03c0c7794 Merge branch 'beta' into oaf_relation_mapping 2022-06-16 09:27:01 +02:00
Claudio Atzori 06b5533d4c Merge branch 'beta' into 7096-fileGZip-collector-plugin 2022-06-16 09:22:16 +02:00
Claudio Atzori 4c8e820ff0 mapping relationship from trasformed records based on oaf:relation 2022-06-14 08:49:02 +02:00
Alessia Bardi 88d531dc91 exclude FAIRsharing records from Datacite 2022-06-13 16:17:17 +02:00
Claudio Atzori 116902c028 mapping relationship from trasformed records based on oaf:relation 2022-06-13 14:31:48 +02:00
Claudio Atzori b8cda65487 code formatting 2022-06-13 09:20:03 +02:00
Michele Artini 634869ce95 deleted hierarchical rels from ror action set 2022-06-13 09:12:21 +02:00
Alessia Bardi 922c6d66ef Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-06-10 17:29:15 +02:00
Alessia Bardi 68bd58d6a4 tests for ROHub 2022-06-10 17:29:11 +02:00
Miriam Baglioni b229c6e7af Merge pull request 'beta' (#218) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #218
 2022-06-10 11:03:48 +02:00
Antonis Lempesis ab18c9daa9 Merge branch 'beta' of https://code-repo.d4science.org/antonis.lempesis/dnet-hadoop into beta 2022-06-09 15:48:21 +03:00
Antonis Lempesis 574492c659 removed double result_apc table creation from monitor 2022-06-09 15:48:13 +03:00
Michele Artini b94a791bc5 unit tests to transform cnr explora 2022-06-09 12:25:34 +02:00
Miriam Baglioni 4b6913787b [DOI-BOOST] added one method in test of crossref mapping to aof and one resource. Related to ticket 7807 2022-06-08 14:55:19 +02:00
Antonis Lempesis db088cc69c fixed *_organization tables 2022-06-07 04:04:28 +03:00
Miriam Baglioni 31d4557e8d Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2022-06-06 11:52:29 +02:00
Claudio Atzori 5c2949a864 Merge pull request '[stats wf] added open citations & more orgs in monitor, removed collab indicator' (#213) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #213
 2022-05-20 11:38:43 +02:00
Miriam Baglioni 5e0b8f9b5f [CountryPropagation] refactoring 2022-05-20 09:15:53 +02:00
Miriam Baglioni c298c148cb [CountryPropagation] fix NPE issue 2022-05-20 09:11:46 +02:00
Miriam Baglioni eaf9385ae5 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-05-17 15:09:37 +02:00
Miriam Baglioni f5207885e3 [EOSCTag] changed code to remove EOSC Jupyter Notebook and modified test to exclude galaxy + software from the tagging for Galaxy 2022-05-17 15:09:22 +02:00
Claudio Atzori d098ad0d93 [hb patch] updated map 2022-05-16 15:54:04 +02:00
Claudio Atzori 1dda11e031 [hb patch] updated map 2022-05-16 15:53:27 +02:00
Claudio Atzori 8dd5517548 code formatting 2022-05-16 14:35:24 +02:00
Claudio Atzori 52cb086506 [graph grouping] drop relation target path before copying from source 2022-05-16 12:08:36 +02:00
Claudio Atzori 6442763f97 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-05-16 12:07:45 +02:00
Claudio Atzori 997c50078e [graph grouping] drop relation target path before copying from source 2022-05-16 12:07:40 +02:00
Sandro La Bruzzo c1971d52c4 Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2022-05-16 10:30:35 +02:00
Sandro La Bruzzo 4c50f35c8b update publication Date format 2022-05-16 10:29:36 +02:00
Michele Artini 46c07e0724 deleted hierarchical rels from ror action set 2022-05-16 09:39:54 +02:00
Claudio Atzori 6031acb2e3 [openorgs] fixed parent/child query, using the correct semantic labels 2022-05-16 09:20:48 +02:00
