 Claudio Atzori
|
8eaa1fd4b4
|
WIP: metadata collection in INCREMENTAL mode and relative test
|
2021-02-01 19:29:10 +01:00 |
 Sandro La Bruzzo
|
bead34d11a
|
code refactor
|
2021-02-01 14:58:06 +01:00 |
|
Sandro La Bruzzo
|
6ff234d81b
|
Implemented a first prototype of incremental harvesting and trasformation using readlock
|
2021-02-01 13:56:05 +01:00 |
|
Sandro La Bruzzo
|
b6b835ef49
|
update transformation Factory to get Transformation Rule by Id and not by Title
|
2021-02-01 08:49:42 +01:00 |
|
Sandro La Bruzzo
|
e423634cb6
|
RollBack in case of error WORKS!!!
|
2021-01-29 17:21:42 +01:00 |
|
Sandro La Bruzzo
|
8ee82576c6
|
Collection on Refresh WORKS!!!
|
2021-01-29 17:02:46 +01:00 |
|
Sandro La Bruzzo
|
0276180039
|
WIP mdstore
transaction implemented on hadoop side
|
2021-01-29 16:42:41 +01:00 |
|
Sandro La Bruzzo
|
0f8e2ecce6
|
Merged Datacite transfrom into this branch
|
2021-01-29 10:45:07 +01:00 |
|
Sandro La Bruzzo
|
99cf3a8ea4
|
Merged Datacite transfrom into this branch
|
2021-01-28 16:34:46 +01:00 |
|
Sandro La Bruzzo
|
98b9498b57
|
Removed old messaging system not quite used from collection and Transformation workflow
code refactor
|
2021-01-28 09:51:17 +01:00 |
|
Sandro La Bruzzo
|
184e7b3856
|
Implemented new Transformation using spark
|
2021-01-27 15:43:08 +01:00 |
|
Sandro La Bruzzo
|
ffb092b8d3
|
removed duplicate code HttpConnector.java
|
2021-01-25 15:05:37 +01:00 |
|
Claudio Atzori
|
41500669e2
|
[BIP! Scores integration] merged missing classes from bipFinder branch
|
2021-01-11 14:39:47 +01:00 |
|
Claudio Atzori
|
2a7a10809e
|
[BIP! Scores integration] merged missing classes from bipFinder branch
|
2021-01-11 10:05:02 +01:00 |
|
Claudio Atzori
|
d6686dd7cf
|
merged from master
|
2021-01-08 18:16:12 +01:00 |
|
Claudio Atzori
|
34229970e6
|
[BIP! Scores integration] Create updates as Result rather than subclasses; Result considers also metrics in the mergeFrom operation
|
2021-01-08 16:29:17 +01:00 |
|
Claudio Atzori
|
1361c9eb0c
|
[BIP! Scores integration] Create updates as Result rather than subclasses; Result considers also metrics in the mergeFrom operation
|
2021-01-07 10:07:30 +01:00 |
|
Claudio Atzori
|
2e503ee101
|
code formatting
|
2020-12-17 13:47:38 +01:00 |
|
Claudio Atzori
|
03319d3bd9
|
Revert "Merge pull request 'Creation of the action set to include the bipFinder! score' (#62) from miriam.baglioni/dnet-hadoop:bipFinder into master"
This reverts commit add7e1693b, reversing
changes made to f9a8fd8bbd.
