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5482 Commits

Author SHA1 Message Date
Claudio Atzori 73bd1938a5 [graph2hive] use sparkExecutorMemory to define also the memoryOverhead 2024-06-05 12:17:35 +02:00
Claudio Atzori da5c1e73a4 Merge pull request 'Irish oaipmh exporter' (#443) from irish-oaipmh-exporter into beta 
Reviewed-on: #443
 2024-06-05 10:55:09 +02:00
Claudio Atzori 81090ad593 [IE OAIPHM] added oozie workflow, minor changes, code formatting 2024-06-05 10:03:33 +02:00
Claudio Atzori a02f3f0d2b code formatting 2024-05-30 10:21:18 +02:00
Alessia Bardi eadfd8d71d Merge pull request 'Updated XMLIterator for splitting on different nodes' (#436) from dblp_collection_plugin into beta 
Reviewed-on: #436
 2024-05-29 16:05:06 +02:00
Alessia Bardi 05ee783c07 Merge branch 'beta' into dblp_collection_plugin 2024-05-29 16:04:39 +02:00
Alessia Bardi fe9fb59c90 Merge pull request 'Rest collector plugin on hadoop supports a new param to pass request headers' (#441) from rest-collector-request-header-map into beta 
Reviewed-on: #441
 2024-05-29 15:54:39 +02:00
Claudio Atzori c272c4ad68 code formatting 2024-05-29 15:50:07 +02:00
Alessia Bardi c5f4da16a4 Merge branch 'beta' into rest-collector-request-header-map 2024-05-29 15:46:23 +02:00
Alessia 1b165a14a0 Rest collector plugin on hadoop supports a new param to pass request headers 2024-05-29 15:41:36 +02:00
Michele Artini e996787be2 OSF test 2024-05-29 15:05:17 +02:00
Claudio Atzori 62716141c5 Merge pull request 'Miscellaneous updates to the copying operation to Impala Cluster' (#440) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #440
 2024-05-29 14:34:51 +02:00
Miriam Baglioni 5d85b70e1f [NOAMI] removed Ireland funder id 501100011103. ticket 9635 2024-05-29 11:55:00 +02:00
Lampros Smyrnaios a644a6f4fe Catch Spark-sql errors and show a log with the statement that failed. 2024-05-29 12:10:11 +03:00
Lampros Smyrnaios e3f28338c1 Miscellaneous updates to the copying operation to Impala Cluster: 
- Assign the WRITE and EXECUTE permissions to the DBs' HDFS-directories, in order to be able to create tables on top of them, in the Impala Cluster.
- Make sure the "copydb" function returns early, when it encounters a fatal error, while respecting the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" config.
 2024-05-28 17:51:45 +03:00
Giambattista Bloisi 73316d8c83 Add jaxb and jaxws dependencies when compiling with spark-34 profile as they are required to run with jdk > 8 2024-05-28 14:14:51 +02:00
Miriam Baglioni 75d5ddb999 Update to include a blackList that filters out the results we know are wrongly associated to IE - update workflow definition - the blacklist parameter 2024-05-27 12:01:28 +02:00
Miriam Baglioni 87c9c61b41 Update to include a blackList that filters out the results we know are wrongly associated to IE - refactoring 2024-05-27 12:01:16 +02:00
Miriam Baglioni b55fed09f8 Update to include a blackList that filters out the results we know are wrongly associated to IE 2024-05-27 12:01:01 +02:00
Claudio Atzori 107d958b89 [org dedup] avoid NPEs in SparkPrepareNewOrgs 2024-05-27 11:59:54 +02:00
Claudio Atzori 3a7a6ecc32 [org dedup] avoid NPEs in SparkPrepareOrgRels 2024-05-27 11:59:45 +02:00
Claudio Atzori 1af4224d3d [org dedup] avoid NPEs in SparkPrepareOrgRels 2024-05-27 11:59:33 +02:00
Claudio Atzori 0d5bdb2db0 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2024-05-27 11:59:02 +02:00
Claudio Atzori 66548e6a83 Merge pull request 'changes in copy script' (#438) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #438
 2024-05-27 11:54:03 +02:00
Lampros Smyrnaios 888637773c Add missing "/*EOS*/" comments. 2024-05-27 12:34:49 +03:00
Lampros Smyrnaios e0ac494859 Merge branch 'beta' into convert_hive_to_spark_actions 
# Conflicts:
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15_5.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_1-definitions.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_5.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql
 2024-05-27 12:27:40 +03:00
Antonis Lempesis 15b54a345a added fos lvl4 2024-05-24 13:21:28 +03:00
Lampros Smyrnaios b48ed6e617 Change configuration in the copy-operation to Impala Cluster: 
Set the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" parameter to "false".