Claudio Atzori 0dc33ea391 [openorgs] fixed parent/child query, using the correct semantic labels 2022-05-16 09:20:30 +02:00
Antonis Lempesis 3fc9efeab6 fixed typo, addded open citations and apcs in monitor 2022-05-13 14:28:13 +03:00
Miriam Baglioni e4eac1d20b [EOSC TAG] added code to remove EOSC Jupyter Notebook from subjects and put EOSC as classid in the qualifier 2022-05-13 11:01:33 +02:00
Sandro La Bruzzo 22f65680b9 Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2022-05-11 15:30:12 +02:00
Sandro La Bruzzo ca8d26bcb4 added better filter for openCitations 2022-05-11 15:29:57 +02:00
Claudio Atzori 5d3b4a9c25 [graph merge beta] merge datasource originalid, collectedfrom, and pid lists 2022-05-11 14:13:06 +02:00
Antonis Lempesis 23334479bb removed yet another collab, added more orgs in monitor 2022-05-11 13:05:52 +03:00
Claudio Atzori 2a8e0fb72f [openorgs] mapping parent/child relations without massaging the semantic labels 2022-05-10 08:45:53 +02:00
Claudio Atzori 77bc9863e9 [openorgs] mapping parent/child relations without massaging the semantic labels 2022-05-09 16:06:04 +02:00
Claudio Atzori 378020e30a [eosc_services] unit test adaptation 2022-05-09 16:05:06 +02:00
Miriam Baglioni 89657a0b78 [UsageCount] refactoring 2022-05-09 14:43:27 +02:00
Miriam Baglioni a056f59c6e [UsageCount] make it as an action set as it should be, plus changed the test to make them work as well now 2022-05-09 12:51:35 +02:00
Antonis Lempesis 61b4c19e65 restored indi_result_org_country_collab, removed indi_result_org_collab 2022-05-06 12:52:10 +03:00
Antonis Lempesis cfbbcaf7c4 commented out indi_result_org_country_collab 2022-05-06 12:49:36 +03:00
Claudio Atzori 658450d9a3 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-05-05 11:38:08 +02:00
Claudio Atzori 846975c886 [eosc_services] using the correct 'keyword' subject type, as declared in the dnet:subject_classification_typologies vocabulary 2022-05-05 11:37:58 +02:00
Miriam Baglioni 8a72de4011 [EOSCTag] modified workflow to execute all the steps and not only the last one 2022-05-04 10:10:56 +02:00
Miriam Baglioni bd1108f98b mergin with branch beta 2022-05-04 10:06:56 +02:00
Miriam Baglioni 3aeedd931a [EOSCTag] fixed issue in case description is null. Modified test resources and classes 2022-05-04 10:06:38 +02:00
Claudio Atzori da611cfbbd [eosc_services] resolved merge conflicts 2022-05-03 13:37:15 +02:00
Claudio Atzori 9e12cb3c92 EOSC Services - removed field knowledgegraph; depending on the released schema module 2022-05-03 11:55:45 +02:00
Miriam Baglioni a21fe310e5 [EOSCTag] last test and change in the implementation to search in title and descriptio 2022-05-02 17:43:20 +02:00
Claudio Atzori 2ade69dea6 EOSC Services - minor 2022-05-02 17:03:31 +02:00
Claudio Atzori b6a7ff3a99 EOSC Services - removed fields from mapping, testing preparation 2022-05-02 15:52:33 +02:00
Miriam Baglioni e37177e1ce mergin with branch beta 2022-05-02 12:31:50 +02:00
Claudio Atzori a8c51f6f16 EOSC Services - fixed query and testing preparation 2022-05-02 11:09:03 +02:00
Claudio Atzori 05c1ea92e9 EOSC Services - added Service-specific fields in the XML record serialization 2022-04-29 15:56:55 +02:00
Claudio Atzori f5f532d134 EOSC Services - ongoing update 2022-04-29 12:25:24 +02:00
Antonis Lempesis 0353f93d54 added new hive opts 2022-04-29 12:49:27 +03:00