|
2020-12-17 12:23:58 +01:00 |
 Miriam Baglioni
|
888175baf7
|
added java doc
|
2020-12-01 18:36:29 +01:00 |
|
Miriam Baglioni
|
3d62d99d5d
|
fixed issue in workflow variable
|
2020-12-01 15:02:49 +01:00 |
|
Miriam Baglioni
|
17680296b9
|
removed unnecessary variable and unused method
|
2020-12-01 15:02:31 +01:00 |
|
Miriam Baglioni
|
5b3ed70808
|
refactoring
|
2020-12-01 14:31:34 +01:00 |
|
Miriam Baglioni
|
62ff4999e3
|
added workflow and last step of collection and save
|
2020-12-01 14:30:56 +01:00 |
|
Miriam Baglioni
|
45d06c45c7
|
collecting all the atoic actions for result type and save them all in the AS path
|
2020-12-01 14:29:18 +01:00 |
|
Miriam Baglioni
|
db36e11912
|
classes test classes and resources for production of the actionset to include bipFinder score in results
|
2020-11-30 20:14:23 +01:00 |
|
Miriam Baglioni
|
a2ce527fae
|
changed to match the requirements for short titles in level and long titles in classification
|
2020-10-20 17:03:25 +02:00 |
|
Claudio Atzori
|
5f7b75f5c5
|
code formatting
|
2020-10-07 13:22:54 +02:00 |
|
Miriam Baglioni
|
061527f06e
|
adding short description
|
2020-10-05 13:54:39 +02:00 |
|
Miriam Baglioni
|
0c12d7bdd8
|
adding short description
|
2020-10-05 11:39:55 +02:00 |
|
Miriam Baglioni
|
fc2f7636be
|
removed not used code
|
2020-10-02 12:33:52 +02:00 |
|
Miriam Baglioni
|
4aec347351
|
refactoring
|
2020-10-01 16:23:52 +02:00 |
|
Miriam Baglioni
|
61946b4092
|
refactoring
|
2020-10-01 16:22:48 +02:00 |
|
Miriam Baglioni
|
43cbd62c2b
|
added classpath.first in the configuration
|
2020-10-01 15:46:34 +02:00 |
|
Miriam Baglioni
|
cd69c6b023
|
added dependency for the topic file path
|
2020-10-01 15:45:59 +02:00 |
|
Miriam Baglioni
|
3a374c34b6
|
fixed null pointer exception
|
2020-10-01 15:41:01 +02:00 |
|
Miriam Baglioni
|
6e5db85b32
|
-
|
2020-10-01 11:51:11 +02:00 |
|
Miriam Baglioni
|
b90bee124b
|
removing raws that are empy from thos imported
|
2020-10-01 11:16:49 +02:00 |
|
Miriam Baglioni
|
416bda6066
|
changed the programme.desxcription by using the same value used in the classification instead of the short title or the title
|
2020-10-01 10:31:33 +02:00 |
|
Miriam Baglioni
|
f6587c91f3
|
added comparison to a char that seems - but it is not
|
2020-10-01 10:30:26 +02:00 |
|
Miriam Baglioni
|
7e73bb88b3
|
changed the logic to add the topic description to the project
|
2020-09-28 17:21:43 +02:00 |
|
Miriam Baglioni
|
0a035e3630
|
-
|
2020-09-28 17:20:49 +02:00 |
|
Miriam Baglioni
|
16bee2084d
|
added the topic code to the project subset
|
2020-09-28 17:20:11 +02:00 |
|
Miriam Baglioni
|
0bf2d0db52
|
added to the workflow the download of the topic excel file and one property needed to get the input path of the topic file in the hdfs filesystem
|
2020-09-28 12:17:22 +02:00 |
|
Miriam Baglioni
|
c2abde4d9f
|
changed the implementation of Atomic Actions creation by exploiting the topic information get from the cordis excel file
|
2020-09-28 12:16:34 +02:00 |
|
Miriam Baglioni
|
d930b8d3fc
|
changed the query to get only the code of the project and not the optional1 (topic code) and optional2 (topic description)
|
2020-09-28 12:15:48 +02:00 |
|
Miriam Baglioni
|
f8f5cfd5cc
|
removed the part added to set the topic code and description in the step of project preparation
|
2020-09-28 12:13:33 +02:00 |
|
Miriam Baglioni
|
9e19c9a221
|
remove the topic description from the values in the CSVProject class
|
2020-09-28 12:11:03 +02:00 |
|
Miriam Baglioni
|
6d8b932e40
|
refactoring
|
2020-09-28 12:06:56 +02:00 |
|
Miriam Baglioni
|
b77f166549
|
changed the package name from csvutils to utils
|
2020-09-28 12:05:47 +02:00 |
|
Miriam Baglioni
|
f4739a371a
|
code to get the information related to the topic association between code and description.
