D-Net
/
dnet-hadoop
14
5
Fork 11
Code Issues 14 Pull Requests 13 Projects 2 Releases 2 Wiki Activity
5,452 Commits 103 Branches 20 Tags 658 MiB
Commit Graph

5452 Commits

Author SHA1 Message Date
Antonis Lempesis 0456f1b788 Merge remote-tracking branch 'origin/beta' into beta 2024-06-14 15:11:30 +03:00
Antonis Lempesis 38636942c7 filtering out deletedbyinference and invinsible results from accessroute 2024-06-14 15:11:19 +03:00
Lampros Smyrnaios d942a1101b Miscellaneous updates to the copying operation to Impala Cluster: 
- Show some counts and the elapsed time for various sub-tasks.
- Code polishing.
 2024-06-14 12:14:38 +03:00
Giambattista Bloisi 9bf2bda1c6 Fix: next returned a null value at end of stream 2024-06-12 13:28:51 +02:00
Giambattista Bloisi d90cb099b8 Fix for paginationStart parameter management 2024-06-11 20:23:44 +02:00
Giambattista Bloisi 4f2a61e10f Change the selection criteria for the pivot record of a group so that by best pid type becomes the first criteria. This will have the effect to slowly converge to records having DOI pid 2024-06-11 15:33:56 +02:00
Claudio Atzori 11fe3a4fe0 [graph resolution] use sparkExecutorMemory to define also the memoryOverhead 2024-06-11 14:21:17 +02:00
Claudio Atzori a8d68c9d29 avoid NPEs 2024-06-11 14:19:24 +02:00
Miriam Baglioni 8fe934810f Merge remote-tracking branch 'origin/beta' into beta 2024-06-11 10:28:51 +02:00
Miriam Baglioni 9da006e98c [SDGFoSActionSet]remove datainfo for the result. It is not needed (qualifier.classid = UPDATE) useless since subject do not go at the level of the instance 2024-06-11 10:28:32 +02:00
Giambattista Bloisi 85c1eae7e0 Fixes for pagination strategy looping at end of download 2024-06-10 19:03:58 +02:00
Claudio Atzori b0eba210c0 [actionset promotion] use sparkExecutorMemory to define also the memoryOverhead 2024-06-10 16:15:24 +02:00
Claudio Atzori 3776327a8c hostedby patching to work with the updated Crossref contents, resolved conflict 2024-06-10 15:24:12 +02:00
Claudio Atzori 0139f23d66 Merge pull request 'organization type from OpenOrgs' (#445) from import_openorg_type into beta 
Reviewed-on: #445
 2024-06-07 12:17:31 +02:00
Michele Artini c726572418 changed some parameters in OSF test 2024-06-07 12:03:26 +02:00
Claudio Atzori ec79405cc9 [graph raw] set organization type from openorgs 2024-06-07 11:30:31 +02:00
Miriam Baglioni 1477406ecc [bulkTag] fixed issue that made project disappear in graph_10_enriched 2024-06-06 10:45:41 +02:00
Claudio Atzori 92c3abd5a4 [graph cleaning] use sparkExecutorMemory to define also the memoryOverhead 2024-06-06 10:44:33 +02:00
Claudio Atzori ce2364743a applying changes from PR#442: Fix for missing collectedfrom after dedup 2024-06-06 10:43:43 +02:00
Claudio Atzori f70dc76b61 minor 2024-06-06 10:43:10 +02:00
Claudio Atzori 73bd1938a5 [graph2hive] use sparkExecutorMemory to define also the memoryOverhead 2024-06-05 12:17:35 +02:00
Claudio Atzori da5c1e73a4 Merge pull request 'Irish oaipmh exporter' (#443) from irish-oaipmh-exporter into beta 
Reviewed-on: #443
 2024-06-05 10:55:09 +02:00
Claudio Atzori 81090ad593 [IE OAIPHM] added oozie workflow, minor changes, code formatting 2024-06-05 10:03:33 +02:00
Claudio Atzori a02f3f0d2b code formatting 2024-05-30 10:21:18 +02:00
Alessia Bardi eadfd8d71d Merge pull request 'Updated XMLIterator for splitting on different nodes' (#436) from dblp_collection_plugin into beta 
Reviewed-on: #436
 2024-05-29 16:05:06 +02:00
Alessia Bardi 05ee783c07 Merge branch 'beta' into dblp_collection_plugin 2024-05-29 16:04:39 +02:00
Alessia Bardi fe9fb59c90 Merge pull request 'Rest collector plugin on hadoop supports a new param to pass request headers' (#441) from rest-collector-request-header-map into beta 
Reviewed-on: #441
 2024-05-29 15:54:39 +02:00
Claudio Atzori c272c4ad68 code formatting 2024-05-29 15:50:07 +02:00