Serafeim Chatzopoulos 623f7be26d Fix reading files from HDFS in FileCollector & FileGZipCollector plugins 2022-04-28 16:31:11 +03:00
Claudio Atzori 5ffc24d1ba EOSC Services - ongoing update 2022-04-26 16:18:41 +02:00
Sandro La Bruzzo 78015a5733 Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2022-04-26 09:56:34 +02:00
Sandro La Bruzzo 8c22e5c30a added fix to include date array with only year or year and month 2022-04-26 09:56:27 +02:00
Claudio Atzori 81c4496d32 Merge branch 'beta' into 7096-fileGZip-collector-plugin 2022-04-26 09:02:15 +02:00
Miriam Baglioni e342ec93f0 [EOSCTag] prepared resources for test 2022-04-22 18:35:37 +02:00
Miriam Baglioni 88562c0930 [EOSC TAG] added test for galaxy for title and description criterias 2022-04-22 18:35:03 +02:00
Miriam Baglioni dfbd2bcbea [EOSC TAG] added logic in case subject is null 2022-04-22 18:34:03 +02:00
Miriam Baglioni 27c85e901a [EOSCTag] added resources and finalized test for Jupyter Notebook tagging 2022-04-22 17:38:10 +02:00
Miriam Baglioni 87bff36d9e mergin with branch beta 2022-04-22 15:52:34 +02:00
Miriam Baglioni 911ce0780a Merge branch 'cleancontext' of https://code-repo.d4science.org/D-Net/dnet-hadoop into cleancontext 2022-04-22 15:41:42 +02:00
Miriam Baglioni 19d90658fc [Clean Context] added description to parameters 2022-04-22 15:41:23 +02:00
Claudio Atzori 54162f5c4f Merge branch 'beta' into cleancontext 2022-04-22 11:49:33 +02:00
Miriam Baglioni bbb77052d3 [EOSCTag] first test 2022-04-22 11:32:57 +02:00
Claudio Atzori 30105f0722 Merge branch 'beta' into 7096-fileGZip-collector-plugin 2022-04-22 11:22:21 +02:00
Sandro La Bruzzo a82ec3aaaf code formatter 2022-04-22 11:08:13 +02:00
Sandro La Bruzzo aa12429f50 Modified last intersection since we lost many titles. 2022-04-22 11:05:08 +02:00
Miriam Baglioni 7cb7066472 [EoscTag] first "rough" implementation 2022-04-22 10:44:17 +02:00
Sandro La Bruzzo d660895b30 fixed wrong mapping type of dataset 2022-04-21 20:41:13 +02:00
Miriam Baglioni e0915061c2 [Clean Context] fixed issue in param name 2022-04-21 16:32:40 +02:00
Miriam Baglioni 6dc68c48e0 [EOSCTag] - 2022-04-21 16:19:04 +02:00
Miriam Baglioni 9a961a0092 [Clean Context] fixed issue in param name 2022-04-21 15:12:24 +02:00
Claudio Atzori 29150a5d0c code formatting 2022-04-21 13:31:56 +02:00
Miriam Baglioni 5b7d9e741c [Clean Context] added logic to cleaning workflow to accomodate also context cleaning 2022-04-21 13:02:14 +02:00
Miriam Baglioni ccba1a3db1 [Clean Context] added logic to cleaning workflow to accomodate also context cleaning 2022-04-21 13:00:06 +02:00
Miriam Baglioni 20de75ca64 [Measures] removed typo 2022-04-21 12:14:03 +02:00
Miriam Baglioni bebb2a0560 Merge branch 'eosc_dimitris' of https://code-repo.d4science.org/D-Net/dnet-hadoop into eosc_dimitris 2022-04-21 12:10:19 +02:00
Miriam Baglioni b61efd613b [Measures] addressed comments in the PR 2022-04-21 12:09:37 +02:00
Miriam Baglioni d012d125d7 [EOSCTag] - 2022-04-21 12:02:09 +02:00
Claudio Atzori 88acad76f9 Merge branch 'beta' into eosc_dimitris 2022-04-21 12:00:03 +02:00
Claudio Atzori eabb40fccc Merge branch 'beta' into 7096-fileGZip-collector-plugin 2022-04-21 11:42:43 +02:00
Miriam Baglioni c304657d91 [Measures] put the logic in common, no need to change the schema 2022-04-21 11:27:26 +02:00
Sandro La Bruzzo d580e15442 Modified last intersection since we lost many titles. 