|
2020-09-28 12:02:48 +02:00 |
|
Miriam Baglioni
|
969fa8d96e
|
fixed issue and changed the transformation of the programme file to consider the new model
|
2020-09-25 13:32:34 +02:00 |
|
Miriam Baglioni
|
9f54f69e6d
|
added topic information
|
2020-09-24 15:23:35 +02:00 |
|
Miriam Baglioni
|
d6206d6e63
|
add the topic description to the action set associated to the project
|
2020-09-24 15:22:40 +02:00 |
|
Miriam Baglioni
|
6b50226f3b
|
added topic code and topic description
|
2020-09-24 15:21:49 +02:00 |
|
Miriam Baglioni
|
15af1f527e
|
modified to consider the topic information
|
2020-09-24 15:20:56 +02:00 |
|
Miriam Baglioni
|
609ff17cfc
|
now the commission give us the framework programme (FP7 - H2020) so use this information to filter out programmes not associated to H2020
|
2020-09-24 15:19:31 +02:00 |
|
Miriam Baglioni
|
b66f930466
|
Added optionl1 and optional2 information to the files red from the db. Optional1 contains the topic code and optional2 contains the topic description
|
2020-09-24 15:16:56 +02:00 |
|
Miriam Baglioni
|
860e6d38a6
|
added topic description to the CSV project variables
|
2020-09-24 15:15:26 +02:00 |
|
Miriam Baglioni
|
2cba3cb484
|
modification to the classes building the actionset to consider the h2020classification
|
2020-09-23 17:31:15 +02:00 |
|
Claudio Atzori
|
306669209f
|
code formatting
|
2020-06-16 16:54:44 +02:00 |
|
Miriam Baglioni
|
6f1eea28b6
|
changed message in log
|
2020-05-29 10:41:39 +02:00 |
|
Miriam Baglioni
|
782984d8e5
|
added needed parameter
|
2020-05-28 23:52:41 +02:00 |
|
Miriam Baglioni
|
01f7876595
|
fix issue with flatMap - the return type must not be null
|
2020-05-28 23:50:32 +02:00 |
|
Miriam Baglioni
|
773735f870
|
added the path to the file containing the projects code from the db
|
2020-05-28 17:30:45 +02:00 |
|
Miriam Baglioni
|
6a15067a64
|
added one step in the workflow
|
2020-05-28 17:30:09 +02:00 |
|
Miriam Baglioni
|
5309a99a70
|
modified the PrepareProjects to consider those in the db
|
2020-05-28 17:29:53 +02:00 |
|
Miriam Baglioni
|
b737ed8236
|
added part to read projects from the openaire db to filter out those in the csv file that are not in the db
|
2020-05-28 17:29:21 +02:00 |
|
Miriam Baglioni
|
df44db686a
|
refactoring
|
2020-05-28 10:07:00 +02:00 |
|
Miriam Baglioni
|
87b07f4af8
|
removed unused variables
|
2020-05-28 10:05:43 +02:00 |
|
Miriam Baglioni
|
1060977272
|
added fs actions to remove and the create the workingDir
|
2020-05-28 10:04:36 +02:00 |
|
Miriam Baglioni
|
96d1a3c431
|
deleted the file were to store the csv files
|
2020-05-28 10:04:10 +02:00 |
|
Miriam Baglioni
|
669c05c771
|
added groupBy before creating Actions
|
2020-05-28 10:00:45 +02:00 |
|
Miriam Baglioni
|
1855453434
|
changed the outputdir of the last step
|
2020-05-27 17:59:36 +02:00 |
|
Miriam Baglioni
|
473c6d3a23
|
produces AtomicActions instead of Projects
|
2020-05-22 15:26:57 +02:00 |
|
Miriam Baglioni
|
4589c428b1
|
generate action sets and saves them in the hdfs path for the actions sets
|
2020-05-21 16:30:39 +02:00 |
|
Miriam Baglioni
|
75491482de
|
added a new preparation step to replicate each project for the programme it is associated to