Alessia Bardi c5f4da16a4 Merge branch 'beta' into rest-collector-request-header-map 2024-05-29 15:46:23 +02:00
Alessia 1b165a14a0 Rest collector plugin on hadoop supports a new param to pass request headers 2024-05-29 15:41:36 +02:00
Michele Artini e996787be2 OSF test 2024-05-29 15:05:17 +02:00
Claudio Atzori 62716141c5 Merge pull request 'Miscellaneous updates to the copying operation to Impala Cluster' (#440) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #440
 2024-05-29 14:34:51 +02:00
Miriam Baglioni 5d85b70e1f [NOAMI] removed Ireland funder id 501100011103. ticket 9635 2024-05-29 11:55:00 +02:00
Lampros Smyrnaios a644a6f4fe Catch Spark-sql errors and show a log with the statement that failed. 2024-05-29 12:10:11 +03:00
Lampros Smyrnaios e3f28338c1 Miscellaneous updates to the copying operation to Impala Cluster: 
- Assign the WRITE and EXECUTE permissions to the DBs' HDFS-directories, in order to be able to create tables on top of them, in the Impala Cluster.
- Make sure the "copydb" function returns early, when it encounters a fatal error, while respecting the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" config.
 2024-05-28 17:51:45 +03:00
Giambattista Bloisi 73316d8c83 Add jaxb and jaxws dependencies when compiling with spark-34 profile as they are required to run with jdk > 8 2024-05-28 14:14:51 +02:00
Miriam Baglioni 75d5ddb999 Update to include a blackList that filters out the results we know are wrongly associated to IE - update workflow definition - the blacklist parameter 2024-05-27 12:01:28 +02:00
Miriam Baglioni 87c9c61b41 Update to include a blackList that filters out the results we know are wrongly associated to IE - refactoring 2024-05-27 12:01:16 +02:00
Miriam Baglioni b55fed09f8 Update to include a blackList that filters out the results we know are wrongly associated to IE 2024-05-27 12:01:01 +02:00
Claudio Atzori 107d958b89 [org dedup] avoid NPEs in SparkPrepareNewOrgs 2024-05-27 11:59:54 +02:00
Claudio Atzori 3a7a6ecc32 [org dedup] avoid NPEs in SparkPrepareOrgRels 2024-05-27 11:59:45 +02:00
Claudio Atzori 1af4224d3d [org dedup] avoid NPEs in SparkPrepareOrgRels 2024-05-27 11:59:33 +02:00
Claudio Atzori 0d5bdb2db0 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2024-05-27 11:59:02 +02:00
Claudio Atzori 66548e6a83 Merge pull request 'changes in copy script' (#438) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #438
 2024-05-27 11:54:03 +02:00
Lampros Smyrnaios 888637773c Add missing "/*EOS*/" comments. 2024-05-27 12:34:49 +03:00
Lampros Smyrnaios e0ac494859 Merge branch 'beta' into convert_hive_to_spark_actions 
# Conflicts:
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15_5.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_1-definitions.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_5.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql
 2024-05-27 12:27:40 +03:00
Antonis Lempesis 15b54a345a added fos lvl4 2024-05-24 13:21:28 +03:00
Lampros Smyrnaios b48ed6e617 Change configuration in the copy-operation to Impala Cluster: 
Set the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" parameter to "false".
 2024-05-23 16:58:12 +03:00
Lampros Smyrnaios 68322843e2 Small updates to the copy-operation to Impala Cluster: 
- Add a configuration-"switch" to control whether the script exits upon an error or not.
- Allow the script to exit when a table could not be created.
- Show the elapsed time for processing each database.
 2024-05-23 15:07:49 +03:00
Lampros Smyrnaios c7b32bbacc Update CopyDataToImpalaCluster: 
Update the code of acquiring the entities from Ocean cluster, through hive, in order to optimize the process and account for additional reserved keywords in Impala.

Co-authored-by: Antonis Lempesis <antleb@di.uoa.gr>
 2024-05-23 13:00:19 +03:00