this is my last resource, after that, I've to  change my job
 2022-04-21 11:06:08 +02:00
Miriam Baglioni 5295effc96 [Measures] fixed issue 2022-04-20 16:20:40 +02:00
Miriam Baglioni a38f0f5ea7 mergin with branch beta 2022-04-20 15:44:18 +02:00
Miriam Baglioni dbfbe8841a [Clean Context] changed the description in input parameters 2022-04-20 15:41:03 +02:00
Miriam Baglioni 5feae77937 [Measures] last changes to accomodate tests 2022-04-20 15:13:09 +02:00
Miriam Baglioni 869407c6e2 [Measures] added new measure (usagecounts) as action set. Measure added at the level of the result. Ref #7587 2022-04-20 14:02:05 +02:00
Antonis Lempesis b7cd2c6ca1 added open citations 2022-04-20 14:46:55 +03:00
Michele Artini c96a8613f8 update SQL queries 2022-04-20 12:07:49 +02:00
Michele Artini 4314db55c8 migration to services: update sql queries 2022-04-19 15:05:02 +02:00
Miriam Baglioni 0012e57bf9 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2022-04-14 14:14:44 +02:00
Miriam Baglioni c5a863132c [BulkTagging] revert it 2022-04-14 14:14:13 +02:00
Sandro La Bruzzo d5b29d96a7 fix merging in crossrefAggregator which creates dataInfo null 2022-04-14 11:07:04 +02:00
Miriam Baglioni 8e8933d41a [BulkTagging] added fix if result.dataInfo is null 2022-04-14 09:04:24 +02:00
Claudio Atzori b93a141d6c [Doiboost] fixed fundingReference extraction from the Crossref records 2022-04-12 10:26:05 +02:00
Claudio Atzori 73c172926a [Doiboost] fixed fundingReference extraction from the Crossref records 2022-04-12 10:25:42 +02:00
Claudio Atzori 48b580b45c [graph enrichment] fixed country_propagation oozie workflow definition, parameter saveGraph is not needed anymore by the SparkCountryPropagationJob 2022-04-11 08:52:36 +02:00
Claudio Atzori 21f32b83c6 [graph enrichment] fixed country_propagation oozie workflow definition, parameter saveGraph is not needed anymore by the SparkCountryPropagationJob 2022-04-11 08:52:12 +02:00
Claudio Atzori 4eff7856f5 Merge pull request '[stats-wf] computing stats in each step' (#210) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #210
 2022-04-08 14:21:01 +02:00
Serafeim Chatzopoulos d0b84d3297 Add FileCollectorPlugin and respective test 2022-04-07 15:06:38 +03:00
Serafeim Chatzopoulos bc1bf55507 Add AbstractSplittedRecordPlugin 2022-04-07 14:33:04 +03:00
Claudio Atzori c26222623f [maven-release-plugin] prepare for next development iteration 2022-04-07 13:32:22 +02:00
Claudio Atzori 86585a6b27 [maven-release-plugin] prepare release dhp-1.2.4 2022-04-07 13:32:19 +02:00
Claudio Atzori ad85d88eaf [maven-release-plugin] rollback the release of dhp-1.2.4 2022-04-07 13:28:35 +02:00
Claudio Atzori 598e11dfd7 [maven-release-plugin] prepare for next development iteration 2022-04-07 13:27:02 +02:00
Claudio Atzori db3d9877a5 [maven-release-plugin] prepare release dhp-1.2.4 2022-04-07 13:26:58 +02:00
Claudio Atzori 3bba6d6e38 [maven-release-plugin] rollback the release of dhp-1.2.4 2022-04-07 12:23:17 +02:00
Claudio Atzori 2ac2d928bd [maven-release-plugin] prepare for next development iteration 2022-04-07 12:18:47 +02:00
Claudio Atzori 85bc722ff4 [maven-release-plugin] prepare release dhp-1.2.4 2022-04-07 12:18:43 +02:00
Claudio Atzori bc05b6168a [maven-release-plugin] rollback the release of dhp-1.2.4 2022-04-07 11:49:06 +02:00
Claudio Atzori 505420fd61 [maven-release-plugin] prepare for next development iteration 2022-04-07 11:34:06 +02:00
Claudio Atzori 66e718981e [maven-release-plugin] prepare release dhp-1.2.4 2022-04-07 11:34:02 +02:00