|
2020-05-20 10:28:56 +02:00 |
|
Miriam Baglioni
|
eb0e47ba53
|
parameters for h2020 programme
|
2020-05-20 10:26:44 +02:00 |
|
Miriam Baglioni
|
08218d2f3f
|
new workflow with added steps
|
2020-05-19 18:44:25 +02:00 |
|
Miriam Baglioni
|
9447d78ef3
|
added preparation classes
|
2020-05-19 18:42:50 +02:00 |
|
Miriam Baglioni
|
f0f14caf99
|
removed script files for shell actions not performed
|
2020-05-18 13:06:16 +02:00 |
|
Miriam Baglioni
|
23bbac7d7c
|
-
|
2020-05-18 13:05:03 +02:00 |
|
Miriam Baglioni
|
abc45f2708
|
added dnet-45 HttpConnector and related Classes, produced the POJO for projects and programme
|
2020-05-18 13:04:06 +02:00 |
|
Miriam Baglioni
|
5a648016ef
|
parameters from the GetFile class
|
2020-05-15 18:18:50 +02:00 |
|
Miriam Baglioni
|
83c262a483
|
workflow to download the files
|
2020-05-15 18:18:31 +02:00 |
|
Miriam Baglioni
|
22cb9e0da7
|
simple code to get file from URL
|
2020-05-15 18:18:01 +02:00 |
|
Claudio Atzori
|
0825321d0b
|
improved unit tests in dhp-aggregation
|
2020-05-05 12:39:04 +02:00 |
|
Claudio Atzori
|
439c6255a2
|
cleanup
|
2020-04-29 19:09:07 +02:00 |
|
Claudio Atzori
|
6f5b899038
|
reformatted code according to the updated style descriptor
|
2020-04-28 11:23:29 +02:00 |
|
Claudio Atzori
|
a0bdbacdae
|
switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin
|
2020-04-27 14:52:31 +02:00 |
|
Claudio Atzori
|
7a3f8085f7
|
switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin
|
2020-04-27 14:45:40 +02:00 |
|
Claudio Atzori
|
9147af7fed
|
actionsets migration workflow moved in dhp-workflows/dhp-actionmanager
|
2020-04-20 15:24:33 +02:00 |
|
Claudio Atzori
|
d714bfb4d4
|
collectedfrom field moved in common parent class Oaf.java
|
2020-04-20 12:25:19 +02:00 |
|
Claudio Atzori
|
ad7a131b18
|
introduced common project code formatting plugin, works on the commit hook, based on https://github.com/Cosium/git-code-format-maven-plugin, applied to each java class in the project
|
2020-04-18 12:42:58 +02:00 |
|
Claudio Atzori
|
6b5f9ca9cb
|
raw graph creation workflow moved under dhp-graph-mapper, claims integration is included
|
2020-04-10 17:53:07 +02:00 |
|
Claudio Atzori
|
7061d07727
|
ActionSets migration serialize the output as plain text files instead of SequenceFiles
|
2020-04-01 14:58:22 +02:00 |
 Michele Artini
|
408be3c632
|
test and fixed a problem with datacite namespaces
|
2020-03-27 11:44:50 +01:00 |
|
Michele Artini
|
fd57722c69
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-03-25 15:56:49 +01:00 |
|
Michele Artini
|
0fda2c3a30
|
some tests on db records
|
2020-03-25 09:43:58 +01:00 |
|
Michele Artini
|
e3760c7f39
|
fix a bug with organization countries
|
2020-03-24 08:43:56 +01:00 |
|
Claudio Atzori
|
ecb64e4998
|
Merge branch 'migration_wfs_regular_all_steps'
|
2020-03-23 08:57:01 +01:00 |
|
Michele Artini
|
15160032bd
|
fixed a bug setting some organization fields
|
2020-03-23 08:39:14 +01:00 |
|
Claudio Atzori
|
36236dd1c1
|
action migration workflow produces eu.dnetlib.dhp.schema.action.AtomicAction(s)
|
2020-03-19 14:00:38 +01:00 |
|
Claudio Atzori
|
abe8fb69a2
|