 2024-05-23 16:58:12 +03:00
Lampros Smyrnaios 68322843e2 Small updates to the copy-operation to Impala Cluster: 
- Add a configuration-"switch" to control whether the script exits upon an error or not.
- Allow the script to exit when a table could not be created.
- Show the elapsed time for processing each database.
 2024-05-23 15:07:49 +03:00
Lampros Smyrnaios c7b32bbacc Update CopyDataToImpalaCluster: 
Update the code of acquiring the entities from Ocean cluster, through hive, in order to optimize the process and account for additional reserved keywords in Impala.

Co-authored-by: Antonis Lempesis <antleb@di.uoa.gr>
 2024-05-23 13:00:19 +03:00
Giambattista Bloisi 1b2357e10a Merge pull request 'Changes in maven poms to build and test the project using Spark 3.4.x and scala 2.12' (#327) from spark34-integration into beta 
Reviewed-on: #327
 2024-05-23 09:20:28 +02:00
Sandro La Bruzzo f1fe363b19 merged again from beta (I hope for the last time) 2024-05-22 11:08:52 +02:00
Sandro La Bruzzo 66c1ffc866 merged again from beta (I hope for the last time) 2024-05-22 11:02:46 +02:00
Claudio Atzori 1ea67eba82 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2024-05-21 13:48:48 +02:00
Claudio Atzori f9fb2fef6e Merge pull request 'Modification of Microsoft Academic Graph Mapping' (#435) from mag_only_doi into beta 
Reviewed-on: #435
 2024-05-21 13:48:42 +02:00
Claudio Atzori 834461ba26 [graph provision]fixed wf definition, revised serialization of the usage counts measures 2024-05-21 13:48:06 +02:00
Sandro La Bruzzo e8a61d5dd5 removed plugin, use only FileGZip plugin 2024-05-21 13:45:29 +02:00
Sandro La Bruzzo ca9414b737 Implement multiple node name splitter on GZipCollectorPlugin and all nodes that use XMLIterator. If the splitter name contains is a comma separated values it splits for all the values 2024-05-21 09:11:13 +02:00
Sandro La Bruzzo 032bcc8279 since last beta workflow we decide to introduce in the graph only MAG item with DOI and set them invisible ( this should be the same behaviour of the previous DOIBoost mapping). 
This commit apply this type of mapping
 2024-05-20 09:24:15 +02:00
Sandro La Bruzzo 103e2652b3 merged beta 2024-05-17 14:43:07 +02:00
Sandro La Bruzzo a87f9ea643 fixed scholexplorer bug 2024-05-17 14:16:43 +02:00
Sandro La Bruzzo 6efab4d88e fixed scholexplorer bug 2024-05-16 16:19:18 +02:00
Claudio Atzori 92f018d196 [graph provision] fixed path pointing to an intermediate data store in the working directory 2024-05-15 15:39:18 +02:00
Claudio Atzori 0611c81a2f [graph provision] using Qualifier.classNames to populate the correponsing fields in the JSON payload 2024-05-15 15:33:10 +02:00
Michele Artini 2b3b5fe9a1 oai finalization and test 2024-05-15 14:13:16 +02:00
Claudio Atzori 1efe7f7e39 [graph provision] upgrade to dhp-schema:6.1.2, included project.oamandatepublications in the JSON payload mapping, fixed serialisation of the usageCounts measures 2024-05-14 12:39:31 +02:00
Claudio Atzori 53e7bb4336 Merge pull request 'rest-collector-plugin-with-retry' (#432) from rest-collector-plugin-with-retry into beta 
Reviewed-on: #432
 2024-05-10 09:02:33 +02:00
Claudio Atzori f7d56e2ef2 Merge branch 'beta' into rest-collector-plugin-with-retry 2024-05-10 09:02:21 +02:00
Claudio Atzori c1237ab39e Merge pull request 'Fixes in Graph Provision' (#434) from beta_provision_relation into beta 
Reviewed-on: #434
 2024-05-09 14:15:05 +02:00
Claudio Atzori dc3a5858f7 Merge branch 'beta' into beta_provision_relation 2024-05-09 14:14:43 +02:00