Serafeim Chatzopoulos e612489670 Add fileGZip collector plugin and respective test 2022-04-06 19:12:44 +03:00
Claudio Atzori 4190c9f6bc [graph raw] avoid NPEs importing datasource consent fields 2022-04-06 15:34:31 +02:00
Claudio Atzori 05fafa1408 [graph raw] avoid NPEs importing datasource consent fields 2022-04-06 15:23:50 +02:00
Antonis Lempesis c442c91f89 computing stats in each step 2022-04-06 12:40:02 +03:00
Claudio Atzori 8c457f1b2c conflicts resolved, merged from beta 2022-04-06 10:27:52 +02:00
Miriam Baglioni e77d104951 [OC] added / to workflow path 2022-04-05 15:07:11 +02:00
Miriam Baglioni 79336d46c5 [Clean Context] first naive implementation of a functionality to clean not wanted contextes from one result. This implementation simply verifies the main title of the results start with a given string 2022-04-04 15:52:31 +02:00
Claudio Atzori 873369af1c Merge pull request '[stats wf] added apcs in monitor db' (#207) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #207
 2022-03-29 15:40:20 +02:00
Antonis Lempesis 7112806a73 views cannot be stored as parquet... 2022-03-29 16:37:29 +03:00
Antonis Lempesis fff0b3cc19 added apcs in monitor db 2022-03-29 14:15:31 +03:00
Claudio Atzori de85367695 Merge pull request '[stats wf] fix: views cannot be stored as parquet...' (#206) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #206
 2022-03-29 12:51:02 +02:00
Antonis Lempesis ee24f3eb2c views cannot be stored as parquet... 2022-03-29 13:47:48 +03:00
Sandro La Bruzzo 1b11010169 minor fix 2022-03-29 10:59:14 +02:00
Claudio Atzori 0a0ae84c22 [graph raw] DOI based instance URLs on https 2022-03-29 10:52:58 +02:00
Claudio Atzori 9fa3dd78fe Merge pull request '[stats wf] various fixes, organization ids for inst. dashboard' (#205) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #205
 2022-03-28 22:03:49 +02:00
Claudio Atzori 96aa2a5d0d Merge branch 'beta' into instance_group_by_url 2022-03-28 09:23:52 +02:00
Claudio Atzori 741bc99c47 Merge branch 'beta' into datasource_pdf_consent 2022-03-28 09:20:48 +02:00
Claudio Atzori 61319b2e83 updated dhp-schema version; set entity-level dataInfo before & after merging the fields from the group of duplicates 2022-03-25 16:38:33 +01:00
Antonis Lempesis d8503cd191 added moooar organizations 2022-03-24 14:02:36 +02:00
Miriam Baglioni 7b8f85692e [Enrichment country] fixed issues with parameters and workflow args 2022-03-23 17:20:23 +01:00
Claudio Atzori 48d32466e4 instances grouped by URL expose only one refereed 2022-03-23 14:52:03 +01:00
Claudio Atzori f10066547b increased spark.sql.shuffle.partitions in affiliation_from_semrel_propagation 2022-03-23 12:22:26 +01:00
Claudio Atzori 43733c1a18 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-03-23 12:14:27 +01:00
Antonis Lempesis 62f91b0869 cleanup 2022-03-22 16:17:49 +02:00
Antonis Lempesis 2e8394ecf8 creating aaall tables as parquet 2022-03-22 16:16:08 +02:00
Antonis Lempesis dcfbeb8142 yet more typos 2022-03-21 12:36:03 +02:00
Miriam Baglioni 89fd275480 [HostedByMap] added left over from PR and fixed issue on workflow 2022-03-21 09:54:45 +01:00
miconis c763aded70 dependency updated to the new pace-core version 2022-03-16 16:41:50 +01:00
miconis c959639bd5 dependency updated to the new pace-core version 2022-03-15 16:33:03 +01:00
Miriam Baglioni 0f7d8ca2e0 [HostedByMap] change on master to align to PR 201 on beta merged as 9f3036c847 2022-03-11 15:16:02 +01:00
Claudio Atzori f430029596 cleanup 2022-03-11 14:28:28 +01:00
Miriam Baglioni 12de9acb0d [Country Propagation] left out from previous commit 2022-03-11 14:17:02 +01:00