added global properties, moved postprocessing script inside the oozie_app directory
|
2020-03-18 15:43:54 +01:00 |
|
Claudio Atzori
|
c7e0730720
|
compress the output produced by migration steps 1 and 2
|
2020-03-18 09:34:57 +01:00 |
|
Claudio Atzori
|
2f11e37602
|
fixed expansion of path variables
|
2020-03-17 19:41:07 +01:00 |
|
Claudio Atzori
|
2795b0b096
|
no need to mkdir a the all_entities file
|
2020-03-17 17:22:14 +01:00 |
|
Claudio Atzori
|
19746ad308
|
when reuseContent, reset ${workingPath}/all_entities
|
2020-03-17 17:17:06 +01:00 |
|
Claudio Atzori
|
2f0c85eeb3
|
updated parameters for regular_all_steps worfklow, introduced flag 'reuseContent'
|
2020-03-17 17:04:58 +01:00 |
|
Claudio Atzori
|
b8290b5851
|
updated parameters for regular_all_steps worfklow
|
2020-03-17 15:45:30 +01:00 |
|
Claudio Atzori
|
4706f24ec5
|
updated parameters for regular_all_steps worfklow
|
2020-03-17 15:23:54 +01:00 |
|
Claudio Atzori
|
af835f2f98
|
when migrating actionsets from DM cluster, populate the AtomicAction.targetValue when empty (dedup similarities)
|
2020-03-15 18:07:59 +01:00 |
|
Claudio Atzori
|
9c84e21b87
|
added workflow to migrate latest version of each actionset content from DM to OCEAN cluster, mapping the targetValues from the old protobuf data model to the dhp.OAF datamodel
|
2020-03-13 15:56:52 +01:00 |
|
Michele Artini
|
b6efa9d6ab
|
Configuration of the SequenceFile Writer
|
2020-03-05 15:49:14 +01:00 |
|
Michele Artini
|
755eade2fb
|
fix creation ids
|
2020-03-04 14:49:45 +01:00 |
|
Michele Artini
|
e7167b996a
|
logs and closeable
|
2020-03-04 10:46:36 +01:00 |
|
Michele Artini
|
4b29a121b0
|
migration using spark in step2
|
2020-03-02 16:12:14 +01:00 |
|
Michele Artini
|
5445a57102
|
migration using spark in step2
|
2020-03-02 16:11:59 +01:00 |
|
Michele Artini
|
93665773ea
|
Fixed a problem with JavaRDD Union
|
2020-02-25 15:59:21 +01:00 |
|
Michele Artini
|
5d3739b5cf
|
migration of claims
|
2020-02-19 15:11:17 +01:00 |
|
Michele Artini
|
173f1df1e5
|
saved a query for openaire production database
|
2020-02-19 10:15:08 +01:00 |
|
Sandro La Bruzzo
|
9a2d74ac82
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
|
2020-02-19 10:13:45 +01:00 |
|
Sandro La Bruzzo
|
e5d7cdf422
|
fixed sql query
|
2020-02-19 10:13:36 +01:00 |
|
Claudio Atzori
|
6a288625e5
|
fixed workflow outgoing node
|
2020-02-17 15:04:33 +01:00 |
|
Sandro La Bruzzo
|
76ee85141a
|
added oozie job for DNET migration and implemented Spark job for extracting entities
|
2020-02-17 12:31:44 +01:00 |
|
Michele Artini
|
176c5606bd
|
aligned with origin/master, aligned model and mapping
|
2020-02-17 10:40:53 +01:00 |
|
Michele Artini
|
80cb52593f
|
bug fixing
|
2020-02-13 15:34:13 +01:00 |
|
Michele Artini
|
cdea0dae75
|
bug fixing
|
2020-02-12 16:34:00 +01:00 |
|
Michele Artini
|
69336195d3
|
simplifications
|
2020-02-12 11:12:38 +01:00 |
|
Michele Artini
|
06c2fd6df9
|
bug fixing
|
2020-02-11 15:29:50 +01:00 |
|
Michele Artini
|
5fc09b179c
|
bug fixing
|
2020-02-11 12:48:03 +01:00 |
|
Michele Artini
|
95740767e0
|
Ready for tests
|
2020-02-10 16:04:06 +01:00 |
|
Michele Artini
|
181e8498d4
|
...