Miriam Baglioni 2fbb35ade5 mergin with branch beta 2022-03-11 13:58:10 +01:00
Miriam Baglioni 4437f9345d [Country Propagation] left out from previous commit 2022-03-11 13:57:47 +01:00
Miriam Baglioni 2b643059fa [Country Propagation] changed the logic to get the collectedfrom at the result level. To fix issue when no instance is created for a result that should have the country associated. Change the code to use spark instead of hive to prepare the data needed for the propagation step. Added new tests for the intermediate steps and new verification for the propagation itself 2022-03-11 13:56:48 +01:00
Claudio Atzori f25407bbe2 added mapping for datasource consent fields to integrate them in the graph 2022-03-11 09:32:42 +01:00
Miriam Baglioni 2c5087d55a [HostedByMap] download of doaj from json, modification of test resources, deletion of class no more needed for the CSV download 2022-03-04 15:18:21 +01:00
Miriam Baglioni 5d608d6291 [HostedByMap] changed the model to include also oaStart date and review process that could be possibly used in the future 2022-03-04 11:06:09 +01:00
Miriam Baglioni b7c2340952 [HostedByMap - DOIBoost] changed to use code moved to common since used also from hostedbymap now 2022-03-04 11:05:23 +01:00
Miriam Baglioni 8a41f63348 [HostedByMap] update to download the json instead of the csv 2022-03-04 10:38:43 +01:00
Miriam Baglioni 44b0c03080 [HostedByMap] update to download the json instead of the csv 2022-03-04 10:37:59 +01:00
Antonis Lempesis ad78e505da yet another fix 2022-03-03 12:28:12 +02:00
Miriam Baglioni 3be8737c32 [graph-stats] fixed query after the change in the indicator table related to PR#200 2022-03-02 14:09:05 +01:00
Miriam Baglioni 3970651ee1 Merge pull request 'fixed query after the change in the indicator table' (#200) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #200
 2022-03-02 14:05:58 +01:00
Antonis Lempesis efeeebfee1 fixed query after the change in the indicator table 2022-03-02 13:29:25 +02:00
Claudio Atzori 580d904aae manually merging PR#199 #199 2022-02-25 12:22:50 +01:00
Claudio Atzori 1932a65d1c Merge pull request '[Stats wf] sprint 6 indicators' (#198) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #198
 2022-02-25 12:09:18 +01:00
Miriam Baglioni f5b0a6f89c [master to beta] fixed issues in test files 2022-02-25 10:21:57 +01:00
miconis 8991d097b4 bug fix in the DedupRecordFactory, DataInfo set before merge 2022-02-24 17:13:12 +01:00
miconis fe1c966cbf Merge branch 'master_202203' of code-repo.d4science.org:D-Net/dnet-hadoop into master_202203 2022-02-24 17:08:38 +01:00
miconis b0f369dc78 bug fix in the DedupRecordFactory, DataInfo set before merge 2022-02-24 17:08:24 +01:00
Miriam Baglioni 859cb7ac9d [DoiBoost AR] changed test resource to be sure the result will always have EMBARGO as value for AccessRight 2022-02-24 16:55:32 +01:00
Miriam Baglioni a40b59b7d5 [ResultToOrgFromInstRepoTest] fixed issue in model of the input resources 2022-02-24 16:05:57 +01:00
Claudio Atzori 66c09b1bc7 code formatting 2022-02-24 12:58:07 +01:00
Claudio Atzori a87c070447 conflicts resolved, merged from beta 2022-02-24 12:51:31 +01:00
Claudio Atzori 86cdb7a38f [provision] serialize measures defined on the result level 2022-02-23 15:54:18 +01:00
Alessia Bardi 9d6203f79b test mapping datasource 2022-02-23 15:00:53 +01:00
Antonis Lempesis 3b92a2ab9c added the rest of spring 6 in monitor db 2022-02-23 12:05:57 +02:00
Antonis Lempesis 87c91f70a2 added sprint 6 indicators to monitor db 2022-02-22 14:41:48 +02:00
Claudio Atzori 5226d0a100 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-02-18 15:21:07 +01:00
Claudio Atzori 99f5b14469 [graph raw] invisible records stored among the raw graph rather than the claimed subgraph 2022-02-18 15:20:57 +01:00
Claudio Atzori 401dd38074 code formatting 2022-02-18 15:19:15 +01:00
Claudio Atzori cf8443780e added processingchargeamount to the result view 2022-02-18 15:17:48 +01:00
Sandro La Bruzzo 891781ee3f Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2022-02-18 11:11:32 +01:00
Sandro La Bruzzo d3f03abd51 fixed wrong json path 2022-02-18 11:11:17 +01:00
Claudio Atzori 89c7313fc5 Merge branch 'beta' into hierarchical_orgs_relations 2022-02-17 10:30:04 +01:00
dimitrispie 58c59f46eb Added Sprint 6 2022-02-17 10:21:09 +02:00
Antonis Lempesis 5772f92dba merged beta chnages in hive branch 2022-02-15 13:24:51 +02:00
Antonis Lempesis 393a4ee956 fixed yet another typo... 2022-02-15 12:56:50 +02:00
Sandro La Bruzzo 3aa2020b24 added script to regenerate hostedBy Map following instruction defined on ticket #7539 
updated hosted By Map
 2022-02-15 11:05:27 +01:00
Miriam Baglioni be64055cfe [OpenCitation] changed the name of destination folders 2022-02-14 15:49:44 +01:00
Miriam Baglioni 1490867cc7 [OpenCitation] cleaning of the COCI model 2022-02-14 14:52:12 +01:00
Miriam Baglioni c191080965 mergin with branch beta 2022-02-14 14:49:39 +01:00
Alessia Bardi 600ede1798 serialisation of APCs int he XML records 2022-02-11 11:00:20 +01:00
Miriam Baglioni 5c4043dba8 [OpenCitation] refactoring 2022-02-08 16:23:05 +01:00
Miriam Baglioni 759ed519f2 [OpenCitation] added logic to avoid the genration of self citations relations 2022-02-08 16:15:34 +01:00
Miriam Baglioni b071f8e415 [OpenCitation] change to extract in json format each folder just onece 2022-02-08 15:37:28 +01:00
Miriam Baglioni fbc28ee8c3 [OpenCitation] change the integration logic to consider dois with commas inside 2022-02-07 18:32:08 +01:00
Miriam Baglioni 78be2975f0 [stats-wf]fixed another typo related to PR#193 2022-02-07 11:22:08 +01:00
Miriam Baglioni 1f8302dc37 Merge pull request '[stats-wf]fixed yet another typo' (#193) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #193
 2022-02-07 11:19:26 +01:00
Antonis Lempesis 5f762cbd09 fixed yet another typo 2022-02-07 12:09:12 +02:00
Alessia Bardi ac8b8f224f Merge branch 'beta' into extendResult 2022-02-04 16:43:27 +01:00
Miriam Baglioni 493caef358 [stats-wf]fixed the result_result table related to PR#191 2022-02-04 14:51:25 +01:00
Miriam Baglioni 0547fd6ee7 Merge pull request '[stats-wf]fixed the result_result table' (#191) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #191
 2022-02-04 14:47:31 +01:00
Antonis Lempesis ae633c566b fixed the result_result table 2022-02-04 15:04:19 +02:00
Miriam Baglioni aae667e6b6 [APC at the result level] added the APC at the level of the result and modified test class 2022-02-04 12:34:25 +01:00
Sandro La Bruzzo bcfdf9a0d7 iis repository with https 2022-02-03 16:49:31 +01:00
Miriam Baglioni 3c60e53a96 [stats-wf]fixed the result_result creation for monitor PR#190 on beta 2022-02-03 14:47:08 +01:00
Miriam Baglioni 89922156c9 Merge pull request '[stats-wf]fixed the result_result creation for monitor' (#190) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #190
 2022-02-03 13:00:56 +01:00
Antonis Lempesis c2b44530a3 typo... 2022-02-03 13:44:07 +02:00
Antonis Lempesis dbd2646d59 fixed the result_result creation for monitor 2022-02-03 12:37:10 +02:00