|
2020-02-07 16:02:49 +01:00 |
|
Michele Artini
|
bb1533a07e
|
partial commit
|
2020-02-05 15:35:40 +01:00 |
|
Michele Artini
|
fbb0fc140b
|
partial implementation of migration
|
2020-02-04 15:25:47 +01:00 |
|
Michele Artini
|
6bfe2dc96e
|
partial implementation
|
2020-01-22 16:00:23 +01:00 |
|
Michele Artini
|
f6eccdde33
|
partial implementation
|
2020-01-21 14:17:05 +01:00 |
|
Michele Artini
|
cd114f1c3b
|
partial update
|
2020-01-21 12:32:10 +01:00 |
|
Michele Artini
|
b35c59eb42
|
partial implementation of entities from db
|
2020-01-20 16:04:19 +01:00 |
|
Michele Artini
|
81f82b5d34
|
partial implementation of applications to migrate entities
|
2020-01-17 15:26:21 +01:00 |
|
Claudio Atzori
|
c8bb81cd9a
|
align dependencies with IIS cluster
|
2019-10-29 18:10:20 +01:00 |
|
Sandro La Bruzzo
|
5a8a323f2a
|
dhp-collection-worker integrated in dhp-workflows
|
2019-10-24 11:36:59 +02:00 |
|
Claudio Atzori
|
c7654b6fe3
|
renamed collection & transformation oozie workflow files
|
2019-10-18 09:42:20 +02:00 |
|
Claudio Atzori
|
27db5afdad
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integrating the oozie workflow build/deploy/run mechanism, took inspiration from iis
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2019-10-17 18:38:30 +02:00 |
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Sandro La Bruzzo
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bbb87d0e3d
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implemented saxonHE on transformation spark job
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2019-10-10 11:33:51 +02:00 |
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Sandro La Bruzzo
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4b8c7c279d
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Added documentation on a class, and reused ArgumetApplicationParser on dhp-aggregation
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2019-10-07 17:02:53 +02:00 |
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Sandro La Bruzzo
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53ec9bccca
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changed the implemetation of RabitMQ Comunication
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2019-04-16 12:28:01 +02:00 |
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Sandro La Bruzzo
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403c13eebf
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Implemented message manager, Fixed bug on collection worker, implemented Collecion and Transform spark job
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2019-04-11 15:39:29 +02:00 |
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Sandro La Bruzzo
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ded6aef5e1
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moved collector worker
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2019-04-03 16:05:16 +02:00 |
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Sandro La Bruzzo
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c2ecbf5572
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moved collector worker
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2019-04-03 16:03:36 +02:00 |
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Sandro La Bruzzo
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12c65eab4c
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implemented command line
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2019-03-25 15:18:31 +01:00 |
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Sandro La Bruzzo
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e67d9ee1a9
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added first implementation of dnet-workflows
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2019-03-18 10:44:35 +01:00 |