Alessia Bardi 2e215abfa8 test for instances with URLs for OpenAPC 2022-02-02 17:27:44 +01:00
Miriam Baglioni 37784209c9 [dhp-schemas-] updated the version of dhp-schema to 2.10.27 for APC name and id modification 2022-02-02 12:46:31 +01:00
Miriam Baglioni 73eba34d42 [UnresolvedEntities] Changed the way to merge the unresolved because the new merge removed the dataInfo from the merged result. Added also data info for subjects 2022-02-01 08:38:41 +01:00
Miriam Baglioni dce7f5fea8 [BULK TAGGING] changed to fix issue that should have been fixed already 2022-01-31 08:20:28 +01:00
Claudio Atzori 8eb75ca169 adapted GenerateEntitiesApplicationTest behaviour 2022-01-27 16:24:37 +01:00
Claudio Atzori af61e44acc ported changes to the GraphCleaningFunctionsTest from 8de9788308 2022-01-27 16:19:14 +01:00
Claudio Atzori 1322379741 Merge branch 'beta' into delegated_authorities 2022-01-25 14:28:25 +01:00
Claudio Atzori 59a250337c [graph resolution] drop output path at the beginning 2022-01-24 18:02:39 +01:00
Claudio Atzori 97ad94d7d9 [graph resolution] drop output path at the beginning 2022-01-24 18:02:07 +01:00
Claudio Atzori 8de9788308 applied fix for avoiding ruling out the invisible (APC) records during the graph cleaning 2022-01-24 11:29:22 +01:00
Claudio Atzori 2f385b3ac6 updated dnet workflow profile definitions 2022-01-21 13:59:46 +01:00
Claudio Atzori dd52bf1bb8 copy relations to the graphOutputPath 2022-01-21 13:59:29 +01:00
Claudio Atzori 4983d6536d Merge branch 'beta' into delegated_authorities 2022-01-21 13:02:48 +01:00
Claudio Atzori f0ea2410e5 improved mapping titles from datacite records to consider title types 2022-01-21 10:50:34 +01:00
Claudio Atzori b37bc277c4 reintroduced the hostedby patching to the datacite records 2022-01-21 09:15:13 +01:00
Claudio Atzori f2fde5566b using helper method from ModelSupport to find the inverse relation descriptor 2022-01-20 09:19:07 +01:00
Claudio Atzori 3b9020c1b7 added unit test for the DispatchEntitiesJob 2022-01-19 18:15:55 +01:00
Claudio Atzori abfa9c6045 code formatting 2022-01-19 17:17:11 +01:00
Claudio Atzori 391aa1373b added unit test 2022-01-19 17:13:21 +01:00
Claudio Atzori 44a937f4ed factored out entity grouping implementation, extended to consider results from delegated authorities rather than identical records from other sources 2022-01-19 12:24:52 +01:00
Miriam Baglioni a7c4d0d16d [DoiBoost Organizations] added parameter to specify the action in the wf raw_organizations to be able to load the openorgs organization as in the loading step for the construction of the graph 2022-01-13 13:52:00 +01:00
Miriam Baglioni a75fb8c47a [BipFinderInstanceLevel] change pom to align to the dhp-schema release 2.10.24 and refactoring 2022-01-12 18:06:26 +01:00
Miriam Baglioni e7d5a39c03 [BipFinderInstanceLevel] added tests in test class 2022-01-12 17:25:04 +01:00
Miriam Baglioni 4993666d73 [BipFinderInstanceLevel] changed creation of the instance to allow to enrich existing instances with same pid 2022-01-12 16:53:47 +01:00
Claudio Atzori 9acc32faa6 [stats wf] final touches for the integration of PRs #166, #179 in the master branch 2022-01-12 12:04:31 +01:00
dimitrispie b053b0178e Sprint 5 and other changes 2022-01-12 11:23:37 +01:00
Antonis Lempesis b6b4bc0df9 added first indicator of sprint 5 2022-01-12 11:20:28 +01:00
Antonis Lempesis e91f06f39b fixed typos in indicators. Added extra views in monitor 2022-01-12 11:18:28 +01:00
Antonis Lempesis 3ce1976627 fixed column names 2022-01-12 11:14:41 +01:00
Antonis Lempesis 4878d7485c added usage stats 2022-01-12 11:13:25 +